KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:38 2014 Check: 00 .. Name: ENSTTRP00000010753/1-1501 Len: 1587 Check: 4526 Weight: 1.00 Name: ENSP00000350162/1-1530 Len: 1587 Check: 976 Weight: 1.00 Name: ENSBTAP00000004704/1-1516 Len: 1587 Check: 4423 Weight: 1.00 Name: bmy_10628T0/1-1379 Len: 1587 Check: 2809 Weight: 1.00 Name: BACU011274/1-695 Len: 1587 Check: 1785 Weight: 1.00 // 1 50 ENSTTRP00000010753/1-1501 ---------- ---------- ------MPIR P-NLQ----- -QLEKCIDNA ENSP00000350162/1-1530 ---------- ---------- ------MPIR P-DLQ----- -QLEKCIDDA ENSBTAP00000004704/1-1516 ---------- ---------- ------MPIR P-DLQ----- -QLEKCIDDA bmy_10628T0/1-1379 ---------- ---------- ------MPVR P-DLQ----- -QLEKCIDDA BACU011274/1-695 MTEDASTGRN HEIEGDAGGD AAGRAGLPER ARNLQLSFRN DQLEKCIDDA 51 100 ENSTTRP00000010753/1-1501 LRKNDFKPLK TLLQIDICED VKIKCSKQFF HKLDDLMCRE LNKKDIQTVS ENSP00000350162/1-1530 LRKNDFKPLK TLLQIDICED VKIKCSKQFF HKVDNLICRE LNKEDIHNVS ENSBTAP00000004704/1-1516 LRKNDFKPLK TLLQIDICED VKIKCSKQFF HKLDDLMCRE LNKRDIQTVS bmy_10628T0/1-1379 LRKNDFKPLK TLLQIDICED MKIKCSKQFF HKLDNLMCR- ---------- BACU011274/1-695 LRKNDFKPLK TLLQIDICED VKIKCSKQFF HKLDNLMCR- ---------- 101 150 ENSTTRP00000010753/1-1501 TILVSFGRCG KNISILGKAG LLTMIKQGLV QKMVTWFEKS KEIILSQGNS ENSP00000350162/1-1530 AILVSVGRCG KNISVLGQAG LLTMIKQGLI QKMVAWFEKS KDIIQSQGNS ENSBTAP00000004704/1-1516 TILVSFGRCG KNITILGQAG LLTMIKQGLV QKMVAWFEKS KEIILSRGNS bmy_10628T0/1-1379 ---------- ---------- ---------- --VYCLYEYI LKIIKIE--- BACU011274/1-695 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000010753/1-1501 KDEAV--MIE DLFELLMVIH DMDDEGRRQV VESFIPRICA LVIDSRVNIC ENSP00000350162/1-1530 KDEAVLNMIE DLVDLLLVIH DVSDEGKKQV VESFVPRICS LVIDSRVNIC ENSBTAP00000004704/1-1516 KDEAVINMIE DIFDLLMVIH DIDDEGKRQI VESFVPRICA LVIDSRVNIC bmy_10628T0/1-1379 ---------- -----FKVIH DIDDEGKRQV VESFIPRICA LVIDSRVNIC BACU011274/1-695 ---------- -------VIH DIDDEGKRQV VESFIPRICA LVIDSRVNIC 201 250 ENSTTRP00000010753/1-1501 IQQEALKKMN AMLDKMPEDA RKILSNQEML ILMSSMGERI LDAGDYDLQV ENSP00000350162/1-1530 IQQEIIKKMN AMLDKMPQDA RKILSNQEML ILMSSMGERI LDAGDYDLQV ENSBTAP00000004704/1-1516 IQQETLKKMN VMLDRMPQDA RKILCNQQML ILMSSMGERI LDAGDYDLQA bmy_10628T0/1-1379 IQQETLKIMN AMLDKMPQDA RKILSNQEML ILMSSMGERI LDAGDYDLQV BACU011274/1-695 IQQVGRR--- ---------- ---------- ---SSMGERI LDAGDYDLQV 251 300 ENSTTRP00000010753/1-1501 AIVEALCRMT PEEQREELAC QWFSMDFIAN AFKGIKVSEF ETDCRIFLNL ENSP00000350162/1-1530 GIVEALCRMT TEKQRQELAH QWFSMDFIAK AFKRIKDSEF ETDCRIFLNL ENSBTAP00000004704/1-1516 GIVEALCRMT