KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:31 2014 Check: 00 .. Name: ENSP00000262809/1-621 Len: 621 Check: 8428 Weight: 1.00 Name: ENSTTRP00000009913/1-608 Len: 621 Check: 4288 Weight: 1.00 Name: ENSBTAP00000004667/1-616 Len: 621 Check: 8085 Weight: 1.00 Name: bmy_02633T0/1-569 Len: 621 Check: 5018 Weight: 1.00 Name: BACU016654/1-612 Len: 621 Check: 4683 Weight: 1.00 // 1 50 ENSP00000262809/1-621 MAALKEDRSY GLSCGRVSDG SKVSVFHVKL TDSALRAFES YRARQDSVSL ENSTTRP00000009913/1-608 MAALKEAHIY GLSSGGVSDG NKVSVFHVEL TDSAERAFER YRSSQDSVSL ENSBTAP00000004667/1-616 MAALKEDRSY GLSCGRVSDG SKVSVFHVKL TDSALRAFES YRASQDSVSL bmy_02633T0/1-569 ---------- ---------- ---------- ---------- ---MEDSVSL BACU016654/1-612 MAALKEARSY GLSCGRVSDG SKVSVFHVKL TDSALRAFES YRASQDSVSL 51 100 ENSP00000262809/1-621 RPSIRFQGSQ GHISIPQPDC PAEARTFSFY LSNIGRDNPQ GSFDCIQQYV ENSTTRP00000009913/1-608 RPSIRFQGSQ GHISIPQPDC PTEPRTFSFY LSNIGRDSPQ GSFDCIQQYV ENSBTAP00000004667/1-616 RPSIRFQGSQ GHISIPQPDC PTEARTFSFY LSNIGRDSPQ GSFDCIQQYV bmy_02633T0/1-569 RPSIRFQGSQ GHISIPQPDC PTEPRTFSFY LSNIGRDSPQ GSFDCIQQYV BACU016654/1-612 RPSIRFQGSQ GHISIPQPDC PTEPRTFSFY LSNIGRDSPQ GSFDCIQQYV 101 150 ENSP00000262809/1-621 SSHGEVHLDC LGSIQDKITV CATDDSYQKA RQSMAQAEEE TRSRSAIVIK ENSTTRP00000009913/1-608 SSHGDVHLDC LGS-QDKITV CATDDSYQKA RQSLAQAEEE TRSRGAIVIK ENSBTAP00000004667/1-616 SSHGDVHLDC LGSIQDKITV CATDDSYQKA RQSLAQAEEE TRSRGAIVIK bmy_02633T0/1-569 SSHGDVHLDC LGSVQDKITV CATDDSYQKA RQSLAQAEEE TRSRGAIVIK BACU016654/1-612 SSHGDVHLDC LGSVQDKITV CATDDSYQKA RQSLAQAEEE TRSRGAIVIK 151 200 ENSP00000262809/1-621 AGGRYLGKKV QFRKPAPGAT DAVPSRKRAT PINLASAIRK SGASAVSGGS ENSTTRP00000009913/1-608 PGGRYLGKKV QFRKPAPGAV DAVPCRKRAT PINLASAIKK TSAGSV---S ENSBTAP00000004667/1-616 AGGRYLGKKV QFRKPAPGAV DAVPSRKRAT PINPASAIKK CSAGSAGGGS bmy_02633T0/1-569 PGGRYLGKKV QFRKPAPGAV DAVPSRKRAT PINLASAIKK TSAGSVSGGS BACU016654/1-612 PGGRYLGKKV QFRKPAPGAV DAVPSRKRAT PINLASAIKK TSAGSVSGGS 201 250 ENSP00000262809/1-621 GVSQRPFRDR VLHLLALRPY RKAELLLRLQ KDGLTQADKD ALDGLLQQVA ENSTTRP00000009913/1-608 GVSQRPFRDR VLHLLALRPY RKAELLLRLQ KDGLAQADKD ALDGLLQQVA ENSBTAP00000004667/1-616 GVSQRPFRDR VLHLLALRPY RKAELLLRLQ KDGLAQADKD ALDSLLQQVA bmy_02633T0/1-569 GVSQRPFRDR VLHLLALRPY RKAELLLRLQ KDGLAQADKD ALDGLLQQVA BACU016654/1-612 GVSQRPFRDR VLHLLALRPY RKAELLLRLQ KDGLAQADKD ALDGLLQQVA 251 300 ENSP00000262809/1-621 NMSAKDGTCT LQDCMYKDVQ KDWPGYSEGD QQLLKRVLVR KLCQPQSTGS ENSTTRP00000009913/1-608 NVNAKDGTCT LKDCVYKDVQ KDWPGYSEGD QKLLKRMLIR KLCQPQSSGG ENSBTAP00000004667/1-616 NVNAKDGTCT LKDCVYKDVQ KDWPGYSEGD QQLLKRMLVR KLCQPQSTGG bmy_02633T0/1-569 NVNAKDGTCT LKDCVYKDVQ KDWPGYSEGD QKLLKRMLIR KLCQPQSTGG