KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:51 2014 Check: 00 .. Name: ENSTTRP00000003731/1-808 Len: 892 Check: 2819 Weight: 1.00 Name: bmy_17033T0/1-826 Len: 892 Check: 7441 Weight: 1.00 Name: BACU005260/1-786 Len: 892 Check: 9452 Weight: 1.00 Name: ENSP00000373647/1-823 Len: 892 Check: 768 Weight: 1.00 Name: ENSBTAP00000004828/1-817 Len: 892 Check: 5379 Weight: 1.00 // 1 50 ENSTTRP00000003731/1-808 MAFSQVQCLD DSHVNWRSS- EAKPEFFYSE GQRLALEALV ARGPDAFYDV bmy_17033T0/1-826 MGP------- -----WRRLW QVGGLDVCSG QQRWALVCCV ---------- BACU005260/1-786 ---------- -----MTRV- ---PEHQAPT PGTSGSVC-- ---------- ENSP00000373647/1-823 MAFSQVQCLD DNHVNWRSS- ESKPEFFYSE EQRLALEALV ARGRDAFYEV ENSBTAP00000004828/1-817 MAFSQVQCLD DSHVNWRSS- EAKPEFFYSE EQRLALEALA ANGRDAFYEV 51 100 ENSTTRP00000003731/1-808 LKRENIRDFL SELELRRIVE TIEVYDPGSE DPRASGQPRG PEDGELGDGE bmy_17033T0/1-826 ---------- ---------- ------PLCC PVGRGGEGRS DTEGQGLPAT BACU005260/1-786 ---------- ---------- ------PTVL PPATSGQPRG PEDGRVGDGE ENSP00000373647/1-823 LKRENIRDFL SELELKRILE TIEVYDPGSE DPRGTGPSQG PEDNGVGDGE ENSBTAP00000004828/1-817 LKRENIRDFL SELELRRILE TIEVYDPGSE DPRAGTQPRG PED-----GD 101 150 ENSTTRP00000003731/1-808 EGSGEEGART EAETLPSLEY ---------- -----WPQKS DRSIPKLDLG bmy_17033T0/1-826 EPCQAPAPAD YPTPWPCATF PYTFLAWVLF SAGLCYGNSS PRTVP-LSIP BACU005260/1-786 EGSGEGGART EAEPLPSLEY ---------- -----WPQKS DRSIPQLDLG ENSP00000373647/1-823 EASGADGVPI EAEPLPSLEY ---------- -----WPQKS DRSIPQLDLG ENSBTAP00000004828/1-817 AASAAEGTPT EAEPLPSLEY ---------- -----WPQKS DRSIPQLDLG 151 200 ENSTTRP00000003731/1-808 ---------- ----WPDTIA YRGVTRA--- --SVYMQPPI D--------- bmy_17033T0/1-826 CCRRVQPAPP TGHLYPERRS YACSFRARRA GTSVPVPRPQ GAEPGWAPEE BACU005260/1-786 ---------- ----WPDTIA YRGVTRA--- --SVYMQPPI DGQAHIKEVV ENSP00000373647/1-823 ---------- ----WPDTIA YRGVTRA--- --SVYMQPPI D--------- ENSBTAP00000004828/1-817 ---------- ----WPDTIA YRGVTRA--- --SVYMQPPI D--------- 201 250 ENSTTRP00000003731/1-808 ---------- ---GQAHIKE VV---RKMVS QAQKVIAVVX XXXXXXXXXX bmy_17033T0/1-826 GGGRGRARRP ---GEAPVSP ATCPDGPGLP SCSQVIAVVM DMFTDVDIFK BACU005260/1-786 RKMISQAQKP PIDGQAHIKE VV---RKMIS QAQKVIAVVM DMFTDVDIFK ENSP00000373647/1-823 ---------- ---GQAHIKE VV---RKMIS QAQKVIAVVM DMFTDVDIFK ENSBTAP00000004828/1-817 ---------- ---GQAHIKE VV---RKMIS QAQKVIAVVM DMFTDVDIFK 251 300 ENSTTRP00000003731/1-808 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX NL-VRSSGGT bmy_17033T0/1-826 DLLDASFKRK