KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:49 2014 Check: 00 .. Name: ENSP00000358307/1-726 Len: 811 Check: 6130 Weight: 1.00 Name: ENSBTAP00000004806/1-726 Len: 811 Check: 2411 Weight: 1.00 Name: BACU004663/1-703 Len: 811 Check: 5891 Weight: 1.00 Name: bmy_03052T0/1-793 Len: 811 Check: 9223 Weight: 1.00 Name: ENSTTRP00000011372/1-641 Len: 811 Check: 6991 Weight: 1.00 // 1 50 ENSP00000358307/1-726 MAAPGGRGRS LSGLLPAQTS LEYALLDAVT QQEKDSLVYQ YLQKVDGWEQ ENSBTAP00000004806/1-726 MAAPGARSCN LSGLLPAQTS LEYALLDAVT QEEKDGLVYQ YLQKVDGWEQ BACU004663/1-703 MAAPGARSCS LSGLLPAQTS LEYALLDAVT QEEKDSLVYQ YLQKVDGWEQ bmy_03052T0/1-793 MAAPGARSCS LSGLLPAQTS LEYALLDAVT QEEKDSLVYQ YLQKVDGWEQ ENSTTRP00000011372/1-641 MAAPGARSCS LSGLLPAQTS LEYALLDAVT QEEKDSLVYQ YLQKVDGWEQ 51 100 ENSP00000358307/1-726 DLSVPEFPE- ---------- ---------- ---------- ---------- ENSBTAP00000004806/1-726 DLLVPEFPE- ---------- ---------- ---------- ---------- BACU004663/1-703 DLSVPEFPE- ---------- ---------- ---------- ---------- bmy_03052T0/1-793 DLSVPEFPEG EGLASGWGPL PEPPLPRGRR PPLKRWARRG SAAVPDRGAS ENSTTRP00000011372/1-641 DLSVPEFPE- ---------- ---------- ---------- ---------- 101 150 ENSP00000358307/1-726 ---------- ---------G LEWLNTEEPI SVYKDLCGKI VVLDFFTYCC ENSBTAP00000004806/1-726 ---------- ---------G LEWLNTEEPI SVYKDLCGKV VILDFFTYCC BACU004663/1-703 ---------- ---------G LEWLNTEESI SVYKDLCGKV VVLDFFTYCC bmy_03052T0/1-793 PSRASVPRRR RRRRRRRTGG LEWLNTEESI SVYKDLCGKV VVLDFFTYCC ENSTTRP00000011372/1-641 ---------- ---------G LEWLNTEESI SVYKDLCGKV VVLDFFTYCC 151 200 ENSP00000358307/1-726 INCIHLLPDL HALEHTYSDK DGLLIIGVHS AKFPNEKVLD NIKSAVLRYN ENSBTAP00000004806/1-726 INCIHLLPDL HALEHTYSDK DGLLIVGVHS AKFPNEKVLD NIRSAVLRYN BACU004663/1-703 INCIHLLPDL HALEHTYSDK DGLLIVGVHS AKFPNEKVLD NVKSAILRYN bmy_03052T0/1-793 INCIHLLPDL HALEHTYSDK DGLLIVGVHS AKFPNEKVLD NVKSAILRYN ENSTTRP00000011372/1-641 INCIHLLPDL HALEHTYSDK DGLLIVGVHS AKFPNEKVLD NVKSAILRYN 201 250 ENSP00000358307/1-726 ITHPMVNDAD ASLWQELEVS CWPTLVILGP RGNMLFSLIG EGHKDKLFLY ENSBTAP00000004806/1-726 ITHPVVNDAD ASLWQELEVS CWPTLIILGP RGNMLFSLIG EGHKEKLFLY BACU004663/1-703 ITHPVVNDAD ASLWQELEVS CWPTLIILGP RGNMLFSLIG EGHREKLLLY bmy_03052T0/1-793 ITHPVVNDAD ASLWQELEVS CWPTLIILGP RGNMLFSLIG EGHREKLFLY