KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:48 2014 Check: 00 .. Name: bmy_02216T0/1-573 Len: 767 Check: 4433 Weight: 1.00 Name: ENSBTAP00000004805/1-525 Len: 767 Check: 2039 Weight: 1.00 Name: ENSP00000335677/1-660 Len: 767 Check: 9546 Weight: 1.00 Name: BACU011652/1-491 Len: 767 Check: 7329 Weight: 1.00 Name: ENSTTRP00000012475/1-642 Len: 767 Check: 6329 Weight: 1.00 // 1 50 bmy_02216T0/1-573 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004805/1-525 ---------- ---------- ---------- ---------- ---------- ENSP00000335677/1-660 MAAAAAALSG AGTPPAGGGA GGGGAGGGGS PPGGWAVARL EGREFEYLMK BACU011652/1-491 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012475/1-642 -MAAAAALPG AGVPPASGGA GGGGGAGGGS PPGGWAEARL EGREFEYLMK 51 100 bmy_02216T0/1-573 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004805/1-525 ---------- ---------- ---------- ---------- ---------- ENSP00000335677/1-660 KRSVTIGRNS SQGSVDVSMG HSSFISRRHL EIFTPPGGGG HGGAAPELPP BACU011652/1-491 ---------- ---------- MSSEVSR--- ---------- ---------- ENSTTRP00000012475/1-642 KRSVTIGRNS SQGSVDVSMG HSSFISRRHL EIFTPPGGGG HGGAAPE-PS 101 150 bmy_02216T0/1-573 ---------- ---------- ---------- ---------- CTFRFPSTNI ENSBTAP00000004805/1-525 ---------- ---------- ---------- ---------- CTFRFPSTNI ENSP00000335677/1-660 AQPRPDAGGD FYLRCLGKNG VFVDGVFQRR GAPPLQLPRV CTFRFPSTNI BACU011652/1-491 ---------- ---------- ---------- ---------- CTFRFPSTNI ENSTTRP00000012475/1-642 AQPGPDAGGD FYLRCLGKNG VFVDGVFQRR GAPPLQLPRV CTFRFPSTNI 151 200 bmy_02216T0/1-573 KITFTALSSE KREKQEAPES PVKPVQAHIS PLTINIPDTM AHLISPLPSP ENSBTAP00000004805/1-525 KITFTALSSE KREKQEAPES PVKPVQAHIS PLTINIPDTM AHLISPLPSP ENSP00000335677/1-660 KITFTALSSE KREKQEASES PVKAVQPHIS PLTINIPDTM AHLISPLPSP BACU011652/1-491 KITFTALSSE KREKQEAPES PVKPVQAHIS PLTINIPDTM AHLISPLPSP ENSTTRP00000012475/1-642 KITFTALSSE KREKQEAPES PVKPVQAHIS PLTINIPDTM AHLISPLPSP 201 250 bmy_02216T0/1-573 TGTIRYTAAS MVDGVTVGSG CACAKVDMTL SKFQSLPLAV GHSEAIVRHS ENSBTAP00000004805/1-525 TGTI------ ---------- ---------- ---------- ---------- ENSP00000335677/1-660 TGTI------ ---------- ---------- ---------- ---------- BACU011652/1-491 TGTI------ ---------- ---------- ---------- ---------- ENSTTRP00000012475/1-642 TGTI------ ---------- ---------- ---------- ---------- 251 300 bmy_02216T0/1-573 SGQQHTATAA NSCPSSPRGA GSSGYKMGRV IPSDLNLMAD NSQPENEKEA ENSBTAP00000004805/1-525 -------SAA NSCPSSPRGA GSSGYKMGRV IPSDLNLMAD SSQPENEKEA ENSP00000335677/1-660 -------SAA NSCPSSPRGA GSSGYKVGRV MPSDLNLMAD NSQPENEKEA BACU011652/1-491 -------SAA NSCPSSPRGA GSSGYKMGRV IPSDLNLMAD NSQPENEKEA ENSTTRP00000012475/1-642 -------SAA NSCPSSPRGA GSSGYKMGRV IPSDLNLMAD NSQPENEKEA 301 350 bmy_02216T0/1-573 SGGDSPKDDS KPPYSYAQLI VQAITMAPDK QLTLNGIYTH ITKNYPYYR- ENSBTAP00000004805/1-525 SGGDSPKENF PPSYRYLCPF LLMLQWVPWN ELSCHTLGYH IFKPLHYYKE ENSP00000335677/1-660 SGGDSPKDDS KPPYSYAQLI VQAITMAPDK QLTLNGIYTH ITKNYPYYR- BACU011652/1-491 SGGDSPKDDS KPPYSYAQLI VQAITMAPDK QLTLNGIYTH ITKHYPYYR- ENSTTRP00000012475/1-642 SGGDSPKDDS KPPYSYAQLI VQAITMAPDK QLTLNGIYTH ITKNYPYYR- 351 400 bmy_02216T0/1-573 -TADKGWQNS IRHNLSLNRY FIKVPRSQEE PGKGSFWRID PASESKLIEQ ENSBTAP00000004805/1-525 SASDVGWRNS IRHNLSLNRY