TEKQRRELAC QWFSMDFIAN AFKGIKDSEF ETDCRIFLNL bmy_10628T0/1-1379 AIIEALCRMT TQKQRQELAC QWFSMDFIAN AFKGIKDSEF ETDCRIFLNL BACU011274/1-695 AIIEALCRMT TEKQRQELAC QWFSMDFIAN AFKGIKDTEF ETDCRIFLNL 301 350 ENSTTRP00000010753/1-1501 VNGMLGDKRX XXXXXXXXXX XXXXXLQIPS DEKLEGFWID FNLGSQTVSF ENSP00000350162/1-1530 VNGMLGDKRR VFTFPCLSAF LDKYELQIPS DEKLEEFWID FNLGSQTLSF ENSBTAP00000004704/1-1516 VNGMLGDKRR VFTFPCLSAF LDKYELQIPS DEKLEEFWVD FNLGSQTLSF bmy_10628T0/1-1379 VNGMLGDKRR VFTFPCLSAF LDKYELQIPS DEKLEGFWID FNLGSQTVSF BACU011274/1-695 VNGMLGDKRR ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000010753/1-1501 YIAEDNDNHQ WEAVTVPEEE VQIYSIEVRE SKKLLTIILK NKVKISKREG ENSP00000350162/1-1530 YIAGDNDDHQ WEAVTVPEEK VQIYSIEVRE SKKLLTIILK NTVKISKREG ENSBTAP00000004704/1-1516 YIAGDNDDHQ WEAVTVPEEK VQIYSIEVRE SKKLLTVILK NIVKISKREG bmy_10628T0/1-1379 YVAGDNDNHQ WEAVTVPEEE VQIYSIEVRE SKKLLTITLK NKVKVSEREG BACU011274/1-695 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000010753/1-1501 KELLLYFDAS LEITNVTQKV FGADKYREFT RKQGISVAKT SVHILFDASG ENSP00000350162/1-1530 KELLLYFDAS LEITNVTQKI FGATKHRESI RKQGISVAKT SLHILFDASG ENSBTAP00000004704/1-1516 KELLLYFDAS LEITNVAQKI FGGSKYKEFT RKQGISVAKT SVHILFDASG bmy_10628T0/1-1379 KELLLYFDAS LEITNVTQKI FGANKYREFT RKQGISVAKT SVHILFDASG BACU011274/1-695 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000010753/1-1501 SQILVPESQI SPVEEELVSL KEKANPQEEF AKPPKCIKNS NQGDIKNSQP ENSP00000350162/1-1530 SQILVPESQI SPVGEELVSL KEKSKSPKEF AKPSKYIKNS DKGNRNNSQL ENSBTAP00000004704/1-1516 SQILVPESQL SPVEEEHISL KETANLQEEF TKPAKYIKNS NQGYRKNSQP bmy_10628T0/1-1379 SQILVPESQI SPVEEELVSL KEKANPQEEF AKPPKYIKNS NQGDRKNSQP BACU011274/1-695 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000010753/1-1501 KIITPSKRKM SEASMIVPGS DRYTVRSPIF LVNTS-TLRR RRIKPPLQMT ENSP00000350162/1-1530 EKTTPSKRKM SEASMIVSGA DRYTMRSPVL FSNTSIPPRR RRIKPPLQMT ENSBTAP00000004704/1-1516 EIITPSKRKM SEASMIVPGA DRYTVRSPIL LVNTS-SPRK RRIKPPLQMM bmy_10628T0/1-1379 EIITPSKRKM SEASMIVPGA DRYTVRSPIL LVNTS-TPRR RRIKPPLQMM BACU011274/1-695 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000010753/1-1501 SSTEKPGASK TLENGVDNAV SLKSRPSEER NRGDNTDKHI ETDR--EKTE ENSP00000350162/1-1530 SSAEKPSVSQ TSENRVDNAA SLKSRSSEGR HRRDNIDKHI KTAKCVENTE ENSBTAP00000004704/1-1516 SSTEKPSVSK TSEQGVDYAV SLKSRPSEEK KRRDNTDKPI KAAKVVEKTE bmy_10628T0/1-1379 SSTEKPGASK TLENGVDNAV SLKSRPSEER NRGDNTDKHI ETAKVIEKTE BACU011274/1-695 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000010753/1-1501 NKDIEFPNQN FSELQEIVPD SQAVGKIDKP VLPGVLDNIC GNKMHFKWAR