KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:39 2014 Check: 00 .. Name: ENSTTRP00000011429/1-298 Len: 299 Check: 4713 Weight: 1.00 Name: ENSP00000384967/1-236 Len: 299 Check: 8700 Weight: 1.00 Name: bmy_08124T0/1-219 Len: 299 Check: 872 Weight: 1.00 Name: ENSBTAP00000004727/1-239 Len: 299 Check: 2739 Weight: 1.00 Name: BACU012568/1-239 Len: 299 Check: 2615 Weight: 1.00 // 1 50 ENSTTRP00000011429/1-298 TMGIFLAYVG FVFFSVLYVQ QGLSSQXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000384967/1-236 MMGIFLVYVG FVFFSVLYVQ QGLSSQAKFT EFPRNVTATE GQNVEMSCAF bmy_08124T0/1-219 -MGIFLAYVG FVFFSVLYVQ QGLSSQAKFT EFPRNVTATE GQNVEMSCAF ENSBTAP00000004727/1-239 -MEIFLAYVG FVFFSVLYVQ QGLSSQAKFT EFPRNVTATE GQNVEMSCAF BACU012568/1-239 -MGIFLAYVG FVFFSVLYVQ QGLSSQAKFT EFPRNVTATE GQNVEMSCAF 51 100 ENSTTRP00000011429/1-298 XXXXSSVYLE IQWWFLRGP- DLDPGAEVAG AQXXXXXXXX XXXXXXXXXT ENSP00000384967/1-236 QSGSASVYLE IQWWFLRGPE DLDPGAEGAG AQVELLPDRD PDSDGTKIST bmy_08124T0/1-219 QSGSASVYLE IQWWFLRGPE DLDPGAEVAG AQAELLPYRD PDGDGTKIST ENSBTAP00000004727/1-239 QSGSASVYLE IQWWFLRGPE DLEPGADVAG AQAELLPDRD PDGDGTKIST BACU012568/1-239 QSGSASVYLE IQWWFLRGPE DLDTGAEVAG AQAELLPYRD PDGDGTKIST 101 150 ENSTTRP00000011429/1-298 VKVQGNDISH KLQISKVRKK DEGLYECRVT DANYGELQEH KAQAYLKVNA ENSP00000384967/1-236 VKVQGNDISH KLQISKVRKK DEGLYECRVT DANYGELQEH KAQAYLKVNA bmy_08124T0/1-219 VKVQGNDISH KLQISKVRKK DEGVYECRVT DANYGELQEH KAQAYLKVNA ENSBTAP00000004727/1-239 VKVQGNDISH KLQISKVRKK DEGLYECRVT DANYGELQEH KAQAYLKVNA BACU012568/1-239 VKVQGNDISH KLQISKVRKK DEGVYECRVT DANYGELQEH KAQAYLKVNA 151 200 ENSTTRP00000011429/1-298 NSHARRMQAF EASPMWLQDV KPRKNVSAAA PGSMHSSANQ RVLSTSSPQA ENSP00000384967/1-236 NSHARRMQAF EASPMWLQDM KPRKNVSAAI PSSIHGSANQ RTHSTSSPQV bmy_08124T0/1-219 NSHARRMQAF EASPMWLQDA KPRRNVSAAA PGSMHGSANQ QVLSTSSPQA ENSBTAP00000004727/1-239 NSHARRMQAF EASPMWLQDM KPRKNVSVAA PSSMHSSANQ RVPSTSSPQE BACU012568/1-239 NSHARRMQAF EASPMWLQDA KPRRNVSAAA PGSTHSSASQ RVLSTSSPQA 201 250 ENSTTRP00000011429/1-298 VAKIPKQSPQ SEHLLLTEAK HPLHSPPPSL PLFPPSTFPS VGPLPQPWPT ENSP00000384967/1-236 VAKIPKQSPQ S--------- ---------- ---------- ---------- bmy_08124T0/1-219 VAKIPKQSPQ S--------- ---------- ---------- ---------- ENSBTAP00000004727/1-239 VAKIPKQSPQ S--------- ---------- ---------- ---------- BACU012568/1-239 VAKIPKQSPQ S--------- ---------- ---------- ---------- 251 300 ENSTTRP00000011429/1-298 ANKTVLQPSP PPEGHSSALP PKSKSPVKST ERTAKLTLNS KHHSAPTVL ENSP00000384967/1-236 ---------- ---------- ---GARIATS HGLSVLLLVC GFVKGALL- bmy_08124T0/1-219 ---------- ---------- ---------- ----DLCIDN GPN------ ENSBTAP00000004727/1-239 ---------- ---------- AKSKSPVKST ERTAKLTLNS KHHSAPTVL BACU012568/1-239 ---------- ---------- AKSKSPVKST ERTAKLTLNS KHHSAPTVL