ENSTTRP00000011372/1-641 ITHPVVNDAD ASLWQELEVS CWPTLIILGP RGNMLFSLIG EGHREKLFLY 251 300 ENSP00000358307/1-726 TSIALKYYKD RGQIRDNKIG IKLYKDSLPP SPLLFPGKVT VDQVTDRLVI ENSBTAP00000004806/1-726 TSIALKYYKD RGQIRANKIG IKLYKDSLPP SPLLFPGKIT VDHVSNRLVI BACU004663/1-703 TSIALKYYKD RGQIRDNKIG IKLYKDSLPP SPLLFPGKVT VDHVSNRLVI bmy_03052T0/1-793 TSIALKYYKD RGQIRDNKIG IKLYKDSLPP SPLLFPGKVT VDHVSNRLVI ENSTTRP00000011372/1-641 TSIALKYYKD RGQIRDNKIG IKLYKDSLPP SPLLFPGKVT VDHVSNRLVI 301 350 ENSP00000358307/1-726 ADTGHHRILV VWKNGQIQYS IGGPNPGRKD GIFSESTFNS PQGVAIMNNI ENSBTAP00000004806/1-726 ADTGHHRILV VWKNGQIQYS IGGPNPGRKD GIFSESSFNS PQGVAIMNNI BACU004663/1-703 ADTGHHRILV VWRNGQIQYS IGGPNPGRKD GMFSESTFNS PQGVAIMDNI bmy_03052T0/1-793 ADTGHHRILV VRRNGQIQYS IGGPNPGRKD GMFSESTFNS PQGVAIMDNI ENSTTRP00000011372/1-641 ADTGHHRILV VWRNGQIQYS IGGPNPGRKD GMFSESTFNS PQGVAIMDNI 351 400 ENSP00000358307/1-726 IYVADTENHL IRK------- IDLEAEKVST VAGIGIQGTD KEGGAKGEQQ ENSBTAP00000004806/1-726 IYVADTENHL IRK------- IDLEAEMVST VAGIGIQGTD KEGGAKGDEQ BACU004663/1-703 IYVADTENHL IRK------- IDLEAETVST VAGIGIQGTD KEGGAKGEEQ bmy_03052T0/1-793 IYVADTENHL IRKSYDYDYI IDLEAEMVST VAGIGIQGTD KEGGAKGEEQ ENSTTRP00000011372/1-641 IYVADTENHL IRK------- IDLEAEMVST VAGIGIQGTD KEGGAKGEEQ 401 450 ENSP00000358307/1-726 PISSPWDVVF GTSGSEVQRG DILWIAMAGT HQIWALLLD- ---------- ENSBTAP00000004806/1-726 PISSPWDVVF GRSGPEVQRD NILWIAMAGT HQIWALLLD- ---------- BACU004663/1-703 PISSPWDVVF GRSGSEVQRD DILWIAMAGT QXXXXXXXXW TVADYQRKTT bmy_03052T0/1-793 PISSPWDVVF GRSGSEVQRD DILWIAMAGT HQIWAFLLD- ---------- ENSTTRP00000011372/1-641 PISSPWDIVF GRSGSEVQRD DILWIAMAGT HQIWAFLLD- ---------- 451 500 ENSP00000358307/1-726 -------SGK LPKKNELTKG TCLRFAGSGN EENRNNAYPH KAGFAQPSGL ENSBTAP00000004806/1-726 -------CGR LPKKNELKKG TCLRFAGSGN EENRNNAYPH KAGFAQPSGL BACU004663/1-703 VRSSASCAGR ERRRCELKKG TCLRFAGSGN EENRNNSYPH KAGFAQPSGL bmy_03052T0/1-793 -------CGR LPKKNELKKG TCLRFAGSGN EENRNNSYPH KAGFAQPSGL ENSTTRP00000011372/1-641 -------CGR LPKKNELKKG TCLRFAGSGN EENRNNSYPH KAGFAQPSGL 501 550 ENSP00000358307/1-726 SLASEDPWSC LFVADSESST VRTVSLKDGA VKHLVGGERD PMNLFAFGDV ENSBTAP00000004806/1-726 SLASEGPWSC LFVADSESST VRTVSLKDGA VKHLVGGERD PMNLFAFGDV BACU004663/1-703 SLASEDPWSC LFVADSESST VRTVSLKDGA VKHLVGGERD PM-------- bmy_03052T0/1-793 