KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:34 2014 Check: 00 .. Name: ENSP00000361868/1-638 Len: 737 Check: 8713 Weight: 1.00 Name: ENSBTAP00000004683/1-623 Len: 737 Check: 2504 Weight: 1.00 Name: ENSTTRP00000015797/1-598 Len: 737 Check: 3551 Weight: 1.00 Name: bmy_22354T0/1-582 Len: 737 Check: 6793 Weight: 1.00 Name: BACU012635/1-645 Len: 737 Check: 3007 Weight: 1.00 // 1 50 ENSP00000361868/1-638 MESCSVTRLE CSGAISAHCS LHLPGSSDSP ASASQIAGTT DAIWNEQEKA ENSBTAP00000004683/1-623 ---------- ---------M AAAGRGGSSF KVDTRPCLRE DITWNEQEKT ENSTTRP00000015797/1-598 ---------- ---------- ---------- ---------- -MTWKEQEKT bmy_22354T0/1-582 ---------- ---------- ---------- ---------- ---------- BACU012635/1-645 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000361868/1-638 ELFTDKFCQV CGVMLQFESQ RISHYEGEKH AQNVSFYFQM HGEQNEVPGK ENSBTAP00000004683/1-623 ELFADNFCHV CGVVLQFESQ RISHYESEKH AQNVRFYFQM HGEQNEVPGK ENSTTRP00000015797/1-598 ELFTDNFCNI CGVVLQFESQ RISHYESEKH DQNVRFYFQM HGEQNEVPGK bmy_22354T0/1-582 ---------- ---------- ---------- ---------- ---------- BACU012635/1-645 ---------- ---------- ---------- ---------M HGEQNEVPGK 101 150 ENSP00000361868/1-638 KMKMHVENFQ VHRYEGVDKN KFCDLCNMMF SSPLIAQSHY VGKVHAKKLK ENSBTAP00000004683/1-623 KMKMDVRNFQ EHRSEVVDRN KFCGLCHMVF SSSVVAQSHY VGKVHSKKLK ENSTTRP00000015797/1-598 KMKMDVRNFQ MHRSEVVDRN KFCDLCNMIF SSPVVAQSHY VGKFHAKKLK bmy_22354T0/1-582 ---------- ---------- ---------- ---------- ---------- BACU012635/1-645 KMKMDVRNFQ MHRSEVVDRS KFCGLCNIIF SSPVVAQSHY VGKVHAKKLK 151 200 ENSP00000361868/1-638 QLMEEHDQAS PSGFQPEM-- ---------- ---------- ---------- ENSBTAP00000004683/1-623 QLMEERGQVS PSRFQPAT-- ---------- ---------- ---------- ENSTTRP00000015797/1-598 QLMEEHDQVS PSGFQPEM-- ---------- ---------- ---------- bmy_22354T0/1-582 --MEEHDQVS PSGFQPEMGV PITTSAESTF LKPLVVKPPP AGIKDETMPS BACU012635/1-645 QLMEEHDQVS PSGFQPEMGV PITTSAESTF LKPLVVKPPP GGIKDETMPS 201 250 ENSP00000361868/1-638 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004683/1-623 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015797/1-598 ---------- ---------- ---------- ---------- ---------- bmy_22354T0/1-582 SSSSALDLNN PNKYCKLCPA SFNSPLMAQQ HYVGKKHKRN EARKKFVAKI BACU012635/1-645 SSSSALDLNN PNKYCKLCPA SFNSPLMAQQ HYVGKKHKRN EARKKFVAKI 251 300 ENSP00000361868/1-638 ---------- --AFSMRTYV CHICSIAFTS LDMFRSHMQG SEHQIKESIV ENSBTAP00000004683/1-623 ---------- --AFSMRTYD CRICNITFTS LEMFRSHMQG SEHQLKESIV ENSTTRP00000015797/1-598 ---------- --AFSMKTYV CHICNITFTS LEMFRSHMQG SEHQIKESIV bmy_22354T0/1-582 REKPLPAKSD ANAFSMKTYV CHICNITFTS LEMFRSHMQG SEHQIKESIV BACU012635/1-645 REKPLPAKSD ANAFSMKTYV CHICNITFTS LEMFRSHMQG SEHQIKESIV 301 350 ENSP00000361868/1-638 INLVKNSRKT QDSYQNECAD YINVQKARGL EAKTCFRKME ESSLETRRYR ENSBTAP00000004683/1-623 INLVKKSRKP PESCQDEYTD YIKVQKARGS EPKTCFRKME EGSLEARGYR ENSTTRP00000015797/1-598 TNLVKNPKKP PDSYQDESAD YIKVQKTRGP EPKTYFRKME ETSLEACRYR bmy_22354T0/1-582 TNLVKNPKKP PDSYQDESTD YIKVQKARGP EPKTCFRKME ETSLETCRYR BACU012635/1-645 TNLVKNPKKP PDSYQDESTD YIKVQKARGP EPKTCFRKME