KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:51 2014 Check: 00 .. Name: BACU005259/1-309 Len: 620 Check: 7713 Weight: 1.00 Name: ENSP00000379008/1-612 Len: 620 Check: 6882 Weight: 1.00 Name: ENSBTAP00000004823/1-597 Len: 620 Check: 5560 Weight: 1.00 Name: bmy_17032T0/1-324 Len: 620 Check: 2695 Weight: 1.00 Name: ENSTTRP00000003728/1-603 Len: 620 Check: 3200 Weight: 1.00 // 1 50 BACU005259/1-309 -----MVTEQ VRPG------ ---------- ---------- ---------- ENSP00000379008/1-612 -MAANSTSDL HTPGTQLSVA DIIVITVYFA LNVAVGIWSS CRASRNTVNG ENSBTAP00000004823/1-597 MAVDNSTSDA HTPGRQLTVV DIAIIAVYFA LNVAVGIWSS CRASRNTVRG bmy_17032T0/1-324 MAADNSTSGP HAPGPQLSVV DITIITVYFA LNVAVGIW-- ---------- ENSTTRP00000003728/1-603 --ADNSTSGP HAPGPQLSVV DITIITVYFA LNVAVGIWSS CRASRNTVSG 51 100 BACU005259/1-309 ---------- ---------- ---------- ---------- ---------- ENSP00000379008/1-612 YFLAGRDMTW WPIGASLFAS SEGSGLFIGL AGSGAAGGLA VAGFEWNATY ENSBTAP00000004823/1-597 YFLAGRDMTW WPIGASLFAS SEGSGLFIGL AGSGAAGGLA VAGFEWNATY bmy_17032T0/1-324 ---------- --MGASLFAS SEGSGLFIGL AGSGAAGGLA VAGFEWHATY ENSTTRP00000003728/1-603 YFLAGRDMTW GPMGASLFAS SEGSGLFIGL AGSGAAGGLA VAGFEWHATY 101 150 BACU005259/1-309 ---------- ---------- ---------- ---------- ---------- ENSP00000379008/1-612 VLLALAWVFV PIYISSEIVT LPEYIQKRYG GQRIRMYLSV LSLLLSVFTK ENSBTAP00000004823/1-597 VLLALAWVFV PIYLSSEIVT MPEYMQKRYG GQRIRMYLSV LSLLLSVFTK bmy_17032T0/1-324 VLLALAWVFV PIYISSEIVT MPEYIQKRYG GQRIRVYLSV LSLLL----- ENSTTRP00000003728/1-603 VLLALAWVFV PIYISSEIVT MPEYIQKRYG GQRIRMYLSV LSLLLSVFTK 151 200 BACU005259/1-309 ---------- ---------- ---------- ---------- ---------- ENSP00000379008/1-612 ISLDLYAGAL FVHICLGWNF YLSTILTLGI TALYTIAGGL AAVIYTDALQ ENSBTAP00000004823/1-597 ISIDLYAGAL FVHICLGWNF YLSTVIMLAI TALYTIAGGL TAVIYTDALQ bmy_17032T0/1-324 -SIDLYAGAL FVHICLGWNF YPSTILMLTI TALYTIAGGL AAVIYTDALQ ENSTTRP00000003728/1-603 ISIDLYAGAL FVHICLGWNF YLSTILMLAV TALYTIAGGL AAVIYTDALQ 201 250 BACU005259/1-309 ---------- ---------- ---------- ---------- -SC------- ENSP00000379008/1-612 TLIMVVGAVI LTIKAFDQIG GYGQLEAAYA QAIPSRTIAN TTCHLPRTDA ENSBTAP00000004823/1-597 TLVMVAGAVI LTIKAFEQIG GYEQLAEAYA QAVPSRTISN TTCHVPRADA bmy_17032T0/1-324 TLIMVVGAVI LTVKAFEQIG GYEQLAAAYA RAVPSRIIAN TTCHMPRXDA ENSTTRP00000003728/1-603 TLIMVVGAVI LTVKAFEQIG GYDQLAPAYA RAVPSRIISN TTCHVPRADA 251 300 BACU005259/1-309 ------PQPG ACPPQGGRAG ATRRPS---- ---------- ---------- ENSP00000379008/1-612 MHMFRDPHTG DLPWTGMTFG LTIMATWYWC TDQVIVQRSL SARDLNHAKA ENSBTAP00000004823/1-597 MHMFRDPYTA DLPWTGMTFG LTIMAAWYWC TDQVIVQRSL SARDLNHAKG bmy_17032T0/1-324 MHMFRDPYTG DLPWTGMTFG LTIMATWYWC TDQVIVQRSL