VAVYIIVDES SVKHFLHMCA RAHMHLGHLK NLRVRSSGGT BACU005260/1-786 DLLDASFKRK VAVYVIVDES SVKHFLHMCA RARMHLGHLK NLRVRSSGGT ENSP00000373647/1-823 DLLDAGFKRK VAVYIIVDES NVKYFLHMCE RACMHLGHLK NLRVRSSGGT ENSBTAP00000004828/1-817 DLLDAGFKRK VAVYIIVDES NVKYFLHMCE RARMHLGHLK NLRVRSSGGT 301 350 ENSTTRP00000003731/1-808 EFFTRSA-KF K-ALTQKFMF VDGDRAICGS YSFTWSAART DRNVISVLSG bmy_17033T0/1-826 EFFTRSATKF KGALAQKFMF VDGDRAICGS YSFTWSAART DRNVISVLSG BACU005260/1-786 EFFTRSATKF KGALAQKFMF VDGDRAICGS YSFTWSAART DRNVISVLSG ENSP00000373647/1-823 EFFTRSATKF KGALAQKFMF VDGDRAVCGS YSFTWSAART DRNVISVLSG ENSBTAP00000004828/1-817 EFFTRSATKF KGALAQKFMF VDGDRAICGS YSFTWSAART DRNVISVLSG 351 400 ENSTTRP00000003731/1-808 QVVEIFDRQF QELYLTSHGV SLKDIPMEKE PEPEPVVLHS VVPQVPSGTM bmy_17033T0/1-826 QVVEMFDRQF QELYLTSHGV SLDGIPMEKE PEPEPIVLHS VVPQVPSGTM BACU005260/1-786 QVVEMFDRQF QELYLTSHGV SLNGIPMEKE PESEPIVLHS VVPQVPSGTM ENSP00000373647/1-823 QVVEMFDRQF QELYLMSHSV SLKGIPMEKE PEPEPIVLPS VVPLVPAGTV ENSBTAP00000004828/1-817 QVVEMFDRQF QELYLMSHSV CLKDIPMEKE PEPEPIVLPP SVPLVPSGTV 401 450 ENSTTRP00000003731/1-808 AKKLVNPKYA LVKAKSADEI AKLSSEQREA SRTLGVRGTA LAELPGDLPE bmy_17033T0/1-826 AKKLVNPKYA LVKAKSADEI ARLSSEKQEA ARTLGVRDTA LAELPGGLPE BACU005260/1-786 AKKLVNPKYA LVKAKSADEI AKLSSEKQEA ARTLGVRDTA LAELPGGLPE ENSP00000373647/1-823 AKKLVNPKYA LVKAKSVDEI AKISSEKQEA KKPLGLKGPA LAEHPGELPE ENSBTAP00000004828/1-817 AKKLVNPKYA LVKAKSADEI AKSSSEKQDT AKPAGVRGAV LAERPGDLPE 451 500 ENSTTRP00000003731/1-808 PPLPIHPGLL NLERANMFEY LPTWVEPDPE PGSDILGYIN IIDPNIWNPQ bmy_17033T0/1-826 PSLPIHQGLL NLERANMFEY LPTWVEPDPE PGSDILGYIN IIDPKIWNPQ BACU005260/1-786 PSLPIHQGLL NLERANMFEY LPTWVEPDPE PGSDILGYIN IIDPNIWNPQ ENSP00000373647/1-823 LLPPIHPGLL HLERANMFEY LPTWVEPDPE PGSDILGYIN IIDPNIWNPQ ENSBTAP00000004828/1-817 PPLPVHPGLL NLERANMFDY LPTWVEPDPE PGSDILGYIN IIDPNIWNPQ 501 550 ENSTTRP00000003731/1-808 PSQMNRIKIQ DTSQART--Q LWRQSQD--- ---PCP---P RSPQDAVPAE bmy_17033T0/1-826 PNQMNRIKIR DTSQAGT--Q LWRQSQD--- ---SSPAPQP RSPQDGVPAE BACU005260/1-786 PSQMNRIKIQ DTSQAGT--Q LWRQSQD--- ---SSPAPQP RSPQDGVPAE ENSP00000373647/1-823 PSQMNRIKIR DTSQASAQHQ LWKQSQDSRP RPEPCPPPEP SAPQDGVPAE ENSBTAP00000004828/1-817 PSQMNRIKIR DTSQAGT--Q LWRQSQD--- ---PGPALQS SAPPDGIPAE 551 600 ENSTTRP00000003731/1-808 NSRPQGDTEP RPPVAKPRTV PVADLLAQEG GGVGWALATP EGQAAHNRTD bmy_17033T0/1-826 NSLPQWDAEP CPPVPKPRTV PVADLLAQEG GGVGWALETP EGRAPHNRTD BACU005260/1-786 NSLPQWDAEP CPPVPKPWTV PVADLLAQEG GGVGWALETP EGRAPHNRTD ENSP00000373647/1-823 