BACU016654/1-612 NVNAKDGTCT LKDCVYKDVQ KDWPGYSEGD QKLLKRMLIR KLCQPQSTGG 301 350 ENSP00000262809/1-621 LLGDPAASSP PGERGRSASP PQKRLQPPDF IDPLANKKPR ISHFTQRAQP ENSTTRP00000009913/1-608 LPGDLAANSP AGEHGSSASP PQKRPQPPDF IDPLANKKPR ISHFAQRGQP ENSBTAP00000004667/1-616 LPGDLAASSP PGEHGSSASP PQKRPQPPDF IDPLANKKPR ISHFTQRAQP bmy_02633T0/1-569 LPGDLAANSP PGEHGSSASP PQKRPQPPDF IDPLANKKPR ISHFTQRAQP BACU016654/1-612 LPGDLAANSP PGEHGSSASP PQKRPQPPDF IDPLANKKPR ISHFTQRAQP 351 400 ENSP00000262809/1-621 AVNGKLGVPN GREALLPTPG PPASTDTLSS STHLPPRLEP PRAHDPLADV ENSTTRP00000009913/1-608 AVNGKLSVPH GREALLPTPG PLAGTD---- -AHLPLRLEP PRAHDPLADV ENSBTAP00000004667/1-616 TVNGKLSTTL GREGLLPTPG PLAGTD---- -THLPLRLEP PRAHDPLADV bmy_02633T0/1-569 AVNGKLSVPH GREALLPTPG PLAGTD---- -AHLPLRLEP PRAHDPLADV BACU016654/1-612 AVNGKLSVPH GREALLPTPG PLAGTD---- -AHLPLRLEP PRAHDPLADV 401 450 ENSP00000262809/1-621 SNDLGHSGRD CEHGEAAAPA PTVRLGLPLL TDCAQPSRPH GSPSRSKPKK ENSTTRP00000009913/1-608 SNDLGHSGRD CERGEVAAPA PTECLSLPLL TDCAQPSRPH GASLHGKSKK ENSBTAP00000004667/1-616 SNDLGHSGRD CERGEVAAPA PTERLSMPLL TDCAQPSRPH GGSLHGKSKK bmy_02633T0/1-569 SNDLGHSGRD CERGEVAAPA P-ECLSLPLL TDCAQPSRPH GSSLHGKSKK BACU016654/1-612 SNDLGHSGRD CERGEVAAPA P-ECLSLPLL TDCAQPSRPH GSSLHGKSKK 451 500 ENSP00000262809/1-621 KSKKHKDKER AAEDKPRAQL PDCAPATHAT PGAPADTPGL NGTCSVSSVP ENSTTRP00000009913/1-608 KSKKHKDKER AAEDRHRPRP PDDV-GPLG- --APPVAPXX XXXXXXXXXX ENSBTAP00000004667/1-616 KSKKHKDKER AAEDRPRDRP LSQTPGPPAP PVAPPVAPGL NGTCSSSSVP bmy_02633T0/1-569 KSKKHKDKER AAEDRHRPRP PDQMPGPLG- --APPVAPGL NGTCSSSSVP BACU016654/1-612 KSKKHKDKER AAEDRHRPRP PDQMPGPLG- --APPVAPGL NGTCSSSSVP 501 550 ENSP00000262809/1-621 TSTSETPDYL LKYAAISSSE QRQSYKNDFN AEYSEYRDLH ARIERITRRF ENSTTRP00000009913/1-608 XXXXXXXXXX XKYAAISSSE QCQSYKNDFS AEYSKYRDLH ARIEQITRHF ENSBTAP00000004667/1-616 TSTSETPDYL LKYATISSSE QRQSYKNDFN AEYSEYRGLH ARIERVTRRF bmy_02633T0/1-569 TSTSETPDYL LKYATISSSE QRQSYKNDFN AEYSEYRDLH ARIEQITRRF BACU016654/1-612 TSTSETPDYL LKYATISSSE QRQSYKNDFN AEYSEYRDLH ARIEQITRRF 551 600 ENSP00000262809/1-621 TQLDAQLRQL SQGSEEYETT RGQILQEYRK IKKTNTNYSQ EKHRCEYLHS ENSTTRP00000009913/1-608 TQLDAQLRQL SQGSEEYETT RGQILQEYRK IKKTNTNYSQ EKHRCEYLHS ENSBTAP00000004667/1-616 TQLDAQLRQL SQGSEEYETT RGQILQEYRK IKKTNTNYSQ EKHRCEYLHS bmy_02633T0/1-569 TQLDAQLRQL SQGSEEYETT RGQILQEYRK IKKTNTNYSQ EKHRCEYLHS BACU016654/1-612 TQLDAQLRQL SQGSEEYETT RGQILQEYRK IKKTNTNYSQ EKHRCEYLHS 601 650 ENSP00000262809/1-621 KLAHIKRLIA EYDQRQLQAW P ENSTTRP00000009913/1-608 KLAHIKRLIT EYDQRQLQAW P ENSBTAP00000004667/1-616 KLAHIKRLIA EYDQRQLQAW P bmy_02633T0/1-569 KLAHIKRLIA EYDQRQLQAW P BACU016654/1-612 KLAHIKRLIA EYDQRQLQAW P