KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:34 2014 Check: 00 .. Name: ENSTTRP00000015488/1-1070 Len: 1075 Check: 9541 Weight: 1.00 Name: ENSP00000271643/1-1074 Len: 1075 Check: 8216 Weight: 1.00 Name: ENSBTAP00000004686/1-1070 Len: 1075 Check: 2970 Weight: 1.00 Name: bmy_11146T0/1-1062 Len: 1075 Check: 6408 Weight: 1.00 Name: BACU007229/1-730 Len: 1075 Check: 6713 Weight: 1.00 // 1 50 ENSTTRP00000015488/1-1070 MEKWAGRPRM CLMLLLFLPQ LCLDQEXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000271643/1-1074 MENWTGRPWL YLLLLLSLPQ LCLDQEVLSG HSLQTPTEEG QGPEGVWGPW ENSBTAP00000004686/1-1070 MEKWAGRPQL CLMLLLSLPQ LCLDQEVLSG HSLQTPPEES QGPEGVWGPW bmy_11146T0/1-1062 MEKWAGRSRL CLMLLLFLPQ LCLDQE---- ----TPPEEN QGPEGVWGPW BACU007229/1-730 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015488/1-1070 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000271643/1-1074 VQWASCSQPC GVGVQRRSRT CQLPTVQLHP SLPLPPRPPR HPEALLPRGQ ENSBTAP00000004686/1-1070 DQWASCSQPC GVGVQRRSRT CQLPTTQLHQ GLPLPPRPPR HPEALLPRGQ bmy_11146T0/1-1062 DQWASCSQPC GVGVQRRSRT CQLPTAQLHQ GLPLPPRPPR HPEALLPRGQ BACU007229/1-730 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000015488/1-1070 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXSRVRD ENSP00000271643/1-1074 GPRPQTSPET LPLYRTQSRG RGGPLRGPAS HLGREETQEI RAARRSRLRD ENSBTAP00000004686/1-1070 GTRPQTSRET LPLYRPPPRG RGGPLRGPAS QLGREEAPET QGARRSRVRD bmy_11146T0/1-1062 GTRPHTSRET LPLYRPPPRG RGGPLRGPAS HLGREEAQEI EGARRSRVRD BACU007229/1-730 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000015488/1-1070 PIKPGMFGYG RVPFALPLHR NRRHPRRPPS SELSQTSD-- ---LPSLTPR ENSP00000271643/1-1074 PIKPGMFGYG RVPFALPLHR NRRHPRSPPR SELSLISSRG EEAIPSPTPR ENSBTAP00000004686/1-1070 PIKPGMFGYG RVPFALPLHR NRRHPRRPPR SELSQTSD-- ---LPSLTPR bmy_11146T0/1-1062 PIKPGMFGYG RVPFALPLHR NRRHPRRPPS FELSKTSD-- ---LPSLTPR BACU007229/1-730 --------MD RVPV------ ---------- -----VSD-- ---AASVPPS 201 250 ENSTTRP00000015488/1-1070 TEPSSANHTP QTELPPTEPS AHTPSPPGEP PSPEAAQTEV PSRTRPALTW ENSP00000271643/1-1074 AEPFSANGSP QTELPPTELS VHTPSPQAEP LSPETAQTEV APRTRPAPLR ENSBTAP00000004686/1-1070 TEPSSSNHTQ KTELSPTEPS AHTLPPQAEP PSPEAAQTAV PSRARPAPTG bmy_11146T0/1-1062 TEPSSANHTP QTELPPTEPS