KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:00 2014 Check: 00 .. Name: ENSTTRP00000004552/1-542 Len: 652 Check: 9371 Weight: 1.00 Name: BACU016429/1-481 Len: 652 Check: 6801 Weight: 1.00 Name: bmy_07956T0/1-463 Len: 652 Check: 2901 Weight: 1.00 Name: ENSP00000229195/1-540 Len: 652 Check: 7955 Weight: 1.00 Name: ENSBTAP00000004880/1-540 Len: 652 Check: 7479 Weight: 1.00 // 1 50 ENSTTRP00000004552/1-542 MVRTDGHTLS EKRNYQVTNS MFGASRKKFV EGVDSDYHDE NMYYSQSSMF BACU016429/1-481 ---------- ---------- MFGASRKKFV EGVDSDYHDE NMYYSQSSMF bmy_07956T0/1-463 ---------- ---------- -------MYV ------YNDE DV-------- ENSP00000229195/1-540 MVRTDGHTLS EKRNYQVTNS MFGASRKKFV EGVDSDYHDE NMYYSQSSMF ENSBTAP00000004880/1-540 RIYLFIVYQM DVKFDEVTNS MFGASRKKFV EGVDSDYHDE NMYYSQSSMF 51 100 ENSTTRP00000004552/1-542 PHRSEKD--- ---------- ---------- ---------- ---------- BACU016429/1-481 PHRSEKDVEE EEYKVYVGDS QSCSTDGVPP AVKIQPDVWD SQLVLTQQQL bmy_07956T0/1-463 ---------- ---------- ---------- ---------- ---------- ENSP00000229195/1-540 PHRSEKD--- ---------- ---------- ---------- ---------- ENSBTAP00000004880/1-540 PHRSEKD--- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000004552/1-542 ---------- ---MLAS--- ---------- ---------- -------PST BACU016429/1-481 LIVEDFEARL APSMLVSYIL TTQKKGLFEE PKGAIFWNMY IYNDEDVESE bmy_07956T0/1-463 ---------- ---------- ---------- ---------- -------ESE ENSP00000229195/1-540 ---------- ---MLAS--- ---------- ---------- -------PST ENSBTAP00000004880/1-540 ---------- ---MLAS--- ---------- ---------- -------PST 151 200 ENSTTRP00000004552/1-542 SGQLSQFGA- -SLYGQQSAL GLPMRGMSNN TPQLNRSLSQ GTQLPSHVTP BACU016429/1-481 MGRKSKCGGK ENLTG---AL GLPMRGMSNN TPQLNRSLSQ GTQLPSHVTP bmy_07956T0/1-463 MGRKSKCGGK ENLTAISGAL GLPMRGMSNN TPQLNRSLSQ GTQLPSHVTP ENSP00000229195/1-540 SGQLSQFGA- -SLYGQQSAL GLPMRGMSNN TPQLNRSLSQ GTQLPSHVTP ENSBTAP00000004880/1-540 SGQLSQFGA- -SLYGQQSAL GLPMRGMSNN TPQLNRSLSQ GTQLPSHVTP 201 250 ENSTTRP00000004552/1-542 TTGVPTMSLH TPPSPSRGIL PMNPRNMMNH SQVGQGIGIP SRTNSMSSSG BACU016429/1-481 TTGVPTMSLH TPPSPSRGIL PMNPRNMMNH SQVGQGIGIP SRTNSMSSSG bmy_07956T0/1-463 TTGVPTMSLH TPPSPSRGIL PMNPRNMMNH SQVGQGIGIP SRTNSMSSSG ENSP00000229195/1-540 TTGVPTMSLH TPPSPSRGIL PMNPRNMMNH SQVGQGIGIP SRTNSMSSSG ENSBTAP00000004880/1-540 TTGVPTMSLH TPPSPSRGIL PMNPRNMMNH SQVGQGIGIP SRTNSMSSSG 251 300 ENSTTRP00000004552/1-542 LGSPNRSSPS IICMPKQQPS RQPFTVN--- ---------- ---------S BACU016429/1-481 LGSPNRSSPS IICMPKQQPS RQPFTVN--- ---------- ---------S bmy_07956T0/1-463 LGSPNRSSPS IICMPKQQPS RQPFTVNRLV QKREALCSYC ISKIIFYVPS ENSP00000229195/1-540 LGSPNRSSPS IICMPKQQPS RQPFTVN--- ---------- ---------S ENSBTAP00000004880/1-540 LGSPNRSSPS IICMPKQQPS RQPFTVN--- ---------- ---------S 301 350 ENSTTRP00000004552/1-542 MSGFGMNRNQ AFGMNNSLSS NIFNGTDGSE NVTGLDLSDF