KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:50 2014 Check: 00 .. Name: ENSP00000385616/1-738 Len: 920 Check: 4074 Weight: 1.00 Name: ENSBTAP00000004813/1-728 Len: 920 Check: 1225 Weight: 1.00 Name: ENSTTRP00000005313/1-699 Len: 920 Check: 8023 Weight: 1.00 Name: bmy_21233T0/1-556 Len: 920 Check: 8956 Weight: 1.00 Name: BACU013369/1-868 Len: 920 Check: 1445 Weight: 1.00 // 1 50 ENSP00000385616/1-738 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004813/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005313/1-699 ---------- ---------- ---------- ---------- ---------- bmy_21233T0/1-556 ---------- ---------- ---------- ---------- ---------- BACU013369/1-868 MGETEGKKDE ADYKRLQTFP LVRHSDMPEE MRVETMELCV TACEKFSNNN 51 100 ENSP00000385616/1-738 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004813/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005313/1-699 ---------- ---------- ---------- ---------- ---------- bmy_21233T0/1-556 ---------- ---------- ---------- ---------- ---------- BACU013369/1-868 ESAAKMIKET MDKKFGSSWH VVIGEGFGFE ITHECPSANA SMVQFSNAAR 101 150 ENSP00000385616/1-738 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004813/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005313/1-699 ---------- ---------- ---------- ---------- ---------- bmy_21233T0/1-556 ---------- ---------- ---------- ---------- ---------- BACU013369/1-868 AASCFLQAPP RRAAMTTEAL VLGPWPRADT RDPVTPLKGL PVDQFGKEAR 151 200 ENSP00000385616/1-738 ---------- -----MSRRS QRLTRY-SQG DDD-GSSSSG GSSVAGSQST ENSBTAP00000004813/1-728 ---------- -----MSRRS QRLTRYSSQG EDDGGSSSSG GSSVMGSQST ENSTTRP00000005313/1-699 ---------- ---------- ---------- ---------- ---------- bmy_21233T0/1-556 ---------- -----MSRRS QRLTRY-SQG DDD-GSSSSG GSSVMGSQSA BACU013369/1-868 EPANSSGEGS PAHLIMSRRS QRLTRY-SQG DDD-GSSSSG GSSVMGSQSA 201 250 ENSP00000385616/1-738 LFKDSPLRTL KRKSSNMKRL SPAPQLGPSS DAHTSYYSES LVHESWFP-- ENSBTAP00000004813/1-728 LFKDSPLRTL KKKTNNSKRL SPAPQLGPSS DTHT-YYSES VVRESYIGSP ENSTTRP00000005313/1-699 --------TL KKKSGNMKRL SPAPQLGPSS DRHTSYYSES VVRESYFGSP bmy_21233T0/1-556 LFKDSPL--- ---------- ---------- ---------- ---------- BACU013369/1-868 LFKDSPLRTL KRKSSNVKRL SPVPQLGPSS DRHTSYYSES VVRESYFGSP 251 300 ENSP00000385616/1-738 ---------P RSSLEE--LH GDANWGEDLR VRRRRGTGGS ESSRASGLVG ENSBTAP00000004813/1-728 RAASIAASLT RHSLLD---- -DPYWSEDLR VRRRRGTGGT DSSKPNGLPE ENSTTRP00000005313/1-699 ---------P RNSILDDQLR GDPFWSEDLR V-RRRDTGGT ESSKVNGLPE bmy_21233T0/1-556 ---------- ---------- ---------- ---------- --SKVNGLPE BACU013369/1-868 RAASIAASLT RNSILDDQPH GDPFWSEDLR VRRRRGTGGT ESSKVNGLPE 301 350 ENSP00000385616/1-738 RKATEDFLGS SSGYSSEDDY VEDSEGRGSK VTETEPVSSF PAGYSDVDQQ ENSBTAP00000004813/1-728 NKLSEDFLGS SSGYSSEDDY V--------- ---------- --GYSETDHQ ENSTTRP00000005313/1-699 NKLSEDFLGS SSGYSSEDDY VEDSGGGGTR VRTTG-VSSS SAGYSETDQQ bmy_21233T0/1-556 NKLSEDFLGS SSGYSSEDDY V--------- ---------- ---------- BACU013369/1-868 NKLSEDFLGS SSGYSSEDDY V--------- ---------- --GYSETDQQ 351 400 ENSP00000385616/1-738 SSSSRLRSAV SRAGSLLWMV ATSPGRLFRL LYWWAGTTWY RLTTAASLLD ENSBTAP00000004813/1-728 GSGSRLRNAV SRVGSLLWMV VTSPGRLFGL LYWWIGTTWY RLTTAASLLD ENSTTRP00000005313/1-699 GSGSRLRNAV SRAGSLFWMV FTSPGRLFGL LYWWIGTTWY RLTTAASLLD bmy_21233T0/1-556 ---------- ---------- ----GRLFGL LYWWIGTTWY RLTTAASLLD BACU013369/1-868 GSGARLRNAV SRAGSLFWMV VTSPGRLFGL LYWWIGTTWY RLTTAASLLD 401 450 ENSP00000385616/1-738 VFVLTRRFSS LKTFLWFLLP LLLLTCLTYG AWYFYPYGLQ TFHPALVSWW ENSBTAP00000004813/1-728 VFVLTRRFSS LKMFLWFLLL LLLLTGLTYG AWYFYPFGLQ TLHPAVVSWW ENSTTRP00000005313/1-699 VFVLTRRFSS LKTFLWFLLL LLLLTGLTYG AWYCYPFGLQ TFHPAVASWW bmy_21233T0/1-556 VFVLTRRFSS LKTFLWFLLL LLLLTGLTYG AWYCYPFGLQ TLHPAVASWW BACU013369/1-868 VFVLTRRFSS LKTFLWFLLL LLLLTGLTYG AWYCYPFGLQ TLHPAVASWW 451 500 ENSP00000385616/1-738 AAKDSRRPDE GWEARDSSPH FQAEQRVMSR VHSLERRLEA LAAEFSSNWQ ENSBTAP00000004813/1-728 ASKGSIGQRE VWESRDSSPH FQAEQRILSR VHSLERRLDA LAAEFSSSWQ ENSTTRP00000005313/1-699 ASKGSSGQRA VWGSRDSSPH FQAEQRILSR VHSLERRLEA LAAEFSSSWQ bmy_21233T0/1-556 ASKGSGGQRA VWGSRDSSPH FQAEQRILSR VHSLERRLEA LAAEFSSSWQ BACU013369/1-868 ASKGSGGQRA VWASRDSSPH FQAEQRILSR VHSLERRLEA LAAEFSSSWQ 501 550 ENSP00000385616/1-738 KEAMRLERLE LRQGAPGQ-G GGGGLSHEDT LALLEGLVSR REAALKEDFR ENSBTAP00000004813/1-728 KEAMRLERLE LQQGAGGQGG GGGGLSHEDT LALLEGLVSR REAALKEDLR ENSTTRP00000005313/1-699 KEAMRLERLE LRQGAGGQ-G GSGSLSHEDT LALLEGLVSR REAALKEDFR bmy_21233T0/1-556 KEAMRLERLE LRQGAGGQ-G ASGSLSHEDT LALLEGLVSR REAALKEDFR BACU013369/1-868 KEAMRLERLE LRQGAGGQ-G GSGSLSHEDT LALLEGLVSR REAALKEDFR 551 600 ENSP00000385616/1-738 RETAARIQEE LSALRAEHQQ DSEDLFKKIV RASQESEARI QQLKSEWQ-S ENSBTAP00000004813/1-728 RDTAARIQEE LVTLRSEHQQ DSEDLFKKIV QASQESEARL QQLKSEWQSR ENSTTRP00000005313/1-699 RDTAAQIQEE LVTLRAEHQQ DSEDLFKKIV QASQESEARL QELKSEWQ-R bmy_21233T0/1-556 RDTTAQI--- ---------- ---------- ---QESEARL QELKSEWQ-R BACU013369/1-868 RDTTAQI--- ---------- ---------- ---QESEARL QELKSEWQ-R 601 650 ENSP00000385616/1-738 MTQESFQESS VKELRRLEDQ LAGLQQELAA LALKQSSVAE EVGLLPQQIQ ENSBTAP00000004813/1-728 MTQESFQENA MKELGRLEGQ LAGLRQELAA LTLKQSLVED QVGLLPQQLQ ENSTTRP00000005313/1-699 MTQESFRESS MKELGRLGVQ LEGLRQELAA LTLKQSSVED QVGLLPQQLQ bmy_21233T0/1-556 MTQESFRESS MKELGRLGVQ LEGLRQELAA LTLKQSSVED QVGLLPQQLQ BACU013369/1-868 MTQESFRESS MKELGRLGVQ LEGLRQELAA LTLKQRSVED QVGLLPQQLQ 651 700 ENSP00000385616/1-738 AVRDDVESQF PAWISQFLAR GGGGRVGLLQ REEMQAQLRE LESKILTHVA ENSBTAP00000004813/1-728 AVRDDVESQF PAWVSQFLLR GGGTRTGLLQ QEEMEAQLRD LESRILTHVA ENSTTRP00000005313/1-699 AVRDDVESQF PAWVSQFLLR GGGSRTGLLQ REEVQAQLQE LESKILARVA bmy_21233T0/1-556 AVRDDVESQF PAWVSQFLLR GGGTRTGLLQ REEMQAQLQE LESKILAHVA BACU013369/1-868 AVRDDVESQF PAWVSQFLLR GGGTRTGLLQ REEMQAQLQE LESKILAHVA 701 750 ENSP00000385616/1-738 EMQGKSAREA AASLSLTLQK EGVIGVTEEQ VHHIVKQALQ RYSEDRIGLA ENSBTAP00000004813/1-728 EMQGKSAREA VASLGLTLQR EGVIGVTEEQ VHRIVNQALK RYSEDRIGMV ENSTTRP00000005313/1-699 EMQGKSAREA VASLGLTLQK EGVIGVTEEQ VHRIVNQALK RYSEDRIGMV bmy_21233T0/1-556 EMQGKSAREA VASLGLTLQE EGVIGVTEEQ VHRIVKQALK RYSEDRIGMV BACU013369/1-868 KMQGKSAREA VASLGLTLQE EGVIGVTEE- VHRIVKQALK RYSEDRIGMV 751 800 ENSP00000385616/1-738 DYALESGGAS VISTRCSETY ETKTALLSLF GIPLWYHSQS PRVILQPDVH ENSBTAP00000004813/1-728 DYALESGGAS VISTRCSETY ETKTALLSLF GIPLWYHSQS PRVILQPDVH ENSTTRP00000005313/1-699 DYALESGGAS VISTRCSETY ETKTALLSLF GIPLWYQSQS PRVILQPDVH bmy_21233T0/1-556 DYALESGGAS VISTRCSETY ETKTALLSLF GIPLWYQSQS PRVILQPDVH BACU013369/1-868 DYALESGGAS VISTRCSETY ETKTALLSLF GIPLWYQSQS PRVILQPDVH 801 850 ENSP00000385616/1-738 PGNCWAFQGP QGFAVVRLSA RIRPTAVTLE HVPKALSPNS TISSAPKDFA ENSBTAP00000004813/1-728 PGNCWAFQGP QGFAVVRLSA RIRPTAVTLE HVPKSLSPNS TISSAPKDFA ENSTTRP00000005313/1-699 PGNCWAFQGP QGFAVVRLSA RIRPTAVTLE HVPKSLSPNS TISSAPKDFA bmy_21233T0/1-556 PGNCWAFQGP QGFAVVRLSA RIRPTAVTLE HVPKSLSPNS TISSAPKDFA BACU013369/1-868 PGNCWAFQGP QGFAVVRLSA RIRPTAVTLE HVPKSLSPNS TISSAPKDFA 851 900 ENSP00000385616/1-738 IFGFDEDLQQ EGTLLGKFTY DQDGEPIQTF HFQAPTMATY QVVELRILTN ENSBTAP00000004813/1-728 IFGLDEDLQQ EGTPLGQFTY DQDGEPIQTF YFQDPKMATY QVVELRILTN ENSTTRP00000005313/1-699 VFGFDEDLQQ EGMLLGQFTY DQDGEPIQTF YFQGPKMAAY QVVELRILTN bmy_21233T0/1-556 IFG------- ---------- ---------- ----PKMATY QVVELRILTN BACU013369/1-868 IFGFDEDLQQ EGTLLGQFTY DQDGDPIQTF YLQGPKMATY QVVELRILTN 901 950 ENSP00000385616/1-738 WGHPEYTCIY RFRVHGEPAH ENSBTAP00000004813/1-728 WGHPEYTCIY RFRVHGEPAH ENSTTRP00000005313/1-699 WGHPEYTCIY RFRVHGEPTH bmy_21233T0/1-556 WGHPEYTCIY RFRVHGEPAP BACU013369/1-868 WGHPEYTCIY RFRVHGEPAP