KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:30 2014 Check: 00 .. Name: bmy_22503T0/1-632 Len: 720 Check: 1292 Weight: 1.00 Name: ENSP00000398131/1-637 Len: 720 Check: 1004 Weight: 1.00 Name: ENSTTRP00000011035/1-707 Len: 720 Check: 2175 Weight: 1.00 Name: ENSBTAP00000004656/1-605 Len: 720 Check: 9203 Weight: 1.00 Name: BACU012953/1-249 Len: 720 Check: 7171 Weight: 1.00 // 1 50 bmy_22503T0/1-632 ---------- ---------- ---------- ---------- ---------- ENSP00000398131/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011035/1-707 SHTRGGLSRC CRCRRECGVG TGAAAATTPG CAASPRAFCL AFPGSARPAP ENSBTAP00000004656/1-605 ---------- ---------- ---------- ---------- ---------- BACU012953/1-249 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_22503T0/1-632 ---------- ---------- --MDPGS--- ---------- --SSSSDSAP ENSP00000398131/1-637 ---------- ---------- --MDPGSGGG GGGGGGGGSS SGSSSSDSAP ENSTTRP00000011035/1-707 PRPIAPASIS RPRFTTHTAP PIMDPGSGGG GGGGGGGGS- --SSSSDSAP ENSBTAP00000004656/1-605 ---------- ---------- ---------- ---------- ---------- BACU012953/1-249 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_22503T0/1-632 DCWDQVDMEA PGLAPSGDRA ASAAAAAAAE AQREPLSSAF SRQLNVNAKP ENSP00000398131/1-637 DCWDQADMEA PGPGPCGG-G GS--LAAAAE AQRENLSAAF SRQLNVNAKP ENSTTRP00000011035/1-707 DCWDQADMEA PGPGSCGG-A GG-LLAAAAE AQREHLSAAF SRQLNVNAKP ENSBTAP00000004656/1-605 -------MEA PGPGPCGG-A GGPLAAAAAE AQREHLSAAF SRQLNVNAKP BACU012953/1-249 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_22503T0/1-632 FVPNVHAAEF VPSFLRGPCQ PQTPPADAPG IDETCPGAGD PQGKRLGRGA ENSP00000398131/1-637 FVPNVHAAEF VPSFLRGPA- APPPP---VG GAANNHGAGS GAG---GRAA ENSTTRP00000011035/1-707 FVP-VHAAEF VPSFL-GPAQ SPAPP---PG VAAXXXXXXX XXX---XXXX ENSBTAP00000004656/1-605 FVPNVHAAEF VPSFLRGPAQ LPASP---AG AAANNHGAGN GAG---GPSA BACU012953/1-249 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_22503T0/1-632 PVEHSKEEQL VWHEGSNSAV TMELSEPVVE NGEVEMVLEE SWEHNKEVSE ENSP00000398131/1-637 PVESSQEEQS -LCEGSNSAV SMELSEPIVE NGETEMSPEE SWEHKEEISE ENSTTRP00000011035/1-707 PVEPSQEEQS LLCEGSNSAV SMELSEPVVE NGETEMSPEE SWEHKEEISE ENSBTAP00000004656/1-605 PVESSQEEQS LLCEGSNSAV SMELSEPI-E NGETEMSPEE SWEHKEEISE BACU012953/1-249 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_22503T0/1-632 AEPGGSSLGD SGPPEESGQE MI-EKEEIRK SKSVVVPSGA PKKEHVNVVF ENSP00000398131/1-637 AEPGGGSLGD GRPPEESAHE MMEEEEEIPK PKSVVAPPGA PKKEHVNVVF ENSTTRP00000011035/1-707 AEPGGGSLGD GRPTEESAQE MMEEEEEIPK PKSVVAPPGA PKKEHVNVVF ENSBTAP00000004656/1-605 AEPDGGSLGD GRPAEESAQE MMEEEEEIPK PKSVVAPPGA PKKEHVNVVF BACU012953/1-249 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_22503T0/1-632 IGHVDAGKST IGGQIMFLTG MVDKRTLEKY EREAKEKNRE TWYLSWALDT ENSP00000398131/1-637 IGHVDAGKST IGGQIMYLTG MVDKRTLEKY EREAKEKNRE TWYLSWALDT ENSTTRP00000011035/1-707 IGHVDAGKST IGGQIMYLTG MVDKRTLEKY EREAKEKNRE TWYLSWALDT ENSBTAP00000004656/1-605 IGHVDAGKST IGGQIMYLTG MVDKRTLEKY EREAKEKNRE TWYLSWALDT BACU012953/1-249 ---------- ---------- ---------- ---------- -RYLSWALDT 351 400 bmy_22503T0/1-632 NQEERDKGKT VEVGRAYFET EKKHFTILDA PGHKSFVPNM IGGASQADLA ENSP00000398131/1-637 NQEERDKGKT VEVGRAYFET EKKHFTILDA PGHKSFVPNM IGGASQADLA ENSTTRP00000011035/1-707 NQEERDKGKT VEVGRAYFET EKKHFTILDA PGHKSFVPNM IGGASQADLA ENSBTAP00000004656/1-605 NQEERDKGKT VEVGRAYFET EKKHFTILDA PGHKSFVPNM IGGASQADLA BACU012953/1-249 NQEERDKGKT VEVGRAYFET EKKHFTILDA PGHKSFVPNM IGGASQADLA 401 450 bmy_22503T0/1-632 VLVISARKGE FETGFEKGGQ TREHAMLAKT AGVKYLIVLI NKMDDPTVNW ENSP00000398131/1-637 VLVISARKGE FETGFEKGGQ TREHAMLAKT AGVKHLIVLI NKMDDPTVNW ENSTTRP00000011035/1-707 VLVISARKGE FETGFEKGGQ TREHAMLAKT AGVKHLIVLI NKMDDPTVNW ENSBTAP00000004656/1-605 VLVISARKGE FETGFEKGGQ TREHAMLAKT AGVKHLIVLI NKMDDPTVNW BACU012953/1-249 VL-------- ---------- ---------- ---------- ---------- 451 500 bmy_22503T0/1-632 SSERYEECKE KLVPFLKKVG FSPKKDIHFM PCSGLTGANI KEQSDFCPWY ENSP00000398131/1-637 SNERYEECKE KLVPFLKKVG FNPKKDIHFM PCSGLTGANL KEQSDFCPWY ENSTTRP00000011035/1-707 SNERYEECKE KLVPFLKKVG FNPKKDIHFM PCSGLTGANL KEQSDFCPWY ENSBTAP00000004656/1-605 SNERYEECKE KLVPFLKKVG FNPKKDIHFM PCSGLTGANL KEQSDFCPWY BACU012953/1-249 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_22503T0/1-632 TGLPFIPYLD NMPNFNRSID GPIRLPIVDK YKDMGTVVLG KLESGSIFKG ENSP00000398131/1-637 IGLPFIPYLD NLPNFNRSVD GPIRLPIVDK YKDMGTVVLG KLESGSICKG ENSTTRP00000011035/1-707 IGLPFIPYLD NLPNFSRSVD GPIRLPIVDK YKDMGTVVLG KLESGSICKG ENSBTAP00000004656/1-605 IGLPFIPYLD NLPNFNRSVD GPIRLPIVDK YKDMGTVVLG KLESGSICKG BACU012953/1-249 ---------- ---------- ---------- --DMGTVVLG KLESGSICKG 551 600 bmy_22503T0/1-632 QQLVMMPNKH NVEVLGILSD DAETDYVAPG ENLKIRLKGI EEEEILPGFI ENSP00000398131/1-637 QQLVMMPNKH NVEVLGILSD DVETDTVAPG ENLKIRLKGI EEEEILPGFI ENSTTRP00000011035/1-707 QQLVMMPNKH NVEVLGILSD DVETDSVAPG ENLKIRLKGI EEEEILPGFI ENSBTAP00000004656/1-605 QQLVMMPNKH NVEVLGILSD DVETDSVAPG ENLKIRLKGI EEEEILPGFI BACU012953/1-249 QQLVMMPNKH NVEVLGILSD DVETDSVAPG ENLKIRLKGI EEEEILPGFI 601 650 bmy_22503T0/1-632 LCDPNNLCHS GRTFDVQIVI IEHKSIICPG YNAVLHIHTC IEEVEITALI ENSP00000398131/1-637 LCDPNNLCHS GRTFDAQIVI IEHKSIICPG YNAVLHIHTC IEEVEITALI ENSTTRP00000011035/1-707 LCDPNNLCHS GRTFDAQIVI IEHKSIICPG YNAVLHIHTC IEEVEITALI ENSBTAP00000004656/1-605 LCDPNNLCHS GRTFDAQIVI IEHKSIICPG YNAVLHIHTC IEEVEITALI BACU012953/1-249 LCDPNNLCHS GRTFDAQIVI IEHKSIICPG YNAVLHIHTC IEEVEITALI 651 700 bmy_22503T0/1-632 SLVDKKSGEK SKTRPRFVKQ DQVCIARLRT AGTICLETFK DFPQMGRFTL ENSP00000398131/1-637 CLVDKKSGEK SKTRPRFVKQ DQVCIARLRT AGTICLETFK DFPQMGRFTL ENSTTRP00000011035/1-707 CLVDKKSGEK SKTRPRFVKQ DQVCIARLRT AGTICLETFK DFPQMGRFTL ENSBTAP00000004656/1-605 CLVDKKSGEK SKTRPRFVKQ DQVCIARLRT AGTICLETFK DFPQMGRFTL BACU012953/1-249 CLVDKKSGEK SKTRPRFVKQ DQVCIARLRT AGTICLETFK DFPQMGRFTL 701 750 bmy_22503T0/1-632 RDEGKTIAIG KVLKLVPEKD ENSP00000398131/1-637 RDEGKTIAIG KVLKLVPEKD ENSTTRP00000011035/1-707 RDEGKTIAIG KVLKLVPEKD ENSBTAP00000004656/1-605 RDEGKTIAIG KVLKLVPEKD BACU012953/1-249 RDEGKTIAIG KVLKLVPEKD