KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:55 2014 Check: 00 .. Name: ENSP00000323811/1-578 Len: 1050 Check: 9186 Weight: 1.00 Name: ENSBTAP00000004843/1-581 Len: 1050 Check: 5753 Weight: 1.00 Name: BACU001550/1-581 Len: 1050 Check: 1216 Weight: 1.00 Name: bmy_17740T0/1-673 Len: 1050 Check: 1776 Weight: 1.00 Name: ENSTTRP00000013661/1-580 Len: 1050 Check: 5460 Weight: 1.00 // 1 50 ENSP00000323811/1-578 MPDSNFAERS ---EEQVSGA KVIAQALKTQ DVEYIFGIVG IPVTEIAIAA ENSBTAP00000004843/1-581 MSESNLAALS DGLEGQVSGA RVIAQALKTQ DVNYMFGIVG IPVTEIALAA BACU001550/1-581 MSESNLAERS DGPERLVSGA KVVAQALKTQ DVNYMFGIVG IPVTEIALAA bmy_17740T0/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013661/1-580 MSESNLAESS DGRETLVSGA KVVAQALKTQ DVNYMFGIVG IPVTEIALAA 51 100 ENSP00000323811/1-578 QQLGIKYIGM RNEQAACYAA SAIGYLTSRP GVCLVVSGPG LIHALGGMAN ENSBTAP00000004843/1-581 QEVGIRYIGM RNEQAACYAA SAVGYLTGRP GVCLVVSGPG LVHSLGGMAN BACU001550/1-581 QEVGIRYIGM RNEQAACYAA SAVGYLTGRP GVCLVVSGPG LIHALGGMAN bmy_17740T0/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013661/1-580 QEVGIRYIGM RNEQAACYAA SAVGYLTGRP GVCLVVSGPG LIHALGGMAN 101 150 ENSP00000323811/1-578 ANMNCWPLLV IGGSSERNQE TMGAFQEFPQ VEACRLYTKF SARPSSIEAI ENSBTAP00000004843/1-581 ANMNCWPLIV IGGSSERSQE TMGAFQEFPQ VEACRLYSKF SARPSSIEAI BACU001550/1-581 ANMNCWPLIV IGGSSERSQE TMGAFQEFPQ VEACRLYSKF SARPSSIEAI bmy_17740T0/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013661/1-580 ANMNCWPLIV IGGSSERSQE TMGAFQEFPQ VEACRLYSKF SARPSSIEAI 151 200 ENSP00000323811/1-578 PFVIEKAVRS SIYGRPGACY VDIPADFVNL QVNVNSIKYM ERCMSPPISM ENSBTAP00000004843/1-581 PSIIEKAVRS SIYGRPGACY VDIPADFVSL QVNVSSVKYV ECCMPPPISM BACU001550/1-581 PSIIEKAVRS SIYGRPGACY VDIPADFVNL QVNVDSIRYV ECCMPPPVSM bmy_17740T0/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013661/1-580 PSIIEKAVRS SIYGRPGACY VDIPADFVNL QVNVNSIRYM ECCMPPPVSM 201 250 ENSP00000323811/1-578 AETSAVCTAA SVIRNAKQPL LIIGKGAAYA HAEESIKKLV EQYKLPFLPT ENSBTAP00000004843/1-581 AETSAVRMAA SVIRNAKQPL VIIGKGAAYA HAEESIRKLV EQCKLPFLPT BACU001550/1-581 AESSAVCMAA SVIRNAKQPL LIIGKGAAYA RAEESIRKLV EQCKLPFLPT bmy_17740T0/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013661/1-580 AESSAVCMAA SVIRNAKQPL LIVGKXXXXX XXXXXXXXXX EQCKLPFLPT 251 300 ENSP00000323811/1-578 PMGKGVVPDN HPYCVGAARS RALQFADVIV LFGARLNWIL HFGLPPRYQP ENSBTAP00000004843/1-581 PMGKGVIRDN HPNCVAAARS RALQFADVIV LLGARLNWIL HFGLPPRYQP BACU001550/1-581 PMGKGVIPDN HPNCVGAARS RALQFADVIV LFGARLNWIL HFGLPPRYQP bmy_17740T0/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013661/1-580 PMGKGVI-DN HPNCVGAARS RALQFADVIV LLGARLNWIL HFGLPPRYQP 301 350 ENSP00000323811/1-578 DVKFIQVDIC AEELGNNVKP AVTLLGNIHA VTKQLLEELD KTPWQYPPES ENSBTAP00000004843/1-581 DVKFIQVDIC AEELGNNVRP