KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:46 2014 Check: 00 .. Name: ENSP00000367965/1-549 Len: 571 Check: 3687 Weight: 1.00 Name: ENSBTAP00000004785/1-565 Len: 571 Check: 7586 Weight: 1.00 Name: ENSTTRP00000013959/1-552 Len: 571 Check: 7925 Weight: 1.00 Name: bmy_17661T0/1-569 Len: 571 Check: 2353 Weight: 1.00 Name: BACU013070/1-398 Len: 571 Check: 2357 Weight: 1.00 // 1 50 ENSP00000367965/1-549 --MALAAAAA AAAAGVSQAA VLGFLQEHGG KVRNSELLSR FKPLLDAGDP ENSBTAP00000004785/1-565 VTMALAAAAA AAAAGVSQAA VLGFLQENGG KVRNSELLSR FKPLLEAGDP ENSTTRP00000013959/1-552 --MALAAAAA AAAAGVSQAA VLGFLQENGG KVRDSELRSR FKPLLDAGDP bmy_17661T0/1-569 --MALAAAAA AAAAGVSQAA VLGFLQENGG KVRNSELLSR FKPLLDAGDP BACU013070/1-398 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000367965/1-549 RGRAARRDRF KQFVNNVAVV KELDGVKFVV LRKKPRP--- PEPEPAPFGP ENSBTAP00000004785/1-565 RGRAARRDRF KQFVNNVAVV KELDGVKFVV LKKKSRSHDG PEPPACCFQS ENSTTRP00000013959/1-552 RGRAARRDRF KQFVNDVAVV KELDGVKFVV LRKKPRPREG PESLPSCFLS bmy_17661T0/1-569 RGRAARRDRF KQFVNDVAVV KELDGVKFVV LRKKPRPREG PEPLPSCFPS BACU013070/1-398 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000367965/1-549 PGAAAQPSKP TSTVLPRSAS APGAPPLVRV PRPVEPPGDL GLPTEPQDTP ENSBTAP00000004785/1-565 APEAPAPPSK VTSVSQEETA ASGAPSASWA PRAAEPAEDP APPSEQQDTA ENSTTRP00000013959/1-552 TPVASAPPSK ITSVSQGETA ASGAPSLASA QRAVEPPEDP APPSEPQDTP bmy_17661T0/1-569 TPESSAPPSK ITSVSQGETA ASGAPSLASA QRAVEPPEDP APPSEPQDTP BACU013070/1-398 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000367965/1-549 GGPASEPAQP PGE------- ---RSADPPL PALELAQATE RPSADAAPPP ENSBTAP00000004785/1-565 GAPASETTQ- --GLLLDPAW QSGVPSDPQI PAFELAQPSE GLSEDVAPPS ENSTTRP00000013959/1-552 GAPASEPTQL TKE------- ---LPSEPQI TAFELAQPSE GLSADVAPPS bmy_17661T0/1-569 GAPASEPTQX TKGLLLVPAR QSGMPSDPQI TAFELAQPSE GLSADVAPPS BACU013070/1-398 ---------- ---------- ---MPSDPHI TAFELAQPSE GLSADVAPPS 201 250 ENSP00000367965/1-549 RAPSEAASPC SDPPDAEPGP GAAKGPP--- ----QQKPCM LPVRCVPAPA ENSBTAP00000004785/1-565 TAPSEAPSPH VEPPDPEAAP ---RGPPPPT PRPPPQKPCM LPVRCVPGPS ENSTTRP00000013959/1-552 MAPSEAALPH AEPPDPEPAP GLTKGPP--- ----PQKPCM LPVRCVPGPA bmy_17661T0/1-569 MAPSEAALPH AEPPDPEPAP GLSKGPPPPP PRALPQKPCM LPVRCVPGSA BACU013070/1-398 MAPSEAALPH AEPPDLEPAP GLSNGPPPPP PRALPQKPCM QPVRCVPGPA 251 300 ENSP00000367965/1-549 TLRLRAEEPG LRRQLSEEPS PRSSPLLLRR LSVEESGLGL GLGPGRSPHL ENSBTAP00000004785/1-565 ALRIRAEEQG LRRQLSEEPS PRSSPMLLRR