KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:43 2014 Check: 00 .. Name: ENSTTRP00000007063/1-549 Len: 1071 Check: 4862 Weight: 1.00 Name: ENSP00000296358/1-612 Len: 1071 Check: 3229 Weight: 1.00 Name: bmy_20496T0/1-478 Len: 1071 Check: 1021 Weight: 1.00 Name: ENSBTAP00000004759/1-475 Len: 1071 Check: 4794 Weight: 1.00 Name: BACU014358/1-1063 Len: 1071 Check: 8896 Weight: 1.00 // 1 50 ENSTTRP00000007063/1-549 -MPEGQEAPA SPQAFRSSPD RGSSGPAACP QPQLPAPGPP ESPAPRRGAI ENSP00000296358/1-612 -MLEGLGSPA SPRAAASASV AGSSGPAACS PPSSSAPRSP ESPAPRRGGV bmy_20496T0/1-478 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004759/1-475 ---------- ---------- ---------- ---------- ---------- BACU014358/1-1063 MDALQARERL RRRYLFPRDV EVQLDREGYA GPETSTPVEK KEKPLPRLNI 51 100 ENSTTRP00000007063/1-549 RASFPQKLAE ALSSQYGLNV FVAGLLFLLA WAVHASGVGK SDLLCFLTAL ENSP00000296358/1-612 RASVPQKLAE MLSSQYGLIV FVAGLLLLLA WAVHAAGVSK SDLLCFLTAL bmy_20496T0/1-478 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004759/1-475 ---------- ---------- ---------- ---------- ---------- BACU014358/1-1063 HSGFWILASI AVTYYVDFFQ AVKENFHTNS WFLFGGA--- --LLLVSLSI 101 150 ENSTTRP00000007063/1-549 MLLQLLWMLW YVGRSSAHRR ---LKDTHAG ---------- -----ARWLR ENSP00000296358/1-612 MLLQLLWMLW YVGRSSAHRR LFRLKDTHAG ---------- -----AGWLR bmy_20496T0/1-478 MLLQLLWMLW YVGRSSAHRR PSRLKDTHAG ---------- -----ARWLR ENSBTAP00000004759/1-475 ---------- ---------- ---------- ---------- ---------- BACU014358/1-1063 AFYCIVYLEW YCGIEDYDIK YPTLIPITTA TFIVAGIWKT KHWDPSQWVN 151 200 ENSTTRP00000007063/1-549 G--------- ----SITLFA VITVILGCLK IGYFVGFSEC LSATEGVFPV ENSP00000296358/1-612 G--------- ----SITLFA VITVILGCLK IGYFIGFSEC LSATEGVFPV bmy_20496T0/1-478 G--------- ----SITLFA VITIILGCLK IGYFAGFSEC LSXTEGVFPV ENSBTAP00000004759/1-475 G--------- ----SITLFA VITIILGCLK IGYFIGFSGC LSATEGVFPV BACU014358/1-1063 GGAISQDWGD KRRSSITLFA VITIILGCLK IGYFVGFSEC LSATEGVFPV 201 250 ENSTTRP00000007063/1-549 THAVHTLLQV YFLWGHAKDI IQSFKTLEXX XXXXXXXXXX XXXXXXXXXX ENSP00000296358/1-612 THSVHTLLQV YFLWGHAKDI IQSFKTLERF GVIHSVFTNL LLWANGVLNE bmy_20496T0/1-478 THAVHTLLQV YFLWGHAKDI IQSFKTLERF GVIHSVFTNL LLWVNSVLNE ENSBTAP00000004759/1-475 THAVHTLLQV YFLWGHSKDI IQSFKTLERF GVIHSVFTNL LLWANSVLNE BACU014358/1-1063 THAVHTLLQV YFLWGHAKDI IQSFKTLERF GVIHSVFTNL LLWANSVLNE 251 300 ENSTTRP00000007063/1-549 XXXXXXXXXX XXXXXXXXXX XXXLDDHTPP CNCTPPTLCS AISHGIYYLY ENSP00000296358/1-612 SKHQLNEHKE RLITLGFGNI TTVLDDHTPQ CNCTPPTLCT AISHGIYYLY bmy_20496T0/1-478 SKHQLNEHKE RLITLGFGNI TIVLDDHTPP CNCTPPTLCS AISHGIYYLY ENSBTAP00000004759/1-475 SKHQLNEHKE RLITLGFGNI TIVLDDHTPP CNCTPPTLCL AISHGMYYLY BACU014358/1-1063 SKHQLNEHKE RLITLGFGNI TIVLDDHTPL CNCTPPTLCS AISHGIYYLY 301 350 ENSTTRP00000007063/1-549 PFNIEYQILA STMLYVLWKN IGRKVDSHQR QKMQFRSHGV MLGSVLGLTA ENSP00000296358/1-612 PFNIEYQILA STMLYVLWKN IGRKVDSHQH QKMQFKSDGV