KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:36 2014 Check: 00 .. Name: ENSTTRP00000008045/1-259 Len: 622 Check: 4178 Weight: 1.00 Name: ENSBTAP00000004699/1-552 Len: 622 Check: 5234 Weight: 1.00 Name: ENSP00000322323/1-584 Len: 622 Check: 881 Weight: 1.00 Name: bmy_08929T0/1-318 Len: 622 Check: 1431 Weight: 1.00 Name: BACU005471/1-489 Len: 622 Check: 8046 Weight: 1.00 // 1 50 ENSTTRP00000008045/1-259 MKMILV---- ---------- ---------- ----RRRVLX XXXXXXXXXX ENSBTAP00000004699/1-552 ---------- ---------- ---------- ----RAGARP SGEPGCSCAQ ENSP00000322323/1-584 MKMMLVRRFR VLILMVFLVA CALHIALDLL PRLERRGARP SGEPGCSCAQ bmy_08929T0/1-318 ---------- ---------- ---------- ---------- ---------- BACU005471/1-489 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008045/1-259 XXXXXXXXXX XXXGARTPRE PPAATSDADD ASRPNKHTLR IMQDFSSDPS ENSBTAP00000004699/1-552 PAAEAAAPGW AQARGHPGGE LEAAASAAGD AGWPNKHTLR ILQDFSSDPS ENSP00000322323/1-584 PAAEVAAPGW AQVRGR-PGE PPAASSAAGD AGWPNKHTLR ILQDFSSDPS bmy_08929T0/1-318 ---------- ---------- ---------- ---------- ---------- BACU005471/1-489 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000008045/1-259 SNLTSH-LEK LPPAAEPVEG ASPGQDPGAL RPLDPGHRPL LRGHGTRGPV ENSBTAP00000004699/1-552 SNLTSHSLEK LPPAAEAAEG APPGQDPGVR RPPDPAHRPL PRDPGPRGPV ENSP00000322323/1-584 SNLSSHSLEK LPPAAEPAER ALRGRDPGAL RPHDPAHRPL LRDPGPRRSE bmy_08929T0/1-318 ---------- ---------- ---------- ---------- -----TR--- BACU005471/1-489 --------MN GPESQQEALN GLAGGASGAR AAAAPRAGAS GRIPGKA--- 151 200 ENSTTRP00000008045/1-259 PPPGPSGDGS LLARLFQHPL YQAAIPPLTE DDVLFNVNSD IRFNPK--AA ENSBTAP00000004699/1-552 LPPGLSGDGS LLTRLFQHPL YQVPIPPLTE GDVLFNVNSD IRFNPKAATA ENSP00000322323/1-584 SPPGPGGDAS LLARLFEHPL YRVAVPPLTE EDVLFNVNSD TRLSPK--AA bmy_08929T0/1-318 ---------- ---------- ------PLPL GGFLFD---- ---------- BACU005471/1-489 ---------- ---------- -QVAIPPLTE DDVLFNVNSD IRFNPKAAAA 201 250 ENSTTRP00000008045/1-259 ENPDWPHEGP ED-EFLPTGD TAVDSYPNWL KFHIGINRYE LYSRHNPAVE ENSBTAP00000004699/1-552 ENPDWPHEGP ED-EFLPTGE AAVDSYPNWL KFHIGINRYE LYSRHNPAVG ENSP00000322323/1-584 ENPDWPHAGA EGAEFLSPGE AAVDSYPNWL KFHIGINRYE LYSRHNPAIE bmy_08929T0/1-318 ---------- ---------- ---------- ---------- ---------- BACU005471/1-489 ENPDWPREGP ED-EFLPTGD AAVDSYPNWL KFHIGINRYE LYSRHNPAVE 251 300 ENSTTRP00000008045/1-259 ALLRDLGAQK ITSVAMKSGG TQLKLIMTFQ NYGQALFKPM K--------- ENSBTAP00000004699/1-552 ALLQDLGTQK ITSVAMKSGG TQLKLIMTFQ NYGQALFKPM KQTREQETPP ENSP00000322323/1-584 ALLHDLSSQR ITSVAMKSGG TQLKLIMTFQ NYGQALFKPM KQTREQETPP bmy_08929T0/1-318 ---------- ---------- ---KLLFC-- ----SIFS-- RQTREQETPP