KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:24:29 2014 Check: 00 .. Name: ENSP00000227065/1-482 Len: 867 Check: 5931 Weight: 1.00 Name: ENSBTAP00000004650/1-820 Len: 867 Check: 5875 Weight: 1.00 Name: bmy_00297T0/1-577 Len: 867 Check: 3434 Weight: 1.00 Name: ENSTTRP00000014808/1-637 Len: 867 Check: 6030 Weight: 1.00 // 1 50 ENSP00000227065/1-482 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004650/1-820 MKVAVLDLGS LFAKIFKTST APPAASSPVS SSSPSRGAAA AGAAGSRPGT bmy_00297T0/1-577 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014808/1-637 ---------- ---------- --------GG AGLGGRGARA PGARGRR--- 51 100 ENSP00000227065/1-482 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004650/1-820 SLSAARTLTV LPALAPDSPS SSRGPSVLLQ PTPAALHPLL AAPHVRVSVA bmy_00297T0/1-577 ---------- ---------- ---------- ---------- -------MV- ENSTTRP00000014808/1-637 ---------- -----LQGAG SGWQRRAALR PRGSGPGPQD ASPDLGLMV- 101 150 ENSP00000227065/1-482 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004650/1-820 GRPAEAVETP ASLPSSPGAA KVRSSPLPLA LPPAPSSGGR SSAGSPAHLV bmy_00297T0/1-577 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014808/1-637 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000227065/1-482 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004650/1-820 VVARQPPGPG AVWAAYPSIG GSVGSSISSS VTASPRNPRP PCPGEKEPSA bmy_00297T0/1-577 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014808/1-637 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000227065/1-482 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004650/1-820 RVPPGPGPKT LFFTLPDIGE EWASDSDSED GRLGRGLSEG SGKQSFTVKS bmy_00297T0/1-577 ---------- ---------- ---------- --IGRGLPEA SGKQSFAVKS ENSTTRP00000014808/1-637 ---------- ---------- ---------- --IGRGLPEG SGKQSFAVKS 251 300 ENSP00000227065/1-482 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004650/1-820 KDPLPTHFTK NVQKAIAKYS RESVSSFSSS GSPTPTEAPN SWSGSGTQSS bmy_00297T0/1-577 KDPLPTHFTR NVQKAIDKYT RESVSSFSSS GSPMPTEAPN CWSGSGTQSS ENSTTRP00000014808/1-637 KDPLPTHFTR NVQRAIDKYT RESVSSFSSN GNPMPTEAPN SWSGSGTQSS 301 350 ENSP00000227065/1-482 ---------- ---------- ---------- ------MLFE GKVNPQTQSL ENSBTAP00000004650/1-820 TTGLSTERSS IYSWRDDEFD KASAQKVQQL FWEVEEMLFE GKVSPQTQNL bmy_00297T0/1-577 TTGLSTERSS IYSWRDDEFD KANAQKVQQL FWEVEEMLFE GKVSPQTQNL ENSTTRP00000014808/1-637 TTGLSTERSS IYSWRDDEFD KANAQKVQQL FWEVEEMLFE GKVSPHTQNL 351 400 ENSP00000227065/1-482 LAECGEWTRR SLHLRVLGRQ LILPTDKGVQ HFQGSTPASA VHRPPLSACG ENSBTAP00000004650/1-820 QAECREWAGR SLHLRVLGRQ LIPPADEGVE HFQSSRPASA IQRPFLDDCG bmy_00297T0/1-577 RAECSEWARR SLHLRVLGRQ LILPTDEGVR HFQGSKPASA IHRPFFDDCE ENSTTRP00000014808/1-637 QAECSEWARR SLHLRVLGRQ LVLPTDEGVQ HFQGSKPASA VHRPFSDDCE 401 450 ENSP00000227065/1-482 HSSNIRELCI SGSQIVPAAL SASALPGPDD TGVADLTARS SLEEEVYHVD ENSBTAP00000004650/1-820 HSSNIRELCI SGSQIVPAVL PAPSLPGPDG TRVVDLMAHS SLEEEIFDVD