SLASEDPWSC LFVADSESST VRTVSLKDGA VKHLVGGERD PMNLFAFGDV ENSTTRP00000011372/1-641 SLASEDPWSC LFVADSESST VRTVSLKDGA VKHLVGGERD PMNLFAFGDV 551 600 ENSP00000358307/1-726 DGVGINAKLQ HPLGVTWDKK RNLLYVADSY NHKIKVVDPK TKNCTTLAGT ENSBTAP00000004806/1-726 DGVGINARLQ HPLGVTWDQK RNLLYVADSY NHKIKVVDPK TKNCTTLAGT BACU004663/1-703 ---------- ---------- ---------- ---IKVVDPK TKNCTTLAGT bmy_03052T0/1-793 DGVGINAKLQ HPLGVTWDKK RNLLYVADSY NHKIKVVDPX TKNCTTLAGT ENSTTRP00000011372/1-641 DGVGINAKLQ HPLGVTWDKR RNLVYVADSY NHKIKVVDPK TKNCTTLAGT 601 650 ENSP00000358307/1-726 GDTNNVTSSS FTESTFNEPG GLCIGENGEL LYVADTNNHQ IKVMDLETKM ENSBTAP00000004806/1-726 GNASNMIGSS FTDSTFNEPG GLCIGENGQL LYVADTNNHQ IKVLDLETKT BACU004663/1-703 GDASNVIGSS FTNSTFNEPG GLCIGGNGQL LYVADTNNHQ IKVMDLETKT bmy_03052T0/1-793 GDASNVIGSN FTNSTFNEPG GLCIGGNGQL LYVADTNNHQ IKVMDLETKT ENSTTRP00000011372/1-641 GDASNVIGSN FTDSTFNEPG GLCIGENGQL LYVADTNNHQ IKVMDLETKT 651 700 ENSP00000358307/1-726 VSVLPIFRSE NAVVDGPFLV EKQKTLPKLP KSAPSIRLSP VTACAGQTLQ ENSBTAP00000004806/1-726 VSVFPVFRSE NAVVDGPCLA GKPKTLPKLP KSAPGIRLAP VAASPGQTLQ BACU004663/1-703 VSVLPVFRSE SATVDGPFLA EKQKTLPRLP KSAPGIRLSP VAASPGQTLQ bmy_03052T0/1-793 VSVLPVFRSE SAMVDGPFLA EKQKTLPRLP KSAPGIRLSP VAASPGQTLQ ENSTTRP00000011372/1-641 VSVLPVFRSE SAMVDGPFPA EKQKTLPRLP KSAPDIRLSP VAASPGQTLQ 701 750 ENSP00000358307/1-726 FKLRLDLPSG SKLTEGVSSC WFLTAEGNEW LLQGQIAAGD IENISSQPTI ENSBTAP00000004806/1-726 FKLRLDLPSG TKLTEGASSC WFLSAEGNEW LLQGQIPSGE IESISNQPTI BACU004663/1-703 FKLRLDLPSG TKLTEGAPSC WFLSAEGNEW LLQGQIPSGE IESISSQPTI bmy_03052T0/1-793 FKLRLDLPSG TKLTEGAPSC WFLSAEGNEW LLQGQIPSGE IESISSQPTI ENSTTRP00000011372/1-641 FKLRLDLPSG TKLTEGAPSC WFLSAE---- ---------- ---------- 751 800 ENSP00000358307/1-726 SLQIPDDCLS LEAIVSVSVF LYYCSADSSA CMMKAILFSQ PLQITDTQQG ENSBTAP00000004806/1-726 SLQIPGDCLS LEAILSISVF LYYCSSDSSA CMMKGILFSQ PLQITDTQQD BACU004663/1-703 SLQIPGDCLS LEAVLSISVF LYYCSADSSA CMMKGVLFSQ PLQITDTQQD bmy_03052T0/1-793 SLQIPGDCLS LEAVLSISVF LYYCSADSSA CMMKGVLFSQ PLQITDTQQD ENSTTRP00000011372/1-641 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000358307/1-726 CIAPVELRYV F ENSBTAP00000004806/1-726 CIPPVELKYI F BACU004663/1-703 YIPPVELKYI F bmy_03052T0/1-793 YIPPVELKYI F ENSTTRP00000011372/1-641 ---------- -