BACU005471/1-489 ALLHDLGAQK ITSVAMKSGG TQLKLIMTFQ NYGQALFKPM KQTREQETPP 301 350 ENSTTRP00000008045/1-259 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004699/1-552 DFFYFSDYER HNAEIAAFHL DRILDFRRVP PVAGRLVNMT KEIRDVTRDK ENSP00000322323/1-584 DFFYFSDYER HNAEIAAFHL DRILDFRRVP PVAGRMVNMT KEIRDVTRDK bmy_08929T0/1-318 DFFYFSDYER HNAEIAAFHL DRILDFRRVP PVAGRMVNMT KEIRDVTRDK BACU005471/1-489 DFFYFSDYER HNAEIAAFHL DRILDFRRVP PVAGRMVNMT KEIRDVTRDK 351 400 ENSTTRP00000008045/1-259 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004699/1-552 KLWRTFFISP ---------- ---------- ---------- -----ANNVC ENSP00000322323/1-584 KLWRTFFISP ---------- ---------- ---------- -----ANNIC bmy_08929T0/1-318 KLWRTFFISP ---------- ---------- ---------- -----ANNIC BACU005471/1-489 KLWRTFFISP GRCRDRPLTP PSGHKFNTQP QNCCSPCSEE TEAQRANNIC 401 450 ENSTTRP00000008045/1-259 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004699/1-552 FYGECSYYCS TEHALCGKPD QIEGSLAAFL PDLALAKRKT WRNPWRRSYH ENSP00000322323/1-584 FYGECSYYCS TEHALCGKPD QIEGSLAAFL PDLSLAKRKT WRNPWRRSYH bmy_08929T0/1-318 FYGECSYYCS TEHALCGKPD QIEGSLAAFL PDLSLAKRKT WRNPWRRSYH BACU005471/1-489 FYGECSYYCS TEHALCGKPD QIEGSLAAFL PDLSLAKRKT WRNPWRRSYH 451 500 ENSTTRP00000008045/1-259 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004699/1-552 KRKKAEWEVD PDYCEEVRQT PPYDSSHRLL DVMDMTIFDF LMGNMDRHHY ENSP00000322323/1-584 KRKKAEWEVD PDYCEEVKQT PPYDSSHRIL DVMDMTIFDF LMGNMDRHHY bmy_08929T0/1-318 KRKKAEWEVD PDYCEEVKQT PPYDSSHRIL DVMDMTIFDF LMGNMDRHHY BACU005471/1-489 KRKKAEWEVD PDYCEEVKQT PPHDSSHRIL DVMDMTIFDF LMGNMDRHHY 501 550 ENSTTRP00000008045/1-259 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004699/1-552 ETFEKFGNET FIIHLDNGRG FGKHSHDELS ILVPLQQCCR IRRSTYLRLQ ENSP00000322323/1-584 ETFEKFGNET FIIHLDNGRG FGKYSHDELS ILVPLQQCCR IRKSTYLRLQ bmy_08929T0/1-318 ETFEKFGNKT FIIHLDNGRG FGKYSHDELS ILVPLQQCCR IRRSTYLRLQ BACU005471/1-489 ETFEKFGNKT FIIHLDNGRG FGKYSHDELS ILVPLQQCCR IRRSTYLRLQ 551 600 ENSTTRP00000008045/1-259 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004699/1-552 LLAQEEHRLS LLMAEALRAD RVAPVLFQPH LEALDRRLRI VLRAVGDCVE ENSP00000322323/1-584 LLAKEEYKLS LLMAESLRGD QVAPVLYQPH LEALDRRLRV VLKAVRDCVE bmy_08929T0/1-318 LLAKEEYKLS LLMAESLRRD RVAPVLYQPH LEALDRRLRV VLQAVRDCME BACU005471/1-489 LLAKEEHKLS LLMAESLRGD RVAPVLFQPH LEALDRRLRV VLQAVRDCVE 601 650 ENSTTRP00000008045/1-259 ---------- ---------- -- ENSBTAP00000004699/1-552 KDGLHSVVED DLGPEHRAAA GR ENSP00000322323/1-584 RNGLHSVVDD DLDTEHRAAS AR bmy_08929T0/1-318 KDGLHSVVED DLSPEHRASA RR BACU005471/1-489 KDGLHSVVED DLSPEHRASA RR