MVGAVLGLTV bmy_20496T0/1-478 PFNIEYQILA STMLYVLWKN IGRKVDSHQH QKMQFRSHGV MLGSVLGLTA ENSBTAP00000004759/1-475 PFNIEYQILA STMLYVLWKN IGRKVDSHQH QKMQFRSHGV LLGSVLGLTV BACU014358/1-1063 PFNIEYQILA STMLYVLWKN IGRKVDSHQH QKMQFRSHGV MLGSVLGLTA 351 400 ENSTTRP00000007063/1-549 LAATIGVVVV YLIWIGRSKT GSESALIMFY LYAIILLVLM GAAGLAGIRI ENSP00000296358/1-612 LAATIAVVVV YLIHIGRSKT KSESALIMFY LYAITLLMLM GAAGLAGIRI bmy_20496T0/1-478 LAATIGVVVV YLIWIGRSKT RSESALIMFY LYAIILLMLM GAAGLAGIRI ENSBTAP00000004759/1-475 LATTIGVVVV YLIQIGRSKT KSEAALIMFY LYASILLMLM GAAGLVGIRI BACU014358/1-1063 LAATIGVVVV YLIWIGRSKT RSESALIMFY LYAIILLMLM GAAGLAGIRI 401 450 ENSTTRP00000007063/1-549 YRLDEQSLDE SKNPARKLDA DLLVGTASGS WLISWGSILA ILCAESCPLY ENSP00000296358/1-612 YRIDEKSLDE SKNPARKLDS DLLVGTASGS WLISWGSILA ILCAEGHPRY bmy_20496T0/1-478 YRLDEQSLDE SKNPARKLDA DLLVGTASGS WLISWGSILA ILCAESRPPY ENSBTAP00000004759/1-475 YRLDEQSLDE SKNPARKLDA DLLVGTASGS WFISWGSILA ILCAESRPPY BACU014358/1-1063 YRLDEQSLDE SKNPARKLDA DLLVGTASGS WLISWGSILA ILCAESRPPY 451 500 ENSTTRP00000007063/1-549 TWYNLPYSIL VVVEKYIQNL FIIESIHREP EKLSKDIRTL QVVTVCNGNA ENSP00000296358/1-612 TWYNLPYSIL AIVEKYIQNL FIFESIHREP EKLSEDIQTL RVVTVCNGNT bmy_20496T0/1-478 TWYNLPYSIL VVVEKYIQNL FIIESIHREP EKLSKDIRTL QVVTVCNGNA ENSBTAP00000004759/1-475 TWYNLPYSIL AVVEKYIQNL FIIESIHREP GKLSDDIRTL RVVTVYNGNA BACU014358/1-1063 TWYNLPYSIL VVVEKYIQNL FIIESIHREP EKLSKDIRTL QVVTVCNGNA 501 550 ENSTTRP00000007063/1-549 TSLP-SCFES RPAAGDVAPQ DSEMSHTANG NVCLREVDSK EE---EEKSW ENSP00000296358/1-612 MPLASSCPKS GGVARDVAPQ GKDMPPAANG NVCMRESHDK EEEKQEESSW bmy_20496T0/1-478 TSLPSSCFES RPAAGDVAPQ GSEMPHAANG NMCLREVGSK EE---EEKSW ENSBTAP00000004759/1-475 MSLPSSCLKN GPMAGDMAPQ ALEMPPAANG NTCLREVGGR EK---EDKSW BACU014358/1-1063 TSLPSSCFES RPAAGDVAPQ GSEMPHAANG NMCLREVGSK EE---EEKSW 551 600 ENSTTRP00000007063/1-549 EGALGPACHA HFLQGNAQRK VLRNIAAFLF LCNIS----- ---------- ENSP00000296358/1-612 GGSPSPVRLP RFLQGNAKRK VLRNIAAFLF LCNISLWIPP AFGCRPEYDN bmy_20496T0/1-478 EGALGPACHP HFLQGNAQRR VLRNIAAFLF LCNISVI--- ---CK----- ENSBTAP00000004759/1-475 ERAQGSACHS CFLQDNAQRR VLRNIAAFLF LCNISLWIPP AFGCRPEYDN BACU014358/1-1063 EGALGPACHP HFLQGNAQRR VLRNIAAFLF LCNISLWIPP AFGCRPEYDN 601 650 ENSTTRP00000007063/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000296358/1-612 GLEEIVFGFE PWIIVVNLAM PFSIFYRMHA AASLFEVYCK I--------- bmy_20496T0/1-478 -----LFLYL K-ILINLFSL PFS------- --------NK E--------- ENSBTAP00000004759/1-475 GLEEIVFGFE PWIIVVNLAM PFSIFYRMHA AASLFEVYCK I--------- BACU014358/1-1063 GLEEIVFGFE PWIIVVNLAM PFSIFYRMHA AASLFEVYSQ VVTAGLLTLL 651 700 ENSTTRP00000007063/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000296358/1-612 ---------- ---------- ---------- ---------- ---------- bmy_20496T0/1-478 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004759/1-475 ---------- ---------- ---------- ---------- ---------- BACU014358/1-1063 