NGLPQGDPEP LPPVPKPRTV PVADVLARDS SDIGWVLELP KEEAPQNGTD ENSBTAP00000004828/1-817 NSLPQGDAQP RPPVPKPRTV PVADLLAQEG GGAGWALETP EEESPHNGMD 601 650 ENSTTRP00000003731/1-808 HGLPRTAGPG HAPLQYQLSM TQDDPDSGGP VVPNGL--EG EEEEDDDDYV bmy_17033T0/1-826 HGLPRTAGPG HAPLQRQLSV TQDDPESGGP VVPNGL--EG EEEEDDDDYV BACU005260/1-786 HGLPRTAGPG HAPLQRQLSV TQDDPESGGP VVPNGLEEEE EEEEDDDDYV ENSP00000373647/1-823 HRLPRMAGPG HAPLQRQLSV TQDDPESLGV GLPNGL--DG VEEEDDDDYV ENSBTAP00000004828/1-817 HGLSRTVGPG HAALQRQLPV TPDDPDGEGQ VVPNGL--DG EEEEDDDDYV 651 700 ENSTTRP00000003731/1-808 TLSDQDSLSG SSGRGPGPER PSVVSSSVSD ECSEVMERSA ALRSCHSEQV bmy_17033T0/1-826 TLSDQESLSG SSGRGPGPQR PSVAPSSMSD ECSEVTERSA TLRRCHSEQV BACU005260/1-786 TLSDQDSLSG SSGHGPGPWR PSVAPSSTLD ECSEVTERSA TLRRCRSEQV ENSP00000373647/1-823 TLSDQDSHSG SSGRGPGPRR PSVA-SSVSE EYFEVREHSV PLRRRHSEQV ENSBTAP00000004828/1-817 TLSDQDSLSG SSDHGPGPRR ASLASSSVSD EYFEVTDRSA CLRRRHSEQV 701 750 ENSTTRP00000003731/1-808 ANGSAQPPRQ RLSTPHMTRG TFGGPLGGSS WAQGQEREEA GAL-RMQAPH bmy_17033T0/1-826 ANGPAQPPCR QLSAPHMTCG TFGGPLGGSS WAQGQEREEA GTLRRMQAPH BACU005260/1-786 ANGPAQHPRR QLSAPHVTRG TFGGPPGDSS WAQGQEREEA GALRRMQAPH ENSP00000373647/1-823 ANGPTPPPRR QLSAPHITRG TFVGPQGGSP WAQSRGREEA DALKRMQAQR ENSBTAP00000004828/1-817 ANGPAQAPRR QLSAPHMTRG TCGGALGDSS WAQGQEREEA GAQRRMQAAR 751 800 ENSTTRP00000003731/1-808 LADKEAQXXX XXXXXXX--- --XXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17033T0/1-826 LADKEAQGQR FHHYGVP--- -RDKDGFPQP SRTLGPPRYR PAADGAQISS BACU005260/1-786 RADKEAQGQR FHHYGVP--- -RDKDGFPQP SRTLGPPRYR PAADGAQISS ENSP00000373647/1-823 STDKEAQGQQ FHHHRVPASG TRDKDGFP-- ----GPPRYR SAADSVQSST ENSBTAP00000004828/1-817 PVDQEAQGQR FHHYGAPASG TREKDGFPRP LRTLGPPQFR PTADSAQSSS 801 850 ENSTTRP00000003731/1-808 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXQ bmy_17033T0/1-826 RKAGPAVAGP QHRQAKGGPR PCALPGPGTP KLARNASPQA DGRATEEHPS BACU005260/1-786 RKAGPAVPGP QHRQAKGGPG PCARPGPGTP RLARNASPQA DGRATEEHPS ENSP00000373647/1-823 RNAGPAMAGP HHWQAKGGQV PRLLPDPGSP RLAQNARPMT DGRATEEHPS ENSBTAP00000004828/1-817 RKAGPAMAGP QHWQAKSGPG PRMLPGPGSP RPARNASALA NSRATEEHPS 851 900 ENSTTRP00000003731/1-808 PFG-PYSKLS QLKHLKARMG G-QWASSDSK RQAQAPRDCK DP bmy_17033T0/1-826 PLGIPYSKLS QSKHLKARMG GGQWASSDPK RQPQAPRDCK DP BACU005260/1-786 PLGIPYSKLS QSKHLKARMG GGQWASSDSK RQPQAPRDCK DP ENSP00000373647/1-823 PFGIPYSKLS QSKHLKARTG GSQWASSDSK RRAQAPRDRK DP ENSBTAP00000004828/1-817 PFGIPYSKLS QSKHLKARTG GSQWAPSDSK RRAHAPRDHK DP