SARDLNHAKG ENSTTRP00000003728/1-603 MHMFRDPSTG DLPWTGMTFG LTVMATWYWC TDQVIVQRSL SARDLNHAKG 301 350 BACU005259/1-309 ---------- ---------- ---------- ---------- --RADDVGCV ENSP00000379008/1-612 GSILASYLKM LPMGLIIMPG MISRALFPGA HVYEERHQVS VSRTDDVGCV ENSBTAP00000004823/1-597 GSILASYLKM LPMGLMVMPG MISRVLFP-- ---------- ----DDVGCV bmy_17032T0/1-324 GSILASYLKM LPMGLIIMPG MISRVLFPG- ---------- ---------- ENSTTRP00000003728/1-603 GSILASYLKM LPMGLIIMPG MISRVLFPGG H--------A SSRADDVGCV 351 400 BACU005259/1-309 VPSECLRACG TETGCSNVAY PKLVMELMPT GLRGLMIAVM MAALMSSLTS ENSP00000379008/1-612 VPSECLRACG AEVGCSNIAY PKLVMELMPI GLRGLMIAVM LAALMSSLTS ENSBTAP00000004823/1-597 VPAECLRACG AEIGCSNIAY PKLVMELMPT GLRGLMVAVM MAALMSSLTS bmy_17032T0/1-324 ---------- ---------- --------RT GPGG------ ---------- ENSTTRP00000003728/1-603 VPSECLRACG AEIGCSNIAY PKLVMELMPT GLRGLMIAVM MAALMSSLTS 401 450 BACU005259/1-309 IFNSSSTLFT MDIWKWLRPG AGERELLLPQ QSWALRDELV IAVLVGVSVA ENSP00000379008/1-612 IFNSSSTLFT MDIWRRLRPR SGERELLLVG R-------LV IVALIGVSVA ENSBTAP00000004823/1-597 IFNSSSTLFT MDIWRRLRPR AGERELLLVG R-------LV IVVLVGVSVA bmy_17032T0/1-324 ---------- -----W---- AGCR----VQ R--------- ---------- ENSTTRP00000003728/1-603 IFNSSSTLFT MDIWKWLRPR ARERELLLVG R-------LV TVVLIGVSVA 451 500 BACU005259/1-309 WIPVLQGSNG GQLFIYMQSV TSSLAPPVTA VFVLGIFWRR ANEQGAFWGL ENSP00000379008/1-612 WIPVLQDSNS GQLFIYMQSV TSSLAPPVTA VFVLGVFWRR ANEQGAFWGL ENSBTAP00000004823/1-597 WIPVLQGSNG GQLFIYMQSV TSSLAPPVTA VFVLGIFWRR ANEQGAFWGL bmy_17032T0/1-324 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003728/1-603 WIPVLQGSNS GQLFIYMQSV TSSLAPPVTA VFVLGIFWRR ANEQGAFWGL 501 550 BACU005259/1-309 MAGLAVGATR LVLEFLHPAP PCGRPEQRPA ILRSVHYLHF AVALFVLSGA ENSP00000379008/1-612 IAGLVVGATR LVLEFLNPAP PCGEPDTRPA VLGSIHYLHF AVALFALSGA ENSBTAP00000004823/1-597 MAGLAVGATR LVLEFLHPAP PCGHPDTRPP ILHGVHYLHF AVALFLLSGA bmy_17032T0/1-324 ---------- ---------S PGGEVKDRSK ---------- ---------- ENSTTRP00000003728/1-603 MAGLAVGATR LVLEFLHPAP PCGHPEDRPA VLHSIHYLHF AVALFVLSGA 551 600 BACU005259/1-309 VVVAGSLLTP PPQGVQIENL TWWTLAKDLP SGAKTGDHRA SQKHAFWARV ENSP00000379008/1-612 VVVAGSLLTP PPQSVQIENL TWWTLAQDVP LGTKAGDGQT PQKHAFWARV ENSBTAP00000004823/1-597 VVVAGSLLTP HPQGVQIQSL TWWTLAQDLP LGVKTGDGRA SQRHAFWARV bmy_17032T0/1-324 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003728/1-603 VVVAGSLLTP APQGIQIENL TWWTLAQDLP SGAKTGDPRA SQKHAFWARV 601 650 BACU005259/1-309 CGFNAILLMC VNIFFYAYFA ENSP00000379008/1-612 CGFNAILLMC VNIFFYAYFA ENSBTAP00000004823/1-597 CGVNAILLMC VNIFFYTYFA bmy_17032T0/1-324 ---------- ---------- ENSTTRP00000003728/1-603 CGFNAILLVC VNVFFYAYFA