IVWSLLGNVL VCASIVRSRH LRAKMTNVFT VSLAVSDLFV ALLVMPWKAV 701 750 ENSTTRP00000007063/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000296358/1-612 ---------- ---------- ---------- ---------- ---------- bmy_20496T0/1-478 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004759/1-475 ---------- ---------- ---------- ---------- ---------- BACU014358/1-1063 AEVAGYWPFG AFCDIWVAFD ITCSTASILN LCIISVDRYW ALSRPFCYEC 751 800 ENSTTRP00000007063/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000296358/1-612 ---------- ---------- ---------- ---------- ---------- bmy_20496T0/1-478 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004759/1-475 ---------- ---------- ---------- ---------- ---------- BACU014358/1-1063 KMTQRVALVM VGLAWTLSIL ISFIQVQLHW HTDKMGSWGG VDPPSNLVNG 801 850 ENSTTRP00000007063/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000296358/1-612 ---------- ---------- ---------- ---------- ---------- bmy_20496T0/1-478 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004759/1-475 ---------- ---------- ---------- ---------- ---------- BACU014358/1-1063 APWEEAGEPD LRAENCDSSL NRTYAVSSSL ISFYIPVAIM IATYTRIYRI 851 900 ENSTTRP00000007063/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000296358/1-612 ---------- ---------- ---------- ---------- ---------- bmy_20496T0/1-478 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004759/1-475 ---------- ---------- ---------- ---------- ---------- BACU014358/1-1063 AQVQIRRISS LERAAEHAQS CRSLEACAPD TGLRASIKKE TKVLKTLSVI 901 950 ENSTTRP00000007063/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000296358/1-612 ---------- ---------- ---------- ---------- ---------- bmy_20496T0/1-478 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004759/1-475 ---------- ---------- ---------- ---------- ---------- BACU014358/1-1063 IRVFVCRWLP FFILNCMVPF FSGHPEGFPC VSETTFEVFI WFGWANSSLN 951 1000 ENSTTRP00000007063/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000296358/1-612 ---------- ---------- ---------- ---------- ---------- bmy_20496T0/1-478 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004759/1-475 ---------- ---------- ---------- ---------- ---------- BACU014358/1-1063 PIIYTFNADF WKVFAQLLGC SHLCSRTQVE TVNISNELIS YNQDTAFHED 1001 1050 ENSTTRP00000007063/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000296358/1-612 ---------- ---------- ---------- ---------- ---------- bmy_20496T0/1-478 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004759/1-475 ---------- ---------- ---------- ---------- ---------- BACU014358/1-1063 IAAAYVHMIP NVVTPGDAEV DPEEEESPFS RTSQISQTSL DGDPAAGSVE 1051 1100 ENSTTRP00000007063/1-549 ---------- ---------- - ENSP00000296358/1-612 ---------- ---------- - bmy_20496T0/1-478 ---------- ---------- - ENSBTAP00000004759/1-475 ---------- ---------- - BACU014358/1-1063 LDYGGEISLG KITPFTPNGF H