KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:28 2014 Check: 00 .. Name: ENSP00000257312/1-867 Len: 953 Check: 1058 Weight: 1.00 Name: ENSBTAP00000004643/1-851 Len: 953 Check: 6736 Weight: 1.00 Name: BACU017466/1-890 Len: 953 Check: 8936 Weight: 1.00 Name: ENSTTRP00000014655/1-859 Len: 953 Check: 2950 Weight: 1.00 Name: bmy_20727T0/1-594 Len: 953 Check: 2032 Weight: 1.00 // 1 50 ENSP00000257312/1-867 MQAEAADWFS SMPFQKHVYY PLAS-GPEGP DVAVAAAAAG AASMACAPPS ENSBTAP00000004643/1-851 MPAEAADLLP SMPFQKHVYY PLASAGGLEE PDASAAAAAG GAAMACGPPS BACU017466/1-890 ---------- ---------- ---------- ---------- ---MACGPPS ENSTTRP00000014655/1-859 KPAEAADLLP SMPFQKHVYY PLAN-----S ERPASERAAG GAAMAC--PA bmy_20727T0/1-594 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000257312/1-867 AASGPLPFFQ FRPRLESVDW RRLSAIDVDK VAGAVDVLTL QENIMNITFC ENSBTAP00000004643/1-851 AASGPLPFFQ FRPRLESVDW RRLSAIDVDK VAGAVDVLTL QENIMNITFC BACU017466/1-890 AASGPLPFFQ FRPRLESVDW RRLSAIDVDK VAGAVDVLTL QENIMNITFC ENSTTRP00000014655/1-859 SAAGPLPFFQ FRPRXXXXXW RRLSAIDVDK VAGAVDVLTL QENIMNITFC bmy_20727T0/1-594 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000257312/1-867 KLEDEKCPHC QSGVDPVLLK LIRLAQFTIE YLLHSQEFLT SQLHTLEERL ENSBTAP00000004643/1-851 KLEDEKCPHC QSGVDPVLLK LIRLAQLTIE YLLHSQEFLT SQLHGLEERL BACU017466/1-890 KLEDEKCPHC QSGVDPVLLK LIRLAQLTIE YLLHSQEFLT SQLHDLEERL ENSTTRP00000014655/1-859 KLEDEKCPHC QSGVDPVLLK LIRLAQLTIE YLLHSQEFLT SQLHNLEERL bmy_20727T0/1-594 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000257312/1-867 RLSHCDGEQS KKLLTKQAGE IKTLKEECKR RKKMISTQQL MIEAKANYYQ ENSBTAP00000004643/1-851 RRSLAEGEHS KKLLTKQAGE IKLLKEECKR RKKLISTQQL MIEAKASYYQ BACU017466/1-890 RLSLAESEQS KKLLTKQAGE IKLLKEECKR RKKLISTQQL MIEAKASYYQ ENSTTRP00000014655/1-859 RLSLAECEQS KKLLTKQAGE IKLLKEECKR RKKLISTQQL MIEAKASYYQ bmy_20727T0/1-594 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000257312/1-867 CHFCDKAFMN QAFLQSHIQR RHTEENSHFE YQKNAQIEKL RSEIVVLKEE ENSBTAP00000004643/1-851 CHFCDKAFMN QAFLQSHIQR RHPEDSHL-E YKTRAQTDKL QSEIDMLKEQ BACU017466/1-890 CRFCDKAFMN QAFLQSHIQR RHPEDSHLAE YKTRAQTDKL QNEIDMLKGQ ENSTTRP00000014655/1-859 CRFCDKAFMN QAFLQSHIQR RHPEDSHL-E YKTRAQTDKL QNEIDMLKEQ bmy_20727T0/1-594 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000257312/1-867 LQLTRSELEA AHHASAVRFS KEYEMQKTKE EDFLKLFDRW KEEEKEKLVD ENSBTAP00000004643/1-851 LQLTKSQLEA AQHAHAIRLS KEYEMQKTKE EEFLKLFDRW KEEEKEKLVD BACU017466/1-890 LQLTKSQLEA AQHAHAVRFS KEYEMQKTKE EEFLKLFDRW KEEEKEKLVG ENSTTRP00000014655/1-859 LQLTRSQLEA AQHAHVVRFS KEYEMQKTKE EEFLKLFDRW KEEEKEKLAD bmy_20727T0/1-594 ---------- ---------- ----MQKTKE EEFLKLFDRW KEEEKEKLVD 301 350 ENSP00000257312/1-867 EMEKVKEMFM KEFKELTSKN SALEYQLSEI QKSNMQIKSN IGTLKDAHEF ENSBTAP00000004643/1-851 EMEKVKEMFM KEFKELTSKN SALEYQLSEI QKSNMQIKSN IGTLKDAHEF BACU017466/1-890 EMEKVKEMFM KEFKELTSKN SALEYQLSEI QKSNMQIKSN IGTLKDAHEF ENSTTRP00000014655/1-859 EMEKVKEMFM KEFKELTSKN SALEYQLSEI QKSNMQIKCN IGTLKDAHEL bmy_20727T0/1-594 EMEKVKEMFM KEFKELTSKN SALEYQLSEI QKSNMQIKSN IGTLKDAHEF 351 400 ENSP00000257312/1-867 KEDRSPYPQD FHNVMQLLDS QESKWTARVQ AIHQEHKKEK GRLLSHIEKL ENSBTAP00000004643/1-851 KEERPQHPQD FQNVMQLLDN QESKWTARVQ ALHQEHKKEK SRLLSHIEKL BACU017466/1-890 KEERPQHPQD FQNVMQLLDS QESKWTARVQ ALHQEHKKEK SRLLSHIEKL ENSTTRP00000014655/1-859 KEERPQHPQD FQNVMQLLDS QESKWTARVQ ALHQEHKKEK SRLLSHIEKL bmy_20727T0/1-594 KEERPQHPQD FQNVMQLLDS QESKWTARVQ ALHQEHKKEK SRLLSHIEKL 401 450 ENSP00000257312/1-867 RTSMIDDLNA SNVFYKKRIE ELGQRLQEQN ELIITQRQQI KDFTCNPLNS ENSBTAP00000004643/1-851 RTSMIDDLNA SNVFYKKRIE ELGQRLQEQN ELIITQRQQI KEFTSKPLNS BACU017466/1-890 RTSMIDDLNA SNVFYKKRIE ELGQRLQEQN ELIITQRQQI KEFTSKPLNS ENSTTRP00000014655/1-859 RTSMIDDLNA SNVFYKKRIE ELGQRLQEQK ELIITQRQQI KEFTSKPLNS bmy_20727T0/1-594 RTSMIDDLNA SNVFYKKRIE ELGQRLQEQN ELIVTQRQQI KEFTSKPLNS 451 500 ENSP00000257312/1-867 ISEPKGNPLA WQAFESQPAA PAVPMNAPAL HTLETKSSLP MVH------- ENSBTAP00000004643/1-851 VSEPK----- ---------- ----VNAPAT QTLDAKSSLP MAH------- BACU017466/1-890 VSEPRGNPLT WQTFESKPTT PTVPMNAPAP QTLDAKSSLT MAHAAERSEA ENSTTRP00000014655/1-859 VSEPRGNPLT WQTFESKPTT PTVPMNAPAP QTLDAKSSLT MAH------- bmy_20727T0/1-594 VSEPRGNPLT WQTFESKPTT ATVPMNAPAP QTLDAKSSLT MAH------- 501 550 ENSP00000257312/1-867 ---------- ---------- --------EQ AFSSHILEPI EELSEEEKGR ENSBTAP00000004643/1-851 ---------- ---------- --------EQ AFSSHILEPI EELSEEEKGR BACU017466/1-890 EHGRIGELGC GKLSLTDAFK EPELGDQLEQ AFSSHILEPI EELSEEEKGK ENSTTRP00000014655/1-859 ---------- ---------- --------EQ AFSSHILEPI EELSEEEKGK bmy_20727T0/1-594 ---------- ---------- --------EQ AFSSHILEPI EELSEEEKGK 551 600 ENSP00000257312/1-867 ENEQKLNNNK MHLRKALKSN SSLTKGLRTM VEQNLMEKLE TLGINADIRG ENSBTAP00000004643/1-851 ENEQKLYDNK IHIRKTLKNN PSLTKEIRTV LEQSLVEKLE TLGINADIRG BACU017466/1-890 ENEQKLNNNK IHLRKTLKNN PSLTREIRTV LEQSLVEKLE TLGINADIRG ENSTTRP00000014655/1-859 ENEQKL-NNK IHLRKTLKNN PSLTKEIRTV LEQSLVEKLE TLGISADIRG bmy_20727T0/1-594 ENEQKLNNNK IHLRKTLKNN XSLTKEIRTV LEQSLVEKLE TLGINADIRG 601 650 ENSP00000257312/1-867 ISSDQLHRVL KSVESERHKQ EREIPNFHQI REFLEHQVSC KIEEKALLSS ENSBTAP00000004643/1-851 IPSDHLNRVL RTVESTRHER ERQIPNIQQI REFLEHQVSC KIEERTLLST BACU017466/1-890 IPSDHLNRVL RTMESARHER ERQIPNIQQI REFLERQVRC KTEERTLLST