AHTLSPPGEP PSPEAAQTEV PSRTRPALTR BACU007229/1-730 ALP------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000015488/1-1070 PHPRAQASGT EPSLFPPSPG EGSSFHMSPQ PRRPSSQGWA GPRLAERHPN ENSP00000271643/1-1074 HHPRAQASGT EPPSPTHSLG EGGFFRASPQ PRRPSSQGWA SPQVAGRRPD ENSBTAP00000004686/1-1070 PHPRAQASGT ESSFHSPSPG EGSSFHLSLQ PRRPSSQGWA SPRLADRHPN bmy_11146T0/1-1062 PHPRAQASGT EPSLFPPSPG EGSSFHMSPQ PRRPSSQGWA GPRLAERHPN BACU007229/1-730 ------GSGA LTPLYPP--- --------PQ P--------- ---------- 301 350 ENSTTRP00000015488/1-1070 PFLSVPRSRG QQSQEHWRPG GNLHGSLTES APHYPDGWLP LLSAGPHSSP ENSP00000271643/1-1074 PFPSVPRGRG QQGQGPWGTG GTPHGPRLEP DPQHPGAWLP LLSNGPHASS ENSBTAP00000004686/1-1070 PFLSVPWGRG QQSQEQWRPG GNLHGSLTES APPQPDGWLP LLSSGPHSSP bmy_11146T0/1-1062 PFLSVPRSRG QQSREHWRPG GNLHGSLTES VPHYPDGWLP LLSAGPHSSP BACU007229/1-730 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000015488/1-1070 LWSLFAPSSP VPRCSGESEQ LRACSQAPCP PEQPDPRALQ CAAFDSQEFM ENSP00000271643/1-1074 LWSLFAPSSP IPRCSGESEQ LRACSQAPCP PEQPDPRALQ CAAFNSQEFM ENSBTAP00000004686/1-1070 LWSLFAPSSP VPRCSGESEQ LRACSQAPCP AEQPDPRALQ CAAFDSQEFM bmy_11146T0/1-1062 LWSLFAPSSP VPRCSGESEQ LRACSQAPCP PEQPDPRALQ CAAFDSQEFM BACU007229/1-730 ---------- ---------- --------CP PEQPDPRALQ CAAFDSQEFM 401 450 ENSTTRP00000015488/1-1070 GQLYQWEPFT EVQGSQRCEL NCRPRGFRFY VRHTEKVQDG TLCQPGAPDI ENSP00000271643/1-1074 GQLYQWEPFT EVQGSQRCEL NCRPRGFRFY VRHTEKVQDG TLCQPGAPDI ENSBTAP00000004686/1-1070 GQLYQWEPFT EVQGSQRCEL NCRPRGFRFY VRHTQKVQDG TLCQPGSLDI bmy_11146T0/1-1062 GQLYQWEPFT EVQGSQRCEL NCRPRGFRFY VRHTEKVQDG TLCQPGAPDI BACU007229/1-730 GQLYQWEPFT EVQGSQRCEL NCRPRGFRFY VRHTEKVQDG TLCQPGAPDI 451 500 ENSTTRP00000015488/1-1070 CVAGRCLSPG CDGILGSGRR PDGCGVCGGD DSTCRLISGN LTDRGGPLGY ENSP00000271643/1-1074 CVAGRCLSPG CDGILGSGRR PDGCGVCGGD DSTCRLVSGN LTDRGGPLGY ENSBTAP00000004686/1-1070 CVAGRCLSPG CDGILGSGRH PDGCGVCGGD DSTCRLVLGN LTERGGPLGY bmy_11146T0/1-1062 CVAGHCLSPG CDGILGSGRR PDGCGVCGGD DSTCRLVSGN LTDRGGPLGY BACU007229/1-730 CVAGHCLSPG CDGILGSGRR PDGCGVCGGD DSTCRLVSGN LTDRGGPLGY 501 550 ENSTTRP00000015488/1-1070 QKILLIPAGA SRLWIAQLRP SSNYLALRGP GGRSIINGNW AVDPPGSYAA ENSP00000271643/1-1074 QKILWIPAGA LRLQIAQLRP SSNYLALRGP GGRSIINGNW AVDPPGSYRA