bmy_00297T0/1-577 PSSNIRELCI SGSQIVPAAL SALTVPGAVG TGVADLTACS SLEEEVYDVD ENSTTRP00000014808/1-637 PSSNIRELCI SGSQIVPAAL SALTLPGPVG TGIADLTACS SLEEEVYDVD 451 500 ENSP00000227065/1-482 GKIEEYFAFD RKEDDDECLE QKPAQPGRKW RKLGLPPVSP RDCVKDAVAA ENSBTAP00000004650/1-820 GKIEEYFAFD RKQDGEDCLE QKPAHRRRTW RKHGLPPVSP HDCIRDAVAA bmy_00297T0/1-577 GKIEEYFAFD RREDDEDCLE QNPAHHHRTW HKHGLPPVSP HDCVRDAVAA ENSTTRP00000014808/1-637 GKIEEYFAFD RKEDDEDCLE QNPAQHHRTW HKHGLPPVSP HDCVRDAVAA 501 550 ENSP00000227065/1-482 EVFDHVWTNM VELLEELIRK HWETTLTEGK KQRETLKVAG NRFPHVLVPH ENSBTAP00000004650/1-820 EVFDHVWMNV VEVLEKLTRK HWELTGTEGK KQKEKLKVAE NKSPPTVISR bmy_00297T0/1-577 EVFDHVWTAV VEILEKLIRK NWEITLTEGK KQKEKLKVAE NKSPPLVISC ENSTTRP00000014808/1-637 EVFDHIWTAV VEILEKLTRK NWXXXXXXGK KQKEKSKVAE NKSPPMVVSC 551 600 ENSP00000227065/1-482 AHADGASGPP SGHAEAHGIS LASRLNP--- PQIHHFSSSF YSDMNGVMTI ENSBTAP00000004650/1-820 INADVSSVPP SRSSETRSVS LASHLNPQQF PQIHRFSNNF YSDLNGVMTI bmy_00297T0/1-577 INADVSSVPP SRSSETRSVI LASHLNP--- PQ-------- ---------- ENSTTRP00000014808/1-637 INADVSSVPP SRSSETRSVS LASHLNP--- PQIHRFSNNF YSDLNGVMTI 601 650 ENSP00000227065/1-482 QAKPLQRRPA YFADRTQNEK EDKASGGGAG ALSSAPHRLG RASDTHGLSP ENSBTAP00000004650/1-820 QAKPLQQRPT CFADRTQSEQ EDKPLGVGSA VLSSAQNRLA RITDARGPQT bmy_00297T0/1-577 ---------- ---------- ---------- ------HRLA RILDARGLQT ENSTTRP00000014808/1-637 QAKPLQQRPT YFADRTQSEQ EDRSLGSGAG ALASAQHRLA RILEARGLQT 651 700 ENSP00000227065/1-482 SAKKTPVPWR LPSLASDSQR LKTPNIYSDE VLRGTKLPTG VDHMASPLVQ ENSBTAP00000004650/1-820 SAKKTLAHRR LPSLTSDSQR LKIPSVYSDE VLRGTKLQTG VDRMGSPPTQ bmy_00297T0/1-577 SAKKTLAYRR LPSLTSESQR IKIPSVYGDE VLRGTKLQTD VDRTASPPVQ ENSTTRP00000014808/1-637 SAKKTPAYRR LPSLTSESQR IKIPSVYSDE VLRGTKLQTG VDRTASPPVQ 701 750 ENSP00000227065/1-482 TSRSRFPPLV TETRGQNTAV PGCRLVS--- -YRGRHLQNR VL-------- ENSBTAP00000004650/1-820 TPRSRLPPIG SETGEHHVAG PGSRPVS--- -LRGRHLQNH GL-------- bmy_00297T0/1-577 TSRSRLPPIG SETGEQNMAV PGSRPVSDCI YFKQEHITLH LVQRKASTKP ENSTTRP00000014808/1-637 TSRSRLPPIG SETGEQNMAV PGWRPVS--- -LRGRHPQKH VL-------- 751 800 ENSP00000227065/1-482 ----SAMPDG TERSRLRERT ATLERLSRPS TTHTFRQSDT PRKSSLTQME ENSBTAP00000004650/1-820 ----SALPDS VERSPLRERS LTMEQFSRPS TTHTF-RSDT PRKGSLTLME bmy_00297T0/1-577 CVECSTCPCR T-ITPSRKIS GHGTVF-KPS TTHTF-RSDM PRKGSLTLRE ENSTTRP00000014808/1-637 ----STVPVR VERSPLQERS LAMEQF-SPS TSHTFWQSDT PRKGSLTLRE 801 850 ENSP00000227065/1-482 FAAHTWTGQS ILTG--SQYV PK--SFQRTT LTFKRR---- ----FQVTS- ENSBTAP00000004650/1-820 FAGHMWTGQG FLTG--SQYP PK--SFQRTT LTLRKR---- ----FQVAS- bmy_00297T0/1-577 SAGHTWTGQG FLTGRCSPYT NKMISFSDII LVVRREDYCQ LIDVWKLKST ENSTTRP00000014808/1-637 FAGHTWTGQG FLTG--SQFP PK--SFQR-T LTFRKR---- ----FQVAC- 851 900 ENSP00000227065/1-482 ---------- ------- ENSBTAP00000004650/1-820 ---------- ------- bmy_00297T0/1-577 LGLEFVLSFI TEWTKQK ENSTTRP00000014808/1-637 ---------- -------