KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:57 2014 Check: 00 .. Name: ENSP00000354568/1-947 Len: 978 Check: 2682 Weight: 1.00 Name: ENSTTRP00000013635/1-950 Len: 978 Check: 6974 Weight: 1.00 Name: ENSBTAP00000004850/1-629 Len: 978 Check: 7777 Weight: 1.00 Name: bmy_09084T0/1-641 Len: 978 Check: 5433 Weight: 1.00 Name: BACU020203/1-911 Len: 978 Check: 162 Weight: 1.00 // 1 50 ENSP00000354568/1-947 ---------- --MSLPSRQT AIIVNPPPPE YINTKKNGRL TNQLQYLQKV ENSTTRP00000013635/1-950 AYTYRQDLKQ LRMSLPSRQT A-IVNPPPPA YINTKKNGRL TNQLQYLQKV ENSBTAP00000004850/1-629 ---------Q LRMSLPSRQT A-IVNPPPPE YINTKKNGRL TNQLQYLQKV bmy_09084T0/1-641 ---------- --MSLPSRQT A-IVNPPPPA YINTKKNGRW TNQLQYLQKV BACU020203/1-911 -----KDLKQ LRMSLPSRQT A-IVNPPPPA YINTKKNGRW TNQLQYLQKV 51 100 ENSP00000354568/1-947 VLKDLWKHSF SWPFQRPVDA VKLQLPDYYT IIKNPMDLNT IKKRLENKYY ENSTTRP00000013635/1-950 VLKALWKHSF SWPFQQPVDA VKLKLPXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000004850/1-629 VLKALWKHSF SWPFQQPVDA VKLKLPDYYT IIKNPMDLNT IKKRLEHKYY bmy_09084T0/1-641 VLKALRKHSF SWPFQQPVDA VKLKLPDYYT IIKNPMDLNT IKNRLEHKYY BACU020203/1-911 VLKALRKHNF SWPFQQPVDA VKLKLPDYYT IIKSPMDLNT IKNRLEHKYY 101 150 ENSP00000354568/1-947 AKASECIEDF NTMFSNCYLY NKPGDDIVLM AQALEKLFMQ KLSQMPQEEQ ENSTTRP00000013635/1-950 XXXXXXXXXX XXXXXXXXXX XXPGDDIVLM AQALEKLFRQ KLSQMPQEEQ ENSBTAP00000004850/1-629 VKASECIEDF NTMFSNCYLY NKPGDDIVLM AQALEKLFRQ KLSQMPQEEQ bmy_09084T0/1-641 VKASECIEDF NTMFSNCYLY NKPGDDIVLM AQALEKLFKQ KLSQMPQEEQ BACU020203/1-911 VKASECIEDF NTMFSNCYLY NKPGDDIVLM AQALEKLFKQ KLSQMPQEEQ 151 200 ENSP00000354568/1-947 VVGVKERIKK GTQQNIAVSS AKEKSSPSAT EKVFKQQEIP SVFPKTSISP ENSTTRP00000013635/1-950 VVGGKERIKK DTQQNAAV-S VKEKQSLKAL EKIIKQQAIP SVFPETSISP ENSBTAP00000004850/1-629 VVG------- -------V-S IKGKQSPKAL GKLLTQQVIP SVFPETSVSP bmy_09084T0/1-641 VVGGKERIKK DTQENVAI-S VKEKQSLKAL EKILKQQAIP SVFPETFISP BACU020203/1-911 VVGGKERIKK DTQQNVAI-S VKEKQSLKAL EKILKQQAIP SVFPETFISP 201 250 ENSP00000354568/1-947 LNVVQGASVN SSSQTAAQ-- ---------- ----VTKGVK RKADTTTPAT ENSTTRP00000013635/1-950 SNMAQSAPLN SASQTGTQ-- ---------- ----VTKGMK RKAD-TIPTA ENSBTAP00000004850/1-629 SNLAQGAPLN TVSQTVTQVY SITMTFPHLS LVSKVTKGVK RKADTTTPTT bmy_09084T0/1-641 SNMAQGAPLN SASQTGTQ-- ---------- -------DVK RKADATTPTA BACU020203/1-911 SNMAQSALLN SASQTGTQ-- ---------- -------DVK RKADTTTPTA 251 300 ENSP00000354568/1-947 SAVKASSEFS PTFTE-KSVA LPPIKENMPK NVLPDSQQQY NVVKTVKVTE ENSTTRP00000013635/1-950 SVVKASGESS PALTEKKSGK MPPIKENVLT NVLTDSQQQY KVVKNVQVTE ENSBTAP00000004850/1-629 SGVKASGESS PTLTEKKSGK MPLIKENMLK NVLPDSQQQY KVVKNAKVTE bmy_09084T0/1-641 SVVKASGESS PTLTEKKSGK MPPIKENVLT NVLTDSQQQY KVVKNVKVTE BACU020203/1-911 SVVKASGESS