FIKVPRSQEE PGKGSFWRID PASESKLIEQ ENSP00000335677/1-660 -TADKGWQNS IRHNLSLNRY FIKVPRSQEE PGKGSFWRID PASESKLIEQ BACU011652/1-491 -TADKGW--- ---------- ---------- ---------- ---------- ENSTTRP00000012475/1-642 -TADKGWQNS IRHNLSLNRY FIKVPRSQEE PGKGS----- ---------- 401 450 bmy_02216T0/1-573 AFRKRRPRGV PCFRTPLGPL SS---RSAPA SPNHAGVLSA HSSGAQTPES ENSBTAP00000004805/1-525 AFRKRRPRGV PCFRTPLGPL SSRSYRSAPA SPNHAGVLSA HSSGAQTPES ENSP00000335677/1-660 AFRKRRPRGV PCFRTPLGPL SS---RSAPA SPNHAGVLSA HSSGAQTPES BACU011652/1-491 ---------- ---------- ---------- ---------- -----QTPES ENSTTRP00000012475/1-642 -FRKRRPRGV PCFRTPLGPL SS---RSAPA SPNHAGVLSA HSSGAQTPES 451 500 bmy_02216T0/1-573 LSREGSPAPL EPEPGASQPK LAVIQEARFA QSAPGSPLSS QPVLIAVQRP ENSBTAP00000004805/1-525 LSREGSPAPL EPEPGASQPK LAVIQEARFA QSAPGSPLSS QPVLIAVQRP ENSP00000335677/1-660 LSREGSPAPL EPEPGAAQPK LAVIQEARFA QSAPGSPLSS QPVLITVQRQ BACU011652/1-491 LSREGSPAPL EPEPGASQPK LAVIQEARFA QSAPGSPLSS QPVLIAVQRP ENSTTRP00000012475/1-642 LSREGSPAPL EPEPGASQPK LAVIQEARFA QSAPGSPLSS QPVLIAVQRP 501 550 bmy_02216T0/1-573 LPPTIKPVTY TVAAPVTTST SQQPVVQTVH VVHQIPAVSV TSVAGLAPAN ENSBTAP00000004805/1-525 LPPTIKPVTY TVAAPVTTST SQQPVVQTVH VVHQIPAVSV TSVAGLAPAN ENSP00000335677/1-660 LPQAIKPVTY TVATPVTTST SQPPVVQTVH VVHQIPAVSV TSVAGLAPAN BACU011652/1-491 LPPTIKPVTY TVAAPVTTST SQQPVVQTVH VVHQIPAVSV TSVAGLAPAN ENSTTRP00000012475/1-642 LPPTIKPVTY TVAAPVTTST SQQPVVQTVH VVHQIPAVSV TSVAGLAPAN 551 600 bmy_02216T0/1-573 TYTVAGQAVV TQAAVLAPPK AEPQENGDHR EVKVKVEPIP AISHATLGAA ENSBTAP00000004805/1-525 TYTVAGQAVV TQAAVLAPPK AEPQENGDHR EVKVKVEPIP AISHATIGAA ENSP00000335677/1-660 TYTVSGQAVV TPAAVLAPPK AEAQENGDHR EVKVKVEPIP AIGHATLGTA BACU011652/1-491 TYTVAGQAVV TQAAVLAPPK AEPQENGDHR EVKVKVEPIP AISHATLGAA ENSTTRP00000012475/1-642 TYTVAGQAVV TQAAVLAPPK AEPQENGDHR EVKVKVEPIP AISHATLGAA 601 650 bmy_02216T0/1-573 GRIIQTSQTT PVQTVTIVQQ APLGQHQLPI KTVTQNGTHV VPIPAAVHGQ ENSBTAP00000004805/1-525 GRIIQTSQTT PVQTVTIVQQ APLGQHQLPI KTVTQNGTHV VPIPAAVHGQ ENSP00000335677/1-660 SRIIQTAQTT PVQTVTIVQQ APLGQHQLPI KTVTQNGTHV ASVPTAVHGQ BACU011652/1-491 GRIIQTSQTT PVQTVTIVQQ APLGQHQLPI KTVTQNGTHV VPIPAAVHGQ ENSTTRP00000012475/1-642 GRIIQTSQTT PVQTVTIVQQ APLGQHQLPI KTVTQNGTHV VPIPAAVHGQ 651 700 bmy_02216T0/1-573 VNNEIFAFLN -YRKLNSAIG YRGIGCGNWL PCDSHWRSHL KREAFLNIYS ENSBTAP00000004805/1-525 VNNAAASPLH MLATHASASA SLPTKRQNGD PAEQPELKRV KTEDSEGLVI ENSP00000335677/1-660 VNNAAASPLH MLATHASASA SLPTKRHNGD QPEQPELKRI KTEDGEGIVI BACU011652/1-491 VNNAAASPLH MLATHASASA SLPTKRQNGD PAEQPELKRV KTEDGEGLVI ENSTTRP00000012475/1-642 VNNAAASPLH MLATHASASA SLPTKRQNGD PAEQPELKRV KTEDGEGLVI 701 750 bmy_02216T0/1-573 TLKSTVVQYN SWHTGAGME- ---------- ---------- ---------- ENSBTAP00000004805/1-525 ALSVDAPQA- -AMREKGVQN ---------- ---------- ---------- ENSP00000335677/1-660 ALSVDTPPA- -AVREKGVQN ---------- ---------- ---------- BACU011652/1-491 ALSMDXXXXX RASRTSGRES VSHFNVNSVV PKGDTASHRR SERVPSVGRG ENSTTRP00000012475/1-642 ALSMDAPPA- -AVREKGVQN ---------- ---------- ---------- 751 800 bmy_02216T0/1-573 ---------- ------- ENSBTAP00000004805/1-525 ---------- ------- ENSP00000335677/1-660 ---------- ------- BACU011652/1-491 PCGWTSPQHW KHKPRWP ENSTTRP00000012475/1-642 ---------- -------