ENSP00000350162/1-1530 NKNVEFPNQN FSELQDVIPD SQAAEKRDHT ILPGVLDNIC GNKIHSKWAC ENSBTAP00000004704/1-1516 NKDTEFANQN FSELQEIVLD SQAAGRIDKP VLPDVLDSTC GDKMHSKWAC bmy_10628T0/1-1379 NKDIEFPNQN FSELQEIVPD SHAVGKIDKP VSPGVLDNIC GNKMHSKWAC BACU011274/1-695 ---------- ---------- ---------- -SPGVLDNIC GNKMHSKWAC 651 700 ENSTTRP00000010753/1-1501 WPPVTNINLC NNKRASTSSG DTFTQDIVIN KKLTKK--SS SISDD-ILEM ENSP00000350162/1-1530 WTPVTNIELC NNQRASTSSG DTLNQDIVIN KKLTKQKSSS SISDHNSEGT ENSBTAP00000004704/1-1516 WTPVTNIKLC NNQRASTSSR DTFNQDIVIN QKLPKQKSSS SISDDNSEET bmy_10628T0/1-1379 WTPVTNINLC NNQRASTSSG DTFNQDIVIN KKLTKQKSSS SISDDNSQEM BACU011274/1-695 WTPVTNINLC NNQRASTSSG GTFNQDTVIN KKLTKQKSSS SISDDNSQEM 701 750 ENSTTRP00000010753/1-1501 GKVQYGKXXX XXXXXXXXXX XXXXXXXXXX -XXXXXXXXX XXXXXXXXXX ENSP00000350162/1-1530 GKVKYKKEQT DHIKIDKAEV EVCKKHNQQQ -NHPKYSGQK NTENAKQSDW ENSBTAP00000004704/1-1516 EKVQYRKEIM QHNRTDKAEA DDCHRSRQQP -GHSTHSEEK SIENAKQSDW bmy_10628T0/1-1379 GKVQYGKEIM QHNKIHKAEV EVCKRNKQQQ LNHSKHLEEK NIENTKQSDW BACU011274/1-695 GKVQYGKERM QHNKIHKAEV EVCKRNKQQQ LNHSKHLEEK NIENTKQSDW 751 800 ENSTTRP00000010753/1-1501 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000350162/1-1530 PVESETTFKS VLLNKTIEES LIYRKKYILS KDVNTATCDK NPSASKNVQS ENSBTAP00000004704/1-1516 CIESETTFKS VLLNKTVEES VIYKKKYVLS KDVNTDTCDQ SPSPQKNAKS bmy_10628T0/1-1379 HIESETTFKS VLLNKTVEES VVCRKKYTLS KDVNTAICDK SPSPRKNAKS BACU011274/1-695 HIESETTFKS VLLNKTVEES VICRKKYTLS KDVNTAICDK SPSPRKNAKS 801 850 ENSTTRP00000010753/1-1501 XXXXXXXXXX XXXXXXXXXX XXREKSKGKG FTDAAESLIS QINKRYKPKD ENSP00000350162/1-1530 HRKAEKELTS ELNSWDSKQK KMREKSKGKE FTNVAESLIS QINKRYKTKD ENSBTAP00000004704/1-1516 RRKSGRRLTA EFNSWDLKQK NTREKSKGKG FTDAAESLIN QINKRYQPKD bmy_10628T0/1-1379 HRKSGKRLTS EFNSWBLKQK KMREESKGKG FSDAAESLIS QINKRYKPKD BACU011274/1-695 HRKSGKRLTS EFNSWDLKQK KM-------- ---------- ---------- 851 900 ENSTTRP00000010753/1-1501 GIKSTRKLKE SLIDSGFSNK SDLQLSKEKV QKKSYRQLKT TFVNVTAECP ENSP00000350162/1-1530 DIKSTRKLKE SLINSGFSNK PVVQLSKEKV QKKSYRKLKT TFVNVTSECP ENSBTAP00000004704/1-1516 SIQSARKSKE SLIESAFSKK T--FLSQEKV QKKSYRQLKT TFVNVTSECP bmy_10628T0/1-1379 GIKSTRKLKE SLIDSGFSNK SDLQLSKEKV QKKSYRQLKT TFVNVTSECP BACU011274/1-695 ---------- ---------- -------EKV QKKSYRQLKT TFVNVTSECP 901 950 ENSTTRP00000010753/1-1501 -NDVYNFNLN GADEPIIKLG IQEFQTTARE TCVDSSVTLL GLRNHDELEP ENSP00000350162/1-1530 VNDVYNFNLN GADDPIIKLG IQEFQATAKE ACADRSIRLV GPRNHDELKS ENSBTAP00000004704/1-1516 LDDVYNFNLS GADEPVIKLG MQEFQATARE ACMDNSITLV GLRNHDELEP bmy_10628T0/1-1379 LNDVYNFNLN GADEPIIKLG