PTLTEKKSGK MPPIKENVLT NVLTDSQQQY KVVKNVKVTE 301 350 ENSP00000354568/1-947 QLRHCSEILK EMLAKKHFSY AWPFYNPVDV NALGLHNYYD VVKNPMDLGT ENSTTRP00000013635/1-950 QLRHCNEILK EMLAKKHLSY AWPFYNPVDI NALGLHNYND IVKNPMDLGT ENSBTAP00000004850/1-629 QLRHCSEILK EMLGKKHLSY AWPFYNPVDV NALGLHNYYD IVKTPMDLGT bmy_09084T0/1-641 QLRHCNEILK EMLAKKHLSY AWPFYNPVDV NALGLHNYYD I--------- BACU020203/1-911 QLRHCNEILK EMLAKKHLSY AWPFYNPVDV NALGLHNYYD IVKNPMDLGT 351 400 ENSP00000354568/1-947 IKEKMDNQEY KDAYKFAADV RLMFMNCYKY NPPDHEVVTM ARMLQDVFET ENSTTRP00000013635/1-950 IKAKMDNQEY KHAYEFAADV RLMFMNCYQY SPPDHEVVTM ARMLQDVFEM ENSBTAP00000004850/1-629 IKAKMDNQEY KDAYEFAADV RLMFMNCYKY NPPDHEVVTM ARMLQDVFEM bmy_09084T0/1-641 --AKMDNQEY KNAYEFAADV RLMFMNCYKY NPPDHEVVTM ARMLQEVFEM BACU020203/1-911 IKAKMDNQEY KNAYEFAADV RLMFMNCYKY NPPDHEVVTM ARMLQEVFEM 401 450 ENSP00000354568/1-947 HFSKIPIEPV ESMPLCYIKT DITETTGREN TNEASSEGNS SDDSEDERVK ENSTTRP00000013635/1-950 HFAKIPDEPV ESMPVCYIKT DTTETLGRER SSEASSADDS SSDSEDEQAQ ENSBTAP00000004850/1-629 HFAKIPDEPV ESMPVCYVKT DTTKTLGRES SSEASSEDNS SGDSEDERVQ bmy_09084T0/1-641 HFAKIPDEPV ESMPVCYIKT DTTETLGRER SSEASSADNC SGDSEDEQAQ BACU020203/1-911 HFAKIPDEPV ESMPVCYIKT DTTETLGRER SSEASSADNY SGDSEDEQAQ 451 500 ENSP00000354568/1-947 RLAKLQEQLK AVHQQLQVLS QVPFRKLNKK KEKSKKEKKK EKVNNSNENP ENSTTRP00000013635/1-950 SLEKLQEQLK AVHQQLPVLS QVPFNKRKRK NEKSKREKKK EKIDNRGENP ENSBTAP00000004850/1-629 RLAKLQEQLQ AVHQQLQVLS QVPFRKLKRK NEKSKREKKK EKIDNRDENP bmy_09084T0/1-641 SLEKLQEQLK AVHQQLQVLS QVPFNKLKRK NEKSKREKKK EKIDNRDENP BACU020203/1-911 SLEKLQEQLK AVHQQLQVLS QVPFDKLKRK NEKSKREKKK EKIDNRDENP 501 550 ENSP00000354568/1-947 RKMCEQMRLK EKSKRNQPKK RKQQFIGLKS EDEDNAKPMN YDEKRQLSLN ENSTTRP00000013635/1-950 RKKFKQIKLK EKSKCNQPKK GKQQVFAVKS EDKDNAKPMN YDEKRQLSLD ENSBTAP00000004850/1-629 RKKFKQMKLK EKSKRNLPKK KKPQVFTMKS EDEDNAKPMN YDEKRQLSLD bmy_09084T0/1-641 RKKFKQI--K EKSKRNQPKK GKQQVFAAKS EDKDNAKPMN YDEKRQLSLD BACU020203/1-911 RKKFKQI--K EKSKCNQPKK GKQQVFTAKS EDKDNAKPMN YDEKRQLSLD 551 600 ENSP00000354568/1-947 INKLPGDKLG RVVHIIQSRE PSLSNSNPDE IEIDFETLKA STLRELEKYV ENSTTRP00000013635/1-950 INKLPGDKLG HVVHIILCRE PSLRNSSPNE IDIDFETLTA STLRELEKYV ENSBTAP00000004850/1-629 INKLPGDKLG RVVHIIQSRE PSLRNSNPDE IEIDFETLKS STLRELQKYV bmy_09084T0/1-641 INKLPGDKLG RVLHIIQSRE ASLRNSNPDE IEIDFETLKA STLRELEKYV BACU020203/1-911 INKLPGDKLG QVLHIIQSRE PSLRNSNPDE IEIDFETLKA STLRELEKYV 601 650 ENSP00000354568/1-947 SACLRKRPLK PPAKKIMMSK EELHSQKKQE LEKRLLDVNN QLNSRKRQTK ENSTTRP00000013635/1-950 AACLRKRPVK PHGKRIMKSK EELHSQKRQE LEKQLQDVSN QLNSRKHQTK ENSBTAP00000004850/1-629 AGCLRKRSLK PNA------- ---------- ---------- ---------- bmy_09084T0/1-641 AACLRKRPLK FHGKRIMKSK EELHSQKKQE LEKRLQDVNN