ENSTTRP00000014655/1-859 IPSDHLNRVL RTVESARHER ERQIPNIQQI REFLENQVSR KTEERTLLST bmy_20727T0/1-594 IPSDHLNRVL RTIESARHER ERQIPNIQQI REFLERQVSC KTEERTLLST 651 700 ENSP00000257312/1-867 DQCSVSQMDT LSTGEVPKMI QLPSKNRQLI RQKAVSTDRT SVPKIKKNVM ENSBTAP00000004643/1-851 DRYGASQMDT LSAGELPKAI HLPPKSRQLI RQRPVFSDRT SIPKEGKNIA BACU017466/1-890 DRYSTSQVDT LSTGEIPKAI HLPPKSRQLV RQRPVFTDRT SVPK------ ENSTTRP00000014655/1-859 DRYSASQVDT LSTGEIAKAI HLPLKSRQLV RQKPVFTDRT SVPKVKKNIT bmy_20727T0/1-594 DRYSTSQVDT LSTGEIPKAV HLPPKSRQLV RQRPVFTDRT SVPKVKKNIT 701 750 ENSP00000257312/1-867 EDPFPRKSST ITTPPFSSEE EQEDDDLIRA YASPGPLPV- PPPQNKGSFG ENSBTAP00000004643/1-851 KDHFPRRSST IVTPPFSSEE ELDADDLVQA FTSPDVLPVL SSKSNKSSFG BACU017466/1-890 ---------- --TPPFSSEE ELDDEDLLQA CASPDLLPVL SSKSNKSSFG ENSTTRP00000014655/1-859 EDHFPRKSST VATPPFSSEE ELDDGDLLQA CVSPDLLPVL SSKSNKSSFG bmy_20727T0/1-594 EDHFPRKSST IATPPFSSEE ELDDEDLLQA CASPDLLPVL SSKSNKSSFG 751 800 ENSP00000257312/1-867 KNT-VKSDAD GTEGSEIEDT DDSPKPAGVA VKTPTEKVEK MFPHRKNVNK ENSBTAP00000004643/1-851 KSTVVKSDTD WTEGSEIEDS DISPKPTGTS IKTLTGKVEK TVSNHRNMNK BACU017466/1-890 RNT-VKSDTD WTEGSEIEDS AISPKPTGTS IKTLTGKVEK TVSNHRSMNK ENSTTRP00000014655/1-859 RNT-VKSDTD WTEGSEIEDS AISPKPTGTS IKTLTGKVEK TVSNHRNVNK bmy_20727T0/1-594 RNT-XKSDTD WTEGSEIEDS AISPKPTGTS IKTLTGKVEK TVSNHRSVNK 801 850 ENSP00000257312/1-867 PVGGTNVPEM FIKKEELQEL KCADVEDEDW DISSLEEEIS LGKKSGKEQK ENSBTAP00000004643/1-851 PVGGINVADA FIKKELKEDL KCTDVDDDDW DISSLEEDRS IGRKAGREQK BACU017466/1-890 PVGGLNVAEA FIKKAQKEDL KCADVDDNDW DISSLEEEKS LGRRIGREQK ENSTTRP00000014655/1-859 PVGGLNVAEA FIKKAQKEDL KCADVDDNDW DISSLEEEKS LGKRIGREQK bmy_20727T0/1-594 PVGGLNVAEA FIKKAQKEDL KCADVDDNDW DISSLEEEKS LGRRIGREQK 851 900 ENSP00000257312/1-867 E-PPPAKNEP HFAHVLNAWG AFNPKGPKGE ---------- ---------- ENSBTAP00000004643/1-851 EPPPPVKNES NSTQVPNAWV AANPKGPKGE ---------- ---------- BACU017466/1-890 E-PPPVKNES NSTQVPSAWG ATNLKGPKGE VPRTRPERHT GTWSVISERG ENSTTRP00000014655/1-859 E-PPPVKNES NATQVPSAWG ATNQKGPKGE ---------- ---------- bmy_20727T0/1-594 E-PPPVKNES NSTQVPSAWG ATNLKGPKGE ---------- ---------- 901 950 ENSP00000257312/1-867 ------GL-- --QENESSTL KSSLVTVTDW SDTSDV---- ---------- ENSBTAP00000004643/1-851 ------GL-- --QEDESSTL KSSLVTVTEW SDSSDV---- ---------- BACU017466/1-890 RYNAAPGLPL LAPKSAMTSI SSSALADAPP QDLPSVLEKP EQLFKADVPG ENSTTRP00000014655/1-859 ------G--- --PQDESSTL KSSLVTVTDW SDSSDV---- ---------- bmy_20727T0/1-594 ------G--- --PQDESSTL KSSLVTVTDW SDSSDV---- ---------- 951 1000 ENSP00000257312/1-867 --- ENSBTAP00000004643/1-851 --- BACU017466/1-890 DGQ ENSTTRP00000014655/1-859 --- bmy_20727T0/1-594 ---