PALADRNRRE BACU016429/1-481 MSGFGMNRNQ AFGMNNSLSS NIFNGT---- ---------- ---------- bmy_07956T0/1-463 MSGFGMNRNQ AFGMNNSLSS NIFNGTDGSE NVTGLDLSDF PALADRNRRE ENSP00000229195/1-540 MSGFGMNRNQ AFGMNNSLSS NIFNGTDGSE NVTGLDLSDF PALADRNRRE ENSBTAP00000004880/1-540 MSGFGMNRNQ AFGMNNSLSS NIFNGTDGSE NVTGLDLSDF PALADRNRRE 351 400 ENSTTRP00000004552/1-542 GSGNPTPLIN PLAGRAPYVG MVTKPANEQS QDFSIHNEDF PALPGSSYKD BACU016429/1-481 ---------- --------VG MVTKPANEQS QDFSIHNEDF PALPGSSYKD bmy_07956T0/1-463 GS-------- --------VG MVTKPANEQS QDFSIHNEDF PALPGSSYKD ENSP00000229195/1-540 GSGNPTPLIN PLAGRAPYVG MVTKPANEQS QDFSIHNEDF PALPGSSYKD ENSBTAP00000004880/1-540 GSGNPTPLIN PLAGRAPYVG MVTKPANEQS QDFSIHNEDF PALPGSSYKD 401 450 ENSTTRP00000004552/1-542 PTSSNDDSKS XXXXXXXXXX XXXXXXXXXX XXXSFTTQNN NQQKKGIQVL BACU016429/1-481 PTSSNDDSKS --NLNTSGKT TSSTDGPKFP GDKSSTTQNN NQQKKGIQVL bmy_07956T0/1-463 PTSSNDDSKS --NLNTSGKT TSSTDGPKFP GDKSSTTQNN NQQKKGIQVL ENSP00000229195/1-540 PTSSNDDSKS --NLNTSGKT TSSTDGPKFP GDKSSTTQNN NQQKKGIQVL ENSBTAP00000004880/1-540 PTSSNDDSKS --NLNTSGKT TSSTDGPKFP GDKSSTTQNN NQQKKGIQVL 451 500 ENSTTRP00000004552/1-542 PDGRVTNIPQ GMVTDQFGMI GLLTFIRAAE TDPGMVHLAL GSDLTTLGLN BACU016429/1-481 PDGRVTNIPQ GMVTDQFGMI GLLTFIRAAE TDPGMVHLAL GSDLTTLGLN bmy_07956T0/1-463 PDGRVTNIPQ GMVTDQFGMI GL-------- ---------- ---------- ENSP00000229195/1-540 PDGRVTNIPQ GMVTDQFGMI GLLTFIRAAE TDPGMVHLAL GSDLTTLGLN ENSBTAP00000004880/1-540 PDGRVTNIPQ GMVTDQFGMI GLLTFIRAAE TDPGMVHLAL GSDLTTLGLN 501 550 ENSTTRP00000004552/1-542 LNSPENLYPK FASPWASSPC RPQDIDFHVP SEYLTNIHIR DKLAAIKLGR BACU016429/1-481 LNSPENLYPK FASPWASSPC RPQDIDFHVP SEYLTNIHIR D--------- bmy_07956T0/1-463 -----NLYPK FASPWASSPC RPQDIDFHVP SEYLTNIHIR DKLAAIKLGR ENSP00000229195/1-540 LNSPENLYPK FASPWASSPC RPQDIDFHVP SEYLTNIHIR DKLAAIKLGR ENSBTAP00000004880/1-540 LNSPENLYPK FASPWASSPC RPQDIDFHVP SEYLTNIHIR DKLAAIKLGR 551 600 ENSTTRP00000004552/1-542 YGEDLLFYLY YMNGGDVLQL LAAVELFNRD WRYHKEERVW ITRAPGMEPT BACU016429/1-481 ---------- ---------- ---------- ---------- ---------- bmy_07956T0/1-463 YGEDLLFYLY YMNGGDVLQL LAAVELFNXD WRYHKEERVW ITRAPGMEPT ENSP00000229195/1-540 YGEDLLFYLY YMNGGDVLQL LAAVELFNRD WRYHKEERVW ITRAPGMEPT ENSBTAP00000004880/1-540 YGEDLLFYLY YMNGGDVLQL LAAVELFNRD WRYHKEERVW ITRAPGMEPT 601 650 ENSTTRP00000004552/1-542 MKTNTYERGT YYFFDCLNWR KVAKEFHLEY DKLEERPHLP STFNYNPAQQ BACU016429/1-481 ---------- ---------- ---KEFHLEY DKLEERPHLP STFNYNPAQQ bmy_07956T0/1-463 MKTNTYERGT YYFFDCLNWR KVAKEFHLEY DKLEERPHLP STFNYNPAQQ ENSP00000229195/1-540 MKTNTYERGT YYFFDCLNWR KVAKEFHLEY DKLEERPHLP STFNYNPAQQ ENSBTAP00000004880/1-540 MKTNTYERGT YYFFDCLNWR KVAKEFHLEY DKLEERPHLP STFNYNPAQQ 651 700 ENSTTRP00000004552/1-542 AF BACU016429/1-481 AF bmy_07956T0/1-463 AF ENSP00000229195/1-540 AF ENSBTAP00000004880/1-540 AF