QLNSRKHQTK BACU020203/1-911 AACLRKRPLK FHGKRIMKSK EELHSQKKQE LEKRLQDI-N QLNSRKHQTK 651 700 ENSP00000354568/1-947 SDKTQPSKAV ENVSRLSE-- SSSSSSSSSE SESSSSDLSS SDSSDSESEM ENSTTRP00000013635/1-950 PEKTQSSKAI GSGSRLSESS SSSSSSSSSE SESSSRDSSS SDSSDSESEM ENSBTAP00000004850/1-629 -EKTQSSKAI GSGSRLSESS SSSSSSSSSE SESSSSDSSS SD-------- bmy_09084T0/1-641 LKAAAVAAAV AH-------- ---------- ---------- ---------- BACU020203/1-911 PEKTQLSKAI GSGSRLSESS SSSSSSSSSE SESSSSDSSS SDSSDSESEM 701 750 ENSP00000354568/1-947 FPKFTEVKPN DSPSKENVKK MKNECIPPEG RTGVTQIGYC VQDTTSANTT ENSTTRP00000013635/1-950 FPKFTGVEQN DSSSKEKVKK IKEEYILPE- ------IQSS VQYTASGKTS ENSBTAP00000004850/1-629 ---------- ---------- ---------- ---------- ---------- bmy_09084T0/1-641 ---------- ---------- ---------- ---------- ---------- BACU020203/1-911 FPKFTGVKQN DSPSKEKVKQ ---------- ------IQSS VQDTNSRKTS 751 800 ENSP00000354568/1-947 LVHQTTPSHV MPPNHHQLAF NYQELEHLQT VKNISPLQIL PPSGDSEQLS ENSTTRP00000013635/1-950 LVHQTTCSGG TPPNPYQLVF NYQESECLQS VENISPLQIL PLSDNPEQHL ENSBTAP00000004850/1-629 ---------- ---------- ---------- ---------- ---------- bmy_09084T0/1-641 ---------- ---------- --------QS LKVVAVIQVL QTAVIPNQ-- BACU020203/1-911 LVHQTTCSGG TPPNHHQLVF NHQESERLQS VENISPLQIL PLSDDPEQRL 801 850 ENSP00000354568/1-947 NGITVMHPSG DSDTTMLESE CQAPVQKDIK IKNADSWKSL GKPVKPSGVM ENSTTRP00000013635/1-950 NGLPVMHQSG DNDTVVLESE CQVPVQKDIK IKNADSWKSL GKPVKTSGVV ENSBTAP00000004850/1-629 ---------- ---------- ---------- ---------- ---------- bmy_09084T0/1-641 ---------- ---------- ---------- ---------- ---------- BACU020203/1-911 NGLTVMHQSG DNDTVVLESE CQVPVQKDIK IKNADSWKSL GKPVKTSGVV 851 900 ENSP00000354568/1-947 KSSDELFNQF RKAAIEKEVK ARTQELIRKH LEQNTKELKA SQENQRDLGN ENSTTRP00000013635/1-950 KSSDELFNQF RKAAIEKEVR ARTQELIQKH LEQNTKEPKV FQGNQRD--H ENSBTAP00000004850/1-629 ---------- ---------- ---------- ---------- ---------- bmy_09084T0/1-641 ---------- ---------- ------IIVH L--------- ---------- BACU020203/1-911 KSSDELFNQF RKAAIEKEVR ARTQELIQKH LEQNTKEPKV FQENQRD--H 901 950 ENSP00000354568/1-947 GLTVESFSNK IQNKCSGEEQ KEHQQSSEAQ DKSKLWLLKD RDLARQKEQE ENSTTRP00000013635/1-950 GFTLESFPNK MQNKCLGEEQ KEHQQSLEAQ DGGKLWLLKD RNLAREKEQE ENSBTAP00000004850/1-629 ---------- ---------- ---------- ---------- ---------- bmy_09084T0/1-641 ---------- ---------- ---------- ---------- ---------- BACU020203/1-911 GFTLESFPNK MQNKCLGEEQ KEHQQSLEAQ DGGKLWLLKD RNLARAKEQE 951 1000 ENSP00000354568/1-947 RRRREAMVGT IDMTLQSDIM TMFENNFD ENSTTRP00000013635/1-950 RRRREAMAGT IDMTLQSDIM TMFENNFD ENSBTAP00000004850/1-629 ---------- ---------- -------- bmy_09084T0/1-641 ---------- ---------- -------- BACU020203/1-911 RRRREAVS-- ---------- --------