AVTLLGDVNA VTKQLLEQFD KTPWQYPPES BACU001550/1-581 DVKFIQVDIC AEELGNNVRP AVTLLGDINA VTKQLLEQFE KTPWQYPPES bmy_17740T0/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013661/1-580 DVKFIQVDIC AEELGNNVRP AVTLLGDINA VTKQLLEQFD KTPWQYPPES 351 400 ENSP00000323811/1-578 KWWKTLREKM KSNEAASKEL ASKKSLPMNY YTVFYHVQEQ LPRDCFVVSE ENSBTAP00000004843/1-581 EWWKVLREKM KSNEALSKEL ASKKSLPMNY YTVFYHVQEQ LPRDCFVVSE BACU001550/1-581 KWWKILREKM KSNEALSKEL AFKKSLPMNY YTVFYHIQEQ LPRDCFVVSE bmy_17740T0/1-673 ---------- ---------- -------MNY YTVFYHIQEQ LPRDCFVVSE ENSTTRP00000013661/1-580 KWWKILREKM KSNEALSKEL AFKKSLPMNY YTVFYHIQEQ LPRDCFVVSE 401 450 ENSP00000323811/1-578 GANTMDIGRT VLQNYLPRHR LDAGTFGTMG VGLGFAIAAA VVAKDRSPGQ ENSBTAP00000004843/1-581 GANTMDIGRT VLQNYLPRHR LDAGTFGTMG VGLGFAIAAA IVAKDRNPGQ BACU001550/1-581 GANTMDIGRT VLQNYFPRHR LDAGTFGTMG VGLGFAIASA LVAKDRNPGQ bmy_17740T0/1-673 GANTMDIGRT VLQNYLPRHR LDAGTFGTMG VGLGFAIASA LVAKDRNPGQ ENSTTRP00000013661/1-580 GANTMDIGRT VLQNYLPRHR LDAGTFGTMG VGLGFAIASA LVAKDRNPGQ 451 500 ENSP00000323811/1-578 WIICVEGDSA FGFSGMEVET ICRYNLPIIL LVVNNNGIYQ GFDTDTWKEM ENSBTAP00000004843/1-581 RVICVEGDSA FGFSGMEVET ICRYNLPIVL LVVNNNGIYQ GFDTDSWKEM BACU001550/1-581 RVICVEGDSA FGFSGMEVET ICRYNLPIIL LVVNNNGIYQ GFDTDTWKEM bmy_17740T0/1-673 RVICVEGDSA FGFSGMEVET ICRYNLPIIL LVVNNNGIYQ GFDTDTWKEM ENSTTRP00000013661/1-580 QVICVEGDSA FGFSGMEVET ICRYNLPIIL LVVNNNGIYQ GFDTDTWKEM 501 550 ENSP00000323811/1-578 LKFQDATAVV PPMCLLPNSH YEQVMTAFGG KGYFVQTPEE LQKSLRQSLA ENSBTAP00000004843/1-581 LKFGDATTVA PPMCLLPHSH YEHVMTAFGG KGYFVQTPEE LQKSLRQSLA BACU001550/1-581 LKFGDATTVA PPMCLLPHSH YEHVMTAFGG KGYFVQTPEE LQKSLRQSLA bmy_17740T0/1-673 LKFGDATIVA PPMCLLPHSH YEHVMIAFGG KGYFVQTPEE LQKSLRQSLA ENSTTRP00000013661/1-580 LKFGDATTVA PPMCLLPHSH YEHVMIAFGG KGYFVQTPEE LQKSLRQSLA 551 600 ENSP00000323811/1-578 DTTKPSLINI MIEPQATRKA QDFH------ ---------- ---------- ENSBTAP00000004843/1-581 DTTNPSLINI MIEPQGTRKA QDFH------ ---------- ---------- BACU001550/1-581 DTTKPCLINI MIEPQAMRKA QDFH------ ---------- ---------- bmy_17740T0/1-673 DTTKPSLINI MIEPQAMRKA QLFFRFIVSQ PTFLTSVLPI SAALPGLDQK ENSTTRP00000013661/1-580 DTTKPSLINI MIEPQAMRKA QDFH------ ---------- ---------- 601 650 ENSP00000323811/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004843/1-581 ---------- ---------- ---------- ---------- ---------- BACU001550/1-581 ---------- ---------- ---------- ---------- ---------- bmy_17740T0/1-673 KRGGHRACCL LTPPPPPLFP PPFFRGGRSP LLSPDMKNLV LELETTRPPC ENSTTRP00000013661/1-580 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000323811/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004843/1-581 ---------- ---------- ---------- ---------- ---------- BACU001550/1-581 ---------- ---------- ---------- ---------- ---------- bmy_17740T0/1-673 VQGSLSSPRP PGPQVGASPR PYPTVLFSEE GCPLGRAAPF QGPPGLPGKT ENSTTRP00000013661/1-580 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000323811/1-578 ---------- ---------- ---------- -W-------- ---------- ENSBTAP00000004843/1-581 ---------- ---------- ---------- -W-------- ---------- BACU001550/1-581 ---------- ---------- ---------- -W-------- ---------- bmy_17740T0/1-673 GPKGEKGELG RPGRKGRPGP PGVPGMPGPV GWPGPEGPRG EKGDLGMMGL ENSTTRP00000013661/1-580 ---------- ---------- ---------- -W-------- ---------- 751 800 ENSP00000323811/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004843/1-581 ---------- ---------- ---------- ---------- ---------- BACU001550/1-581 ---------- ---------- ---------- ---------- ---------- bmy_17740T0/1-673 PGSRGPMGSK GYPGSRGEKG SRGERGDLGP KGEKGFPGLP GMLGQKGEMG ENSTTRP00000013661/1-580 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000323811/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004843/1-581 ---------- ---------- ---------- ---------- ---------- BACU001550/1-581 ---------- ---------- ---------- ---------- ---------- bmy_17740T0/1-673 PKGEPGIAGH RGPTGRPGKR GKQGQKGDSG VMGPPGKPGP SGQPGRPGAP ENSTTRP00000013661/1-580 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000323811/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004843/1-581 ---------- ---------- ---------- ---------- ---------- BACU001550/1-581 ---------- ---------- ---------- ---------- ---------- bmy_17740T0/1-673 GPPGPSSAVT AVCCFLGHLV MGPKGERGFP GPPGRCLCGP PMNVNNPSYG ENSTTRP00000013661/1-580 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000323811/1-578 ---------- ---------- --LTRSNM-- ---------- ---------- ENSBTAP00000004843/1-581 ---------- ---------- --LTRSNL-- ---------- ---------- BACU001550/1-581 ---------- ---------- --LTRSNM-- ---------- ---------- bmy_17740T0/1-673 ESAYGPSSPR VPVIFVVNNQ EELERLNTQN AIAFRRDQRS LYFKDSLGWL ENSTTRP00000013661/1-580 ---------- ---------- --LTRSNM-- ---------- ---------- 951 1000 ENSP00000323811/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004843/1-581 ---------- ---------- ---------- ---------- ---------- BACU001550/1-581 ---------- ---------- ---------- ---------- ---------- bmy_17740T0/1-673 PIQLTSFYPV DYPVDHRGSC GDGVLQPGEE CDDGNGDVGD DCIRCRRAYC ENSTTRP00000013661/1-580 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000323811/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004843/1-581 ---------- ---------- ---------- ---------- ---------- BACU001550/1-581 ---------- ---------- ---------- ---------- ---------- bmy_17740T0/1-673 GDGHRHRGVE DCDGSDFGHL TCETYLPGSY GDLRCTPYCY IDSTPCRYFT ENSTTRP00000013661/1-580 ---------- ---------- ---------- ---------- ----------