KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:24:40 2014 Check: 00 .. Name: BACU006725/1-244 Len: 332 Check: 303 Weight: 1.00 Name: ENSP00000446916/1-241 Len: 332 Check: 2581 Weight: 1.00 Name: bmy_21249T0/1-326 Len: 332 Check: 4809 Weight: 1.00 Name: ENSBTAP00000004732/1-242 Len: 332 Check: 5419 Weight: 1.00 // 1 50 BACU006725/1-244 ---------- ---------- ---------- ----MKW--- -------YLI ENSP00000446916/1-241 ---------- ---------- ---------- ----MKF--- -------ILL bmy_21249T0/1-326 MIKLSKAAAL NNQVGTIAIA MEPLSFNDSC FIPTWTWSKY KNLSDPDMLT ENSBTAP00000004732/1-242 ---------- ---------- ---------- ----MNL--- -------ILL 51 100 BACU006725/1-244 F--------- ---------- ---------- ---------- -ALMSAAGVI ENSP00000446916/1-241 W--------- ---------- ---------- ---------- -ALLNLTVAL bmy_21249T0/1-326 WINQYTLPYD ECQNMQDERM AINIMCVGQP LKTLSENKHF RSMFLSPVAL ENSBTAP00000004732/1-242 W--------- ---------- ---------- ---------- -ALLNLPVAL 101 150 BACU006725/1-244 PAQDSNTEKM YVAEDFTIPY MVYLQSFPEP CVGSLIHPEW VLTAAHCPLP ENSP00000446916/1-241 AFNPDYT--- ---VSSTPPY LVYLKSDYLP CAGVLIHPLW VITAAHCNLP bmy_21249T0/1-326 TFDPDYK--- ---DVITPPY MIYLKSDYLP CVGGLIHPLW VITAAHCNLL ENSBTAP00000004732/1-242 TFDPNYK--- ---DDITPPY LIYLKSDYLP CVGVLIHPLW VITAANCNLP 151 200 BACU006725/1-244 -VKIRLGVYQ PNIKNKEE-- QVRNYSMTVP YPEFNAGSLN NDLVMIKLSK ENSP00000446916/1-241 KLRVILGVTI PADSN-EKHL QVIGYEKMIH HPHFSVTSID HDIMLIKLKT bmy_21249T0/1-326 KLQLILGVTK PSNLKEEKHI QVVGYEKMIH HPEFSITSIE HNFMLIKLQT ENSBTAP00000004732/1-242 RLQLILGVTK PSNIDEEKYV QVVGYEKMIH HPQFSITSIE HNLMLIKLQT 201 250 BACU006725/1-244 PAALNNQVGT IAIAMEPLSF NDSCFIPTWT WSKYKNLSDP DMLTWINQYT ENSP00000446916/1-241 EAELNDYVKL ANLPYQTISE NTMCSVSTWS YNVCDIYKEP DSLQTVNISV bmy_21249T0/1-326 HIELNDYVKL ASLPKEPATE DTMCTVSTWT YNVCDLYKDP DSLQNVNISV ENSBTAP00000004732/1-242 HIELNNYVKI VSLPKEPAAE DDTCIVSTWA YNLCDHYKDP DSLQNVNISV 251 300 BACU006725/1-244 LPYDECQNM- QDERMAINIM CVGQPLKTLS ENKEVSAAPA ICGGRLHGIL ENSP00000446916/1-241 ISKPQCRDAY KTYNITENML CVGIVPGRRQ PCKEVSAAPA ICNGMLQGIL bmy_21249T0/1-326 ISETEWREAY KTYNIRDSMM CVGIVPGRRL PCKEVTAAPA MCDGVLQGIL ENSBTAP00000004732/1-242 ISKVECLKAY KYMHIRDSMM CVGIVPGRRQ PCKEVTAAPA VCNGILQGIL 301 350 BACU006725/1-244 TWAKGSVTLG SEGFFTEVNP YARWLMSVIE SH ENSP00000446916/1-241 SFADGCVLRA DVGIYAKIFY YIPWIENVIQ NN bmy_21249T0/1-326 TFADGCVLRA DVGIYTRIIN YIPWIENTIR NN ENSBTAP00000004732/1-242 TFADGCVLRA DVGIYTRIIN YIPWIENTIQ NN