KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:25:09 2014 Check: 00 .. Name: bmy_01547T0/1-345 Len: 590 Check: 1189 Weight: 1.00 Name: ENSTTRP00000004575/1-589 Len: 590 Check: 2006 Weight: 1.00 Name: ENSP00000354458/1-584 Len: 590 Check: 8134 Weight: 1.00 Name: ENSBTAP00000004913/1-589 Len: 590 Check: 6145 Weight: 1.00 // 1 50 bmy_01547T0/1-345 ---------- MVLIDP---- ---------- ---------- ---------- ENSTTRP00000004575/1-589 MFAVAFFLLS LMTCQPGVAI QEKVNWRVSR AVQSSTPTAV SCQLGNWGEW ENSP00000354458/1-584 MFAVVFFILS LMTCQPGVTA QEKVNQRVRR AA---TPAAV TCQLSNWSEW ENSBTAP00000004913/1-589 MFAAAFFLLF LMTYQPGVTI QEKVNWRVSR AVQSFTPTAV SCQLDNWAEW 51 100 bmy_01547T0/1-345 ----PC---- ---------- ---------- ---------- ---------- ENSTTRP00000004575/1-589 TDCFPCQEKK YRYRSLLQPN KFGGTICSGT VWDQASCHSP TACVKQAQCG ENSP00000354458/1-584 TDCFPCQDKK YRHRSLLQPN KFGGTICSGD IWDQASCSSS TTCVRQAQCG ENSBTAP00000004913/1-589 TDCFPCQDKK YRYRSLLQPN KFGGTICSGN VWDQASCHSP TACLSQAQCG 101 150 bmy_01547T0/1-345 ---------R CLKRHLVCNG DKDCLDGSDE DNCEDVRVLE DDCSQYDPIP ENSTTRP00000004575/1-589 QDFQCKETGR CLKRHLVCNG ENDCLDGSDE DNCEDIRVLE DDCSQYDPIP ENSP00000354458/1-584 QDFQCKETGR CLKRHLVCNG DQDCLDGSDE DDCEDVRAID EDCSQYEPIP ENSBTAP00000004913/1-589 QDFQCKETGR CLKRHLVCNG DKDCLDGSDE DDCEDVRILE NDCSQYDPIP 151 200 bmy_01547T0/1-345 GSERVTSGYN FLTQKEAQSV YDVRYYGGQC ETVYNGEWRE LRYDSTCERL ENSTTRP00000004575/1-589 GSERVASGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000354458/1-584 GSQKAALGYN ILTQEDAQSV YDASYYGGQC ETVYNGEWRE LRYDSTCERL ENSBTAP00000004913/1-589 GSEKAALGYN ILTQEEAQHV YDARYYGGQC ETVYNGEWRE LQYDPACERL 201 250 bmy_01547T0/1-345 YYGDDEKYFR KPYNFLKYHF EALADTTISS ESYDDANDLF SKVKNDKSVS ENSTTRP00000004575/1-589 XXXXXXXXXX XXXXXXXXXX XALADTTVSS ESYDDANHLY SKVKNDNFVS ENSP00000354458/1-584 YYGDDEKYFR KPYNFLKYHF EALADTGISS EFYDNANDLL SKVKKDKSDS ENSBTAP00000004913/1-589 YYGDDDKYFR KPYNFLKYHF EAQADTKISS EIYNDANDLL TKVKNDKSVS 251 300 bmy_01547T0/1-345 AGVTIGVSPT GSPFTATAGV SGSRDSSFLN KLSKYNQKKY GFIRIFTKVQ ENSTTRP00000004575/1-589 AGVTIGVGPV CSPFTVTAGV SGSRGSSVLN MLSKYNQKKY TFMRIFTKVQ ENSP00000354458/1-584 FGVTIGIGPA GSPLLVGVGV SHSQDTSFLN ELNKYNEKKF IFTRIFTKVQ ENSBTAP00000004913/1-589 SGLTIGVGIR GVPVTVTAGV SMSKDAAFLK KLSKYHEKKY SFMRIFTKVQ 301 350 bmy_01547T0/1-345 TAHFKMRREN IMLDEVMLQS LMELPEQYNY GMYAKFIDDY GTHYITSGTM ENSTTRP00000004575/1-589 TAHFKMRREN IMLDEVMLQS LLELPEQYHY GMYAKFIDDY GTHYITSGTM ENSP00000354458/1-584 TAHFKMRKDD IMLDEGMLQS LMELPDQYNY GMYAKFINDY GTHYITSGSM ENSBTAP00000004913/1-589 TAHFKMRREN IVLDEGMLQS LMELPERYHY GMYAKFINDY GTHYITSGSM 351 400 bmy_01547T0/1-345 GGIYEYILVL NKERMETA-- ---------- ---------- DKM------- ENSTTRP00000004575/1-589 GGIYEYILVL NKERMETVGV SSNDIQTCFG GSFGIDYEYT DTTQIGGRLS ENSP00000354458/1-584 GGIYEYILVI DKAKMESLGI TSRDITTCFG GSLGIQYE-- DKINVGGGLS ENSBTAP00000004913/1-589 GGVYEYILVL NREKMETAGV TSAEIQKCFG VSLGIEYEYS EAIQIKGSSS 401 450 bmy_01547T0/1-345 ---------- ---------- ---LLPQ--- ---------- REHETIHQKS ENSTTRP00000004575/1-589 GEDCKKFGGG KIDDYNKTVG VEDIIPLVQG GSPGWAGGLT QDRSIITYRS ENSP00000354458/1-584 GDHCKKFGGG KTERARKAMA VEDIISRVRG GSSGWSGGLA QNRSTITYRS ENSBTAP00000004913/1-589 LGPCKKSGDG KLTENEKAMG VEDFISRVRG GSSGWGGSLT QDSSLVTYRS 451 500 bmy_01547T0/1-345 -GDVLDVGEV MLDFS----- --------GT LDFPQGLLLT AF--YLLQES ENSTTRP00000004575/1-589 WGRSLKYNPV VIDFELQPIH EIVRHTNLGP LETKRQNLRR ALDQYLMEFN ENSP00000354458/1-584 WGRSLKYNPV VIDFEMQPIH EVLRHTSLGP LEAKRQNLRR ALDQYLMEFN ENSBTAP00000004913/1-589 WGRSLKYNPA VIDFEMKPIH EILQHTNLGS LETKRQNLRR ALDKYLMEFN 501 550 bmy_01547T0/1-345 TPE---TFTR DLLKLVGVGA CLVENAAGAL ---------- ---------- ENSTTRP00000004575/1-589 ACRCGPCFNN GKPILDGT-S CTCQCPLGRQ GLACEQMESE GEKADGHWGC ENSP00000354458/1-584 ACRCGPCFNN GVPILEGT-S CRCQCRLGSL GAACEQTQTE GAKADGSWSC ENSBTAP00000004913/1-589 ACRCGPCFNN GEPILEGT-S CKCQCPVGHQ GLACEQMQSE GAQADGRWSC 551 600 bmy_01547T0/1-345 ---------- ---------- ---------- ---------- ENSTTRP00000004575/1-589 WSSWSACKSG TRERRRECNN PAPQNGGTSC PGHRVQTQAC ENSP00000354458/1-584 WSSWSVCRAG IQERRRECDN PAPQNGGASC PGRKVQTQAC ENSBTAP00000004913/1-589 WSSWSACRSG TQERRRECNN PAPQNGGASC PGHRVQTQAC