ENSBTAP00000004686/1-1070 QKILSIPAGA SRLQIAQLRP SSNYLALRGP GGRSIINGNW AVDPPGSYTA bmy_11146T0/1-1062 QKILMIPAGA SRLRIAQLRP SSNYLALRGP GGRSIINGNW AVDPPGSYAA BACU007229/1-730 QKILLIPAGA SRLRIAQLRP SSNYLALRGP GGRSIINGNW AVDPPGSYAA 551 600 ENSTTRP00000015488/1-1070 GGTVFRYSRP PREEGVGESL SAEGPTTQPV DVYMIFQEEN PGVFYQYVIS ENSP00000271643/1-1074 GGTVFRYNRP PREEGKGESL SAEGPTTQPV DVYMIFQEEN PGVFYQYVIS ENSBTAP00000004686/1-1070 GGTVFRYNRP PREEGAGESL SAEGPTTQPV DVYMIFQEEN PGVFYQYVIS bmy_11146T0/1-1062 GGTVFRYSRP PREEGVGESL SAEGPTTQPV DVYMIFQEEN PGVFYQYVIS BACU007229/1-730 GGTVFRYSRP PREEGVGESL SAEGPTTQPV DVYMIFQEEN PGVFYQYVIS 601 650 ENSTTRP00000015488/1-1070 SPPPNLENPT PEPRLPQLQP EVLRGEPPPA SVPRPARTPG TLQRQVRIPQ ENSP00000271643/1-1074 SPPPILENPT PEPPVPQLQP EILRVEPPLA PAPRPARTPG TLQRQVRIPQ ENSBTAP00000004686/1-1070 SPPPNLENPT PEPRVPQLQP EILRVEPPPV SAPRPARTPG TLQRQVRIPQ bmy_11146T0/1-1062 SPPPNLENPT PEPRLPQLQP EVLRGEPPPA SVPRPARTPG TLQRQVRIPQ BACU007229/1-730 SPPPNLENPT PEPRLPQLQP EVLRGEPPPA SVPRPARTPG TLQRQVRIPQ 651 700 ENSTTRP00000015488/1-1070 MPAPPHPRTP LGSPAGYWKR VGHSECSASC GKGVWRPVFL CISRESGEEL ENSP00000271643/1-1074 MPAPPHPRTP LGSPAAYWKR VGHSACSASC GKGVWRPIFL CISRESGEEL ENSBTAP00000004686/1-1070 MPAPPPPRTP LGSPAGYWKR VGHSECSASC GKGVWRPIFL CISRESGEEL bmy_11146T0/1-1062 MPAPPHPRTP LGSPAGYWKR VGHSECSASC GKGVWRPVFL CISRESGEEL BACU007229/1-730 MPAPPHPRTP LGSPAGYWKR VGHSECSASC GKGVWRPVFL CISRESGEEL 701 750 ENSTTRP00000015488/1-1070 DERSCAVGTR PPASQEPCHG PPCPPYWEAG EWTSCSRSCG PGTQHRQLRC ENSP00000271643/1-1074 DERSCAAGAR PPASPEPCHG TPCPPYWEAG EWTSCSRSCG PGTQHRQLQC ENSBTAP00000004686/1-1070 DERSCAMGAR PPASQEPCHG PPCPPYWEAG EWTSCSRSCG PGTQHRQLRC bmy_11146T0/1-1062 DERSCAVGTR PPASQEPCHG PPCPPYWEAG EWTSCSRSCG PGTQHRQLRC BACU007229/1-730 DERSCAVGTR PPASQEPCHG PPCPPYWEAG EWTSCSRSCG PGTQHRQLRC 751 800 ENSTTRP00000015488/1-1070 RQEFGGGGSS VPLERCGHLP RPNITQPCQL RLCGRWEVRS PWSQXXXXXX ENSP00000271643/1-1074 RQEFGGGGSS VPPERCGHLP RPNITQSCQL RLCGHWEVGS PWSQCSVRCG ENSBTAP00000004686/1-1070 RQEFGGGGSS VPLERCGHLP RPNITQPCQL RLCGHWEVRS PWSQCSVRCG bmy_11146T0/1-1062 RQEFGGGGSS VPLERCGHLP RPNITQPCQL RLCGXWEVRS PWSQCSVRCG BACU007229/1-730 RQEFGGGGSS VPLERCGHLP RPNITQPCQL RLCGRWEVRS PWSQCSVRCG 801 850 