KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:24:40 2014 Check: 00 .. Name: ENSBTAP00000004728/1-568 Len: 574 Check: 8063 Weight: 1.00 Name: ENSTTRP00000002843/1-571 Len: 574 Check: 9790 Weight: 1.00 Name: bmy_21028T0/1-455 Len: 574 Check: 1643 Weight: 1.00 Name: BACU017265/1-564 Len: 574 Check: 8246 Weight: 1.00 // 1 50 ENSBTAP00000004728/1-568 MPGETEEPRP PERQDQGGGP AAA------E PQPQPPEAAA APPAGPPSSR ENSTTRP00000002843/1-571 MPGETEEPRP PEQQDQEGGE AAAAKAAPEE PQQQPPEAAA AAPGGTTSSR bmy_21028T0/1-455 ---------- ---------- ---------- ---------- ---------- BACU017265/1-564 MPGETEEPRP PEQQDQEGGE AAAAKAAPEE PQQQPPEAAA AAPGGTTSSR 51 100 ENSBTAP00000004728/1-568 VLRGGRDRGR AAAAAAAAAA AVSRRRKAEY PRRRRSSPSA RPADAPGQPA ENSTTRP00000002843/1-571 VLRGGRDRGR ---AAAAAAA AVSRRRKAEY PRRRRSSPSA RPPDAPGQQS bmy_21028T0/1-455 ---------- ---------- -------MKY KR-------- ---------- BACU017265/1-564 VLRGGRDRGR ---AAAAAAA AVSRRRKAEY PRRRRSSPSA RPPDAPGQQS 101 150 ENSBTAP00000004728/1-568 QAAKPPSPAQ GKRSPRVRCI EKVSTEKDPK EEKEEEESAL AQEAPSATAR ENSTTRP00000002843/1-571 QAAKPPSPAQ GKKSPRLLCT EKVSSDKDPK EEKEEEGSTV PQEVSVAATK bmy_21028T0/1-455 ---------- -----ALL-- -------NPK EEKEEEGSTV PQEVSVAATK BACU017265/1-564 QAAKPPSPAQ GKKSPRLLCI EKVSSDKDPK EEKEEEGSTV PQEVSVAATK 151 200 ENSBTAP00000004728/1-568 PSRGWRGSSR TSVSRHRDAE NTRSSRSKTG SLQLICKSEP NTDQLDYDAA ENSTTRP00000002843/1-571 PSRGWRSSSR TSASRHRDTE NTRSSRSKTG SLQLICKSEP NTDQLDYDVA bmy_21028T0/1-455 PSRGWRSSSR TSASRHRDTE NTRSSRSKTG SLQLICKSEP NTDQLDYDVA BACU017265/1-564 PSRGWRSSSR TSASRHRDTE NTRSSRSKTG SLQLICKSEP NTDQLDYGTV 201 250 ENSBTAP00000004728/1-568 EEHQSPGGIS SDEEEEEEEE MLISEEEIPF KDDPRDETYK PHLERETPKP ENSTTRP00000002843/1-571 EEHQSPGGIS SDEEEEEEDE MLISEEEIPF KDDPRDETYK PHLERETPKP bmy_21028T0/1-455 EEHQSPGGIS SDEEEEEEEE MLISEEEIPF KDDPRDETYK PHLERETPKP BACU017265/1-564 N-------ID SDEEEEEEEE MLISEEEIPF KDDPRDETYK PHLERETPKP 251 300 ENSBTAP00000004728/1-568 RRKSGKVKEE KEKKEIKVEV EVEVKEEENE IREDEEPPRK RGRRRKDDKS ENSTTRP00000002843/1-571 RRKSGKVKEE KEKKEIKVEV EVEVKEEENE IREDEEPPRK RGRRRKDDKS bmy_21028T0/1-455 RRKSGKVKEE KEKKEIKVEV EVEVKEEENE IREDEEPPRK RGRRRKDDKS BACU017265/1-564 RRKSGKVKEE KEKKEIKVEV EVEVKEEENE IREDEEPPRK RGRRRKDDKS 301 350 ENSBTAP00000004728/1-568 PRLPKRRKKP PIQYVRCEME GCGTVLAHPR YLQHHIKYQH LLKKKYVCPH ENSTTRP00000002843/1-571 PRLPKRXXXX XXXXXXXXXX XXXXXXXXXX XXXHHIKYQH LLKKKYVCPH bmy_21028T0/1-455 PRLPKRRKKP PIQYVRCEME GCGTVLAHPR YLQHHIKYQH LLKKKYVCPH BACU017265/1-564 PRLPKRRKKP PIQYVRCEME GCGTVLAHPR YLQHHIKYQH LLKKKYVCPH 351 400 ENSBTAP00000004728/1-568 PSCGRLFRLQ KQLLRHANHW TDQRDYICEY CARAFKSSHN LAVHRMIHTG ENSTTRP00000002843/1-571 PSCGRLFRLQ KQLLRHAKHH TDQRDYICEY CARAFKSSHN LAVHRMIHTG bmy_21028T0/1-455 PSCGRLFRLQ KQLLRHAKHH TDQRDYICEY CARAFKSSHN LAVHRMIHTG BACU017265/1-564 PSCGRLFRLQ KQLLRHAKHH TDQRDYICEY CARAFKSSHN LAVHRMIHTG 401 450 ENSBTAP00000004728/1-568 EKPLQCEICG FTCRQKASLN WHMKKHDADS FYQFSCNICG KKFEKKDSVV ENSTTRP00000002843/1-571 EKPLQCEICG FTCRQKASLN WHMKKHDADS FYQFSCNICG KKFEKKDSVV bmy_21028T0/1-455 EKPLQCEICG FTCRQKASLN WHMKKHDADS FYQFSCNICG KKFEKKDSVV BACU017265/1-564 EKPLQCEICG FTCRQKASLN WHMKKHDADS FYQFSCNICG KKFEKKDSVV 451 500 ENSBTAP00000004728/1-568 AHKAKSHPEV LIAEALAANA GALITSTDIL GTSPEALSPP AGGQGLPLLP ENSTTRP00000002843/1-571 AHKAKSHPEV LIAEALAANA GALITSTDIL GTNPESLTQP ADGQGLPLLP bmy_21028T0/1-455 AHKAKSHPEV LIAEALAANA GALITSXDIL GTNPESLTQP ADGQGLPLLP BACU017265/1-564 AHKAKSHPEV LIAEALAANA GALITSTDIL GTNPESLTQP ADGQGLPLLP 501 550 ENSBTAP00000004728/1-568 EPLGNPAPGE CLLLEAEGVS KSFCGGAERV SLVTDGKLFV GGGGGTGADG ENSTTRP00000002843/1-571 EPLGNSTSGE CLLLEAEGMS KSYCSGTERV SLMADGKIFV GSGSSGGTEG bmy_21028T0/1-455 EPLGNSTSGE CLLLEAEGMS KSYCSGXERV SLMADGKIFV GSGSSGGTEG BACU017265/1-564 EPLGNSTSGE CLLLEAEGMS KSYCSGTERV SLMADGKIFV GSGSSGGTEG 551 600 ENSBTAP00000004728/1-568 LVMNSDILGA TAEVLIEDSD SAGP ENSTTRP00000002843/1-571 LVMNSDILGA TTEVLIEDSD STGH bmy_21028T0/1-455 LVMNSDILGA TTEVLIEDSD STGP BACU017265/1-564 LVMNSDILGA TTEVLIEDSD STGP