ETSLETCRYR 351 400 ENSP00000361868/1-638 EVVDSRPRHR MFEQRLPFET FRTYAAPYNI SQAMEKQLPH -----SKKTY ENSBTAP00000004683/1-623 EAVDSRSRHR MFEQRSPGET FWTYPGPYNI SQTVENQLPH CLPAQSKKTY ENSTTRP00000015797/1-598 EAVDSRSRHR MFEQILPCET FWTYPGPYNI SQTVENQLPH CLPAHSKNTY bmy_22354T0/1-582 EAVDSRSRHR MFEQRLPCET SWTYPGSCNI SRTMENQLPH CLPAHSKNTY BACU012635/1-645 EAVDSRSRHR MFEQRLPCET SWTYPGSCNI SQTMENQLPH CLPAHSKNTY 401 450 ENSP00000361868/1-638 DSFQDELEDY IKVQKARGLD PKTCFRKMRE NSVDTHGYRE MVDSGPRSRM ENSBTAP00000004683/1-623 DSFQDELEDY IKAQKARGLD PKTCFRKERE SSVETHGYRE -IDSGPRPRM ENSTTRP00000015797/1-598 DSFQDELEDY IKVQKARGLD PKTCFRKISK SSVETHGYRE -VDSGPRSRM bmy_22354T0/1-582 DSFQDELEDY IKVQKARGLD PKTCFRKISE SSVETHGYRG -VDSGPRPRM BACU012635/1-645 DSFQDELEDY IKVQKARGLD PKTCFRKISE SSVETHGYRE -VDSGPRPRM 451 500 ENSP00000361868/1-638 CEQRFSHEAS QTYQRPYHIS PVESQLPQWL PTHSKRTYDS FQDELEDYIK ENSBTAP00000004683/1-623 CEQRYSFETS QTYQRPYTTS PVESQLYHWL PAQSKRTYNS FQDELEDYIK ENSTTRP00000015797/1-598 CEQRFSFETS QNSQRPYGTS PVGSQLHHSL PAHSKRSYDS FQDELEDYIK bmy_22354T0/1-582 CERRFSFETS QTSQRPYSTS PVESQLHHWL PAHSKRSYDS FQDELEDYIK BACU012635/1-645 CERRFSFETS QTSQRPYSTS PVESQLHHWL PAHSKRSYDS FQDELEDYIK 501 550 ENSP00000361868/1-638 VQKARGLEPK TCFRKIGDSS VETHRNREMV DVRPRHRMLE QKLPCETFQT ENSBTAP00000004683/1-623 VQKARGLEPK TSFRKISDSS VETHKHREMV DSRLRPRMFE QKLPFETFQT ENSTTRP00000015797/1-598 VQKARGLEPK TCFRNISKSS VETHKYREMV DSRPRHRMFE QRLPFETFQN bmy_22354T0/1-582 VQKARGLEPK TCFRKGRDSS VETHKYREMV DSRPRHRMFE QRLPFETFQN BACU012635/1-645 VQKARGLEPK TCFRKGRDSS VETHKYREMV DSRPRHRMFE QRLPCETFQN 551 600 ENSP00000361868/1-638 YSGPYSISQV VENQLPHCLP AHDSKQRLDS ISYCQLTRDC FPEKPVPLSL ENSBTAP00000004683/1-623 YPGSYSISQA EENLLPHPLP THDKKQRLDP VTYCQPTRDY FPEKPVPLSL ENSTTRP00000015797/1-598 YPVSYSISQA AEKQLPHCLP THDSKQRLDS MTYCQPTRDY FPEKPVPLSL bmy_22354T0/1-582 YPRSSNISQA AENQLPHCLP AHDSKQRLDS MTYCQPTRDY FPEKPVPLSL BACU012635/1-645 YPRSSNISQA VENQLPHCLP AHDSKQSLDS MTYCQPTRDY FPEKPVHLSL 601 650 ENSP00000361868/1-638 NQQENNSGSY SVESEVYKHL SSENNTADHQ AGHKQKHQKR KRHLEEGKER ENSBTAP00000004683/1-623 SQQDNNSGTY SVESEVYKHL SSGNDTSEHQ AGRKRKHQKR RRHMEKGEER ENSTTRP00000015797/1-598 SQQENNSGPY SVESEVYKHL SLENNTSDHE ASHTRKHQKR R-HLEEGEEK bmy_22354T0/1-582 SQQENNSGPY SVESEVYKHL SSENNTSDHE ASHTRKHQKR RRHLEEGEEK BACU012635/1-645 XXXXXXXXXY SVESEVYKHL SSENNTSDHE ASHTRKHQKR RGHLEEGEEK 651 700 ENSP00000361868/1-638 PEKEQSKHKR KKSYEDTDLD KDKSIRQRKR EEDRVKVSSG KLKHRKKKKS ENSBTAP00000004683/1-623 PEKEQSKHKR KKGYGDTGLD KDKGTGEGKR GREKLSVSSG KLKHRKKKKS ENSTTRP00000015797/1-598 PEKEQSKHKR KKSYGDTDLD KDKSIQKRKR EGDK--VSSG KLKHRKKKKR bmy_22354T0/1-582 PEKEQSKHKR KKSYGDTDLD KDKSIQERKR EGDK--VSSG KLKHRKKKKS BACU012635/1-645 PEKEQSKHKR KKSYGDTDLD KDKSIQERKR EGDK--VSSG KLKHRKKKKS 701 750 ENSP00000361868/1-638 HDVPSEKEER KHRKEKKKSV EERTEEEMLW DESILGF ENSBTAP00000004683/1-623 HGVPSQKEER KHKKEKKKPV EEKTEEEMLW DESILGF ENSTTRP00000015797/1-598 HGVPSEKEEH KHKKEKKKSV EEKTEEEMLW DESILGF bmy_22354T0/1-582 HGVPSKKEEH KHKKEKKKSV EEKTEEEMLW DESILGF BACU012635/1-645 HGVPSKKEEH KHKKEKKKSV EEKTEEEMLW DESILGF