T--------- ---------- -VTNH----- BACU011274/1-695 LNDVYNFNLN GADEPIIKLG T--------- ---------- -VTNH----- 951 1000 ENSTTRP00000010753/1-1501 SLKTKDKRXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000350162/1-1530 SVKTKDKKII TNHQKKNLFS DTETEYRCDD SKTDISWLRE PKSKPQLIDY ENSBTAP00000004704/1-1516 SLKAKDKRIG SDCKKKNPFS DSDTEYRCDD SKTDISWLRE PKSKPLMMDY bmy_10628T0/1-1379 ---------- ---KKKNLFS DTDTEYRCDD SKTDISWLRE PKSKPQLIDY BACU011274/1-695 ---------- ---KKKNLFS DTDTEYKCDD SKTDISWLRE PKSKPQLIDY 1001 1050 ENSTTRP00000010753/1-1501 XXXXXXXXXX XX-XXXPSLE RGQPRSKM-- ---------- ---TPNKNIT ENSP00000350162/1-1530 SRNKNVKNHK SG-KSRSSLE KGQPSSKM-- ---------- ---TPSKNIT ENSBTAP00000004704/1-1516 SRNKNVKKHK NGKKSRPSLE RAQPRSKM-- ---------- ---TSNKIIT bmy_10628T0/1-1379 SRNKNVKKHK SG-KSRPSLE RGQPRSKMVF LISFPFSLSY FSYTPNKNIT BACU011274/1-695 SRNKNVKKHK SG-K------ ---------- ---------- ---------- 1051 1100 ENSTTRP00000010753/1-1501 KKVDETVPEG RMRLPRRAAE TKKNYKDLSN SESESEQEFS HSFKE---IV ENSP00000350162/1-1530 KKMDKTIPEG RIRLPRKATK TKKNYKDLSN SESECEQEFS HSFKENIPVK ENSBTAP00000004704/1-1516 KKVDETVAYG RTRLPRRAAK TKKNYKDLSN SESEGEQEFS CSFKEKVLVQ bmy_10628T0/1-1379 KKVDETVPDG RTRLPRRAAE TKKNYKDLSN SESESEQEFS HSFKEKVLVK BACU011274/1-695 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000010753/1-1501 KEKIHSRRKT MKLPKKQQNP FTAETQEDVS KEWKNSPLLK DTIRDNNLDL ENSP00000350162/1-1530 EENIHSRMKT VKLPKKQQKV FCAETEKELS KQWKNSSLLK DAIRDNCLDL ENSBTAP00000004704/1-1516 NEKIHSRSKT MKLPKKQQNS FTAKTQKDVS KEWKISSLLK NAGRDNSLDP bmy_10628T0/1-1379 EEKIHSRRKT MKLPKKQQNS FTAETQEDVS KEWKNSSLLK DTIRDNSLDL BACU011274/1-695 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000010753/1-1501 SPVTLSGSPS SIEVMR--CI EKITERDFSQ DYGCITKSVS PYPKISSPES ENSP00000350162/1-1530 SPRSLSGSPS SIEVTR--CI EKITEKDFTQ DYDCITKSIS PYPKTSSLES ENSBTAP00000004704/1-1516 SPVSLSGSPS SIEVMR--CV EKITERDFTQ DCDCVAE--S PDPKTSSPES bmy_10628T0/1-1379 SPVTLSGSPS SIEVMRYVSI EKVTERDFTQ DYGCITKPVS PCPKISSPES BACU011274/1-695 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000010753/1-1501 L--NSGDGSP VKSPKNSEKN LLCTRESCSP IPRSFFLPK- ----NNTIVN ENSP00000350162/1-1530 LNSNSGVGGT IKSPKNNEKN FLCASESCSP IPRPLFLPRH TPTKSNTIVN ENSBTAP00000004704/1-1516 L--NSGVGGP IKSSKNSEKN LLCTRESSS- IAQSLFLVRK EKFLNSMTIN bmy_10628T0/1-1379 L--NSGVGSP IKSPKNSEKN LLRTRESCSP IPRSFFL--- ---------- BACU011274/1-695 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSTTRP00000010753/1-1501 RNNINSVVLI QEIQNCNSYS DVSSYSSEK- FMEIEPPHEN H---ISKRGE ENSP00000350162/1-1530 RKKISSLVLT QETQNSNSYS