ENSTTRP00000015488/1-1070 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000271643/1-1074 RGQRSRQVRC VGNNGDEVSE QECASGPPQP PSREACDMGP CTTAWFHSDW ENSBTAP00000004686/1-1070 RGQRSRQVRC VGNNGDEVSE QECASGPPRP PSREACDMGP CTTAWFHSDW bmy_11146T0/1-1062 RGQRSRQVRC VGNNGDEVSE QECVSGPPRP PSREACDMGP CTTAWFHSDW BACU007229/1-730 RGQRSRQVRC VGNNGDEVSE QECVSGPPRP PSREACDMGP CTTAWFHSDW 851 900 ENSTTRP00000015488/1-1070 XXXCSAECGT GIQRRSVICL GSGETHGEGQ EEAGAGATEQ TCAPGSRPPD ENSP00000271643/1-1074 SSKCSAECGT GIQRRSVVCL GSGAALGPGQ GEAGAGTG-Q SCPTGSRPPD ENSBTAP00000004686/1-1070 SSKCSAECGT GIQRRSVVCL GSGEAHGISQ EEAGAGAGEQ TCAPGSRPPD bmy_11146T0/1-1062 SSKCSAECGT GIQRRSVVCL GSGETHGEGQ EEAGAGATEQ TCAPGSRPPD BACU007229/1-730 SSKCSAECGT GIQRRSVVCL GSGETHGEGQ EETGTGATEQ TCAPGSRPPD 901 950 ENSTTRP00000015488/1-1070 MRACSLGPCE VTWCWYTGPW AECSSECGSG TQRRDIICVS KLGTEFNVTS ENSP00000271643/1-1074 MRACSLGPCE RTWRWYTGPW GECSSECGSG TQRRDIICVS KLGTEFNVTS ENSBTAP00000004686/1-1070 MRACSLGPCE VSWCWYTGPW AECSSECGSG TQRRDVICVS KLGTEFNVTS bmy_11146T0/1-1062 MRACSLGPCE VTWCWYTGPW AECSSECGSG TQRRDIICVS KLGTEFNVTS BACU007229/1-730 MRACSLGPCE VTWCWYTGPW AECSSECGSG TQRRDIICVS KLGTEFNVTS 951 1000 ENSTTRP00000015488/1-1070 PSNCSHLPRP PALQPCQGQD CQDRWFSTPW SPCSRSCQGG MQTREVQCLT ENSP00000271643/1-1074 PSNCSHLPRP PALQPCQGQA CQDRWFSTPW SPCSRSCQGG TQTREVQCLS ENSBTAP00000004686/1-1070 PSNCSHLPRP PALQPCQGQD CQDRWFSTPW SPCSRSCQGG VQTREVQCLT bmy_11146T0/1-1062 PSNCSHLPRP PALQPCQGQD CQDRWFSTPW SPCSRSCQGG MQTREVQCLT BACU007229/1-730 PSNCSHLPRP PALQPCQGQD CQDRWFSTPW SPCSRSCQGG VQTREVQCLT 1001 1050 ENSTTRP00000015488/1-1070 ANQTLSIRCP PHLRPSRKRS CNSQPCSQRP DDQCKDSSPH CPLVVQARLC ENSP00000271643/1-1074 TNQTLSTRCP PQLRPSRKRP CNSQPCSQRP DDQCKDSSPH CPLVVQARLC ENSBTAP00000004686/1-1070 ANQTLSIRCP LHLRPARKRS CNSQPCSQRP DDQCKDSSPH CPLVVQARLC bmy_11146T0/1-1062 ANQTLSIRCP PHLRPSRKRS CNSQPCSQRP DDQCKDSSPH CPLVVQARLC BACU007229/1-730 ANQTLSIRCP PHLRPSRKRS CNSQPCSQRP DDQCKDSSPH CPLVVQARLC 1051 1100 ENSTTRP00000015488/1-1070 VYPYYTATCC RSCAHVLERS PPEPA ENSP00000271643/1-1074 VYPYYTATCC RSCAHVLERS PQDPS ENSBTAP00000004686/1-1070 VYPYYTATCC RSCAHVLERS SPEPA bmy_11146T0/1-1062 VYPYYTATCC RSCAHVLERS PPEPA BACU007229/1-730 VYPYYTATCC RSCAHVLERS PPEPA