LSVEESGLGL GLGSGRSPHL ENSTTRP00000013959/1-552 ALRIRAEEQG LRRQLSEEPS PRSSPLLLRR LSVEESGLGL SLGPGRSPHL bmy_17661T0/1-569 ALRIRAEEQG LRRQLSEEPS PRSSPLLLRR LSVEESGLGL SLGPGRSPHL BACU013070/1-398 ALRIRAEEQG LRRQLSEEPS PRSSPLLLRR LSVEESGLGL SLGPGRSPHL 301 350 ENSP00000367965/1-549 RRLSRAGPRL LSPDAEELPA APPPSAVPLE PSEHEWLVRT AGGRWTHQLH ENSBTAP00000004785/1-565 RRLSRAGPRL LSPDTEEAPA APPPSAVPLE PAEHEWLVRA AGGRWTHQLH ENSTTRP00000013959/1-552 RRLSRAGPRL LSPDTEEVPG APPPSAVPLE PAEHNWLVRA AGXXXXXXXX bmy_17661T0/1-569 RRLSRAGPRL LSPDTEEVPA APPPSAVPLE PAEHEWLVRA AGGRWTHQLH BACU013070/1-398 RRLSRAGPRL LSPDTEEVPA APPPSAVPLE PAEHEWLVRA AGGRWTHQLH 351 400 ENSP00000367965/1-549 GLLLRDRGLA AKRDFMSGFT ALHWAAKSGD GEMALQLVEV ARRSGAPVDV ENSBTAP00000004785/1-565 GLLLRDLGLA AKRDFMSGFT ALHWAAKSGD LEMVQQLVEV ARRGGARVDV ENSTTRP00000013959/1-552 XXXXXXXXXX XXRDFMSGFT ALHWAAKSGD LEMVQQLVEI ARRGGARVDV bmy_17661T0/1-569 GLLLRDLGLA AKRDFMSGFT ALHWAAKSGD LEMVQQLVEI ARRGGARVDV BACU013070/1-398 GLLLRDLGLA AKRDFMSGFT ALHWAAKSGD LEMVQQLVEI ARRGGARVDV 401 450 ENSP00000367965/1-549 NARSHGGYTP LHLAALHGHE DAAVLLVVRL GAQVHVRDHS GRRAYQYLRP ENSBTAP00000004785/1-565 NARSHGGYTP LHLAALHGHE DAAVLLVVRL GAQVHVRDHS GRRAYQYLQS ENSTTRP00000013959/1-552 NARSHGGYTP LHLAALHGHE DAAVLLVVRL GAQVQVRDHS GRRAYQYLPS bmy_17661T0/1-569 NARSHGGYTP LHLAALHGHE DAAVLLVVRL GAQVHVRDHS GRRAYQYLPS BACU013070/1-398 NARSHGGYTP LHLAALHGHE DAAVLLVVRL GAQVHVRDHS GRRAYQYLPS 451 500 ENSP00000367965/1-549 GSSYALRRLL GDPGLRGTTE PDATGGGSGS LAARRPVQVA ATILSSTTSA ENSBTAP00000004785/1-565 GASYALRRLL GDPGLRGSTE PDGAAGGSGS FAARRPVQVA ATILSSTTSA ENSTTRP00000013959/1-552 GASYALRRLL GDPILRSSTE PDATAGGSGS FAARRPVQVA ATILSSTTSA bmy_17661T0/1-569 GASYALRRLL GDPGLRSSTE PDATGGGSGS FAARRPVQVA ATILSSTTSA BACU013070/1-398 GASYALRRLL GDPGLRSSTE PDATGGGSGS SAARRPVQVA ATILSSTTSA 501 550 ENSP00000367965/1-549 FLGVLADDLM LQDLARGLKK SSSFSKFLSA SPMAPRKKTK IRGGLPAFSE ENSBTAP00000004785/1-565 FLGVLADDLM LQDLARGMRK SSSLNKFLGA SPMAPRKKTK IRGSLPAFSE ENSTTRP00000013959/1-552 FLGVLADDLM LQDLARGMRK SGSLSKFLGA SPTAPRKKTK TRSSLQVFSE bmy_17661T0/1-569 FLGVLADDLM LQDLARGMRK SGSLSKFLGA SPMAPRKKTK TRSSLQVFSE BACU013070/1-398 FLGVLADDLM LQDLARGMRK SGSLSKFLGA SPMAPRKKAK TRSSLQVFSE 551 600 ENSP00000367965/1-549 ISRRPTPGPL AGLVPSFPPT T ENSBTAP00000004785/1-565 ISRRPTPGAL AGLVPSLPPA T ENSTTRP00000013959/1-552 ISRRPIPGPL AGLAPSLPPA T bmy_17661T0/1-569 ISRRPTPGPL AGLVPSLPPA T BACU013070/1-398 ISRRPTPGPL AGLVPSLPPA T