DVSSYSSEER FMEIESPHIN ENYIQSKREE ENSBTAP00000004704/1-1516 LMNYNTVVNR SNTHNCNSYS DVNSYTSGKI YLLSETSLLT QRNQTPNKEE bmy_10628T0/1-1379 ---------- ---------- ---------- ---------- ---------E BACU011274/1-695 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSTTRP00000010753/1-1501 -SHSASPLSM SSEGREKIWC GMSYDSTHVS GPTQHLSRKR MYIEDNLSNP ENSP00000350162/1-1530 -SHLASSLSK SSEGREKTWF DMPCDATHVS GPTQHLSRKR IYIEDNLSNS ENSBTAP00000004704/1-1516 KSHSASPLST SSEEREKTWY GMPSDSTHMS GCIQHLSRKR MYTEDSLNNS bmy_10628T0/1-1379 -SHSASPLSM SSEGREKIWC GMSDDSTHVS GPTQHLSRKR MYIEDNLSNP BACU011274/1-695 ---------- ---------- ---------S SPTQHLSRKR MYIEDNLSNP 1351 1400 ENSTTRP00000010753/1-1501 GEAELEE--E EDRANLLPKK VSKGEGADHH TWKVSESLSP LSTNDFCIPG ENSP00000350162/1-1530 NEVEMEEK-G ERRANLLPKK LCKIEDADHH IHKMSESVSS LSTNDFSIPW ENSBTAP00000004704/1-1516 GEV------E EERANLLPKK LCKSKDADHH TYKVSESISP LSANDFSIPL bmy_10628T0/1-1379 GEAELEEEEE EERANLLPKK LSKGEGADHH TCKVSESISP LSTNDFSIPG BACU011274/1-695 GEAELEEEEE EERANLLPKK LSKGEGADHH TCKVSESISP LS-NDFSIRG 1401 1450 ENSTTRP00000010753/1-1501 ENWETEISGI G-TM--CEEF NTEFRRKVHI RHKMMDYFTK QSWKTAQQH- ENSP00000350162/1-1530 ETWQNEFAGI EMTYETYERL NSEFKRRNNI RHKMLSYFTT QSWKTAQQHL ENSBTAP00000004704/1-1516 ENWETEISDV GMMM--CEQL NTEFQRKVNI RHKMMDYFTK QTWKTIQQHI bmy_10628T0/1-1379 ENWETEISGV G-TM--CEEL NTEFRRKVHI RHKMMDYFTK QSWKTAQQHV BACU011274/1-695 ENWETEISGV G-TM--CEEL NTEFRRKVHV CGEG------ ---RTLHLTL 1451 1500 ENSTTRP00000010753/1-1501 KTVDHQIEYS MYIHKKYRLK FMMRGRENLG LTDTQYIKDQ QRP-IGFWEK ENSP00000350162/1-1530 RTMNHQSQDS R-IKKLDKFQ FIIIEELENF EKDSQSLKDL EKEFVDFWEK ENSBTAP00000004704/1-1516 KAINQKIQEY R-IKKLDKFQ FIIIEELENF EKDSQYLKDL EKEFVDFREK bmy_10628T0/1-1379 KTMNHQIQE- --IKKLDKFQ FIIIEELENF EKDSQSLKDL EKEFVGFWEK BACU011274/1-695 CCEHGKQPED RGPVSLSQ-- ----PEAPNP ASD------- ----VGF--- 1501 1550 ENSTTRP00000010753/1-1501 VFQKFSAYHK SEQQRLHLLK ASLEKNVFYN TDYEETIFTS EMCLMKENMK ENSP00000350162/1-1530 IFQKFSAYQK SEQQRLHLLK TSLAKSVFCN TDSEETVFTS EMCLMKEDMK ENSBTAP00000004704/1-1516 VFQQFSAYQK REQQRLHLLK ASLDKNVFYS TDCEENIVTS QMCLMKENMK bmy_10628T0/1-1379 VFQKFSAYQK SEQQRLHLLK ASLEKNVFYN TDYEETIFTS EMCLMKENMK BACU011274/1-695 ILLEVGSLDL KEVESHCFLS ASY----VSK TDNED----- ----VEDDDK 1551 1600 ENSTTRP00000010753/1-1501 MLQDRLLKEM QEEQLLNVRR GLMSLFMAHE RN-NV-- ENSP00000350162/1-1530 VLQDRLLKDM LEEELLNVRR ELMSVFMSHE RNANV-- ENSBTAP00000004704/1-1516 MLQDRLLKEM QEEELHTVRR GLRSLFMAHE RN-NL-- bmy_10628T0/1-1379 MLQDRLLKEM QEEELLNVRR GLMSLFMAHE RN-NV-- BACU011274/1-695 DVDENVAKDD GKEDEED--- --------KD KN-DEDS