KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:10 2014 Check: 00 .. Name: ENSTTRP00000007671/1-1137 Len: 1182 Check: 912 Weight: 1.00 Name: ENSP00000361554/1-1138 Len: 1182 Check: 8331 Weight: 1.00 Name: ENSBTAP00000004917/1-1139 Len: 1182 Check: 1715 Weight: 1.00 Name: BACU000360/1-1059 Len: 1182 Check: 991 Weight: 1.00 Name: bmy_16617T0/1-1031 Len: 1182 Check: 4038 Weight: 1.00 // 1 50 ENSTTRP00000007671/1-1137 MVWLGPPLLL PIFFLASHVX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000361554/1-1138 MVWRVPPFLL PILFLASHVG AAVDLTLLAN LRLTDPQRFF LTCVSGEAGA ENSBTAP00000004917/1-1139 MVWLEPPLLL PIFFLASHVG AAVDLTLLAD LRLTEPQRFF LTCVSGEAGA BACU000360/1-1059 MVWL------ ---------- ---------- ---------- ---------- bmy_16617T0/1-1031 -AW------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000007671/1-1137 XXXXXX-XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000361554/1-1138 GRGSDAWGPP LLLEKDDRIV RTP-PGPPLR LARNGSHQVT LRGFSKPSDL ENSBTAP00000004917/1-1139 GRGSDAWGPP LLLEKDDRIV RTPRPWQPPH IARNGSSRVT VRGFSQPSDL BACU000360/1-1059 -------GPP LLL------- --PIFFLASH VA-------- ---------- bmy_16617T0/1-1031 -------GPP LLLEKDDRIV RTPRPWQPLH LARNGSRQVT LRGFSQPSDL 101 150 ENSTTRP00000007671/1-1137 XXXXXXXXXX GARRTRVLYP HNSPGAHLLP DKVTHTVNKG DTAVLSAWVR ENSP00000361554/1-1138 VGVFSCVGGA GARRTRVIYV HNSPGAHLLP DKVTHTVNKG DTAVLSARVH ENSBTAP00000004917/1-1139 VGVFSCVGGA GTRRTRVLYV HNSPGAHLLP DKVTHTVNKG DTAVLSARVR BACU000360/1-1059 ---------- ---------- ------HLLP DKVTHTVNKG DTAVLSAWVR bmy_16617T0/1-1031 VGVFSCVGGA GARRTRVLYV HNSPGAHLLP DKVTHTVNKG DTAVLSAWVR 151 200 ENSTTRP00000007671/1-1137 KEKQTDVIWK SNGSYFYTLD WHEAQEGRFL LQLPNVQPSS SGIYSATYLE ENSP00000361554/1-1138 KEKQTDVIWK SNGSYFYTLD WHEAQDGRFL LQLPNVQPPS SGIYSATYLE ENSBTAP00000004917/1-1139 KEKQTDVIWK SNGSYFYTLD RHEAQDGQFL LQLPNVQPSS SGIYSATYLE BACU000360/1-1059 KEKQTDVIWK SNGSYFYTLD WHEAQEGRFL LQLPSVQPSS SGIYSATYLE bmy_16617T0/1-1031 KEKQTDVIWK SNGSYFYTLD WHEAQEGQFL LQLPSVQPSS SGIYSATYLE 201 250 ENSTTRP00000007671/1-1137 ASPLGSAFFR LIVRGCEAGH WGQDCTKECP GCLHGGVCHD QDGECVCPPG ENSP00000361554/1-1138 ASPLGSAFFR LIVRGCGAGR WGPGCTKECP GCLHGGVCHD HDGECVCPPG ENSBTAP00000004917/1-1139 ASPLGSAFFR LIVRGCEAGR WGQDCTKECP GCLHGGVCHD QDGECVCPPG BACU000360/1-1059 ASPLGSAFFR LIVRGCGAGH WGQDCTKECP GCLHGGVCHD QDGECVCPPG bmy_16617T0/1-1031 ASPLGSAFFR LIVRGCEAGH WGQDCTKECP GCLHGGVCHD QDGECVCPPG 251 300 ENSTTRP00000007671/1-1137 FTGTRCEQAC REGRFGQSCQ EQCPGTSGCR GLTFCLPDPY GCSCGSGWRG ENSP00000361554/1-1138 FTGTRCEQAC REGRFGQSCQ EQCPGISGCR GLTFCLPDPY GCSCGSGWRG ENSBTAP00000004917/1-1139 FTGTRCEQAC REGRFGQSCQ EQCPGTSGCR GLTFCLPDPY GCSCGSGWRG BACU000360/1-1059 FTGTRCEQAC REGRFGQSCQ EQCPGTSGCR GLTFCLPDPY GCSCGSGWRG bmy_16617T0/1-1031 FTGTRCEQAC REGRFGQSCQ EQCPGTSGCR GLTFCLPDPY GCSCGSGWRG 301 350 ENSTTRP00000007671/1-1137 SQCQEACAPG HFGADCHLQC QCQNGGTCDR FSGCVCPSGW HGVHCEKSDR ENSP00000361554/1-1138 SQCQEACAPG HFGADCRLQC QCQNGGTCDR FSGCVCPSGW HGVHCEKSDR ENSBTAP00000004917/1-1139 SQCQEACAPG RFGADCHLQC QCQNGGTCDR FSGCVCPSGW HGMHCEKSDR BACU000360/1-1059 SQCQEACAPG HFGADCHLQC QCQNGGTCDR FSGCVCPSGW HGVHCEKSDR bmy_16617T0/1-1031 SQCQEACAPG HFGADCHLQC QCQNGGTCDR FSGCVCPSGW HGVHCEKSDR 351 400 ENSTTRP00000007671/1-1137 IPQILDMVSE LEFNLETTPR INCAAAGNPF PVRGSVELRK PDGTVLLXXX ENSP00000361554/1-1138 IPQILNMASE LEFNLETMPR INCAAAGNPF PVRGSIELRK PDGTVLLSTK ENSBTAP00000004917/1-1139 IPQILDMVSE LEFNLDTMPR INCAAAGNPF PVRGSMELRK PDGTVLLSTK BACU000360/1-1059 IPQILDMVSE LEFNLETTPR INCAAAGNPF PVRGSVELRK PDGTVLLSTK bmy_16617T0/1-1031 IPQILDMVSE LEFNLETTPR INCAAAGNPF PVRGSVELRK PDGTVLLSTK 401 450 ENSTTRP00000007671/1-1137 XXXXXXXXXX XXXXXXXXXX XXXXWECRVS TSGGQDSRRF RVNVK----- ENSP00000361554/1-1138 AIVEPEKTTA EFEVPRLVLA DSGFWECRVS TSGGQDSRRF KVNVK----- ENSBTAP00000004917/1-1139 AIVEPDRTTA EFEVPRLALG DSGLWECRVS TSGGQDSRRF RINVK----- BACU000360/1-1059 AIVEPDRTTA EFEVPRLALG DSGLWECRVS TSGGQDSRRF RVNVKAQGVP bmy_16617T0/1-1031 AIVEPDRTTA EFEVPRLALG DSGLWECRVS TSGGQDSRRF RVNVK----- 451 500 ENSTTRP00000007671/1-1137 ---------- ---------- ---------- --------VP PVPLTAPRLL ENSP00000361554/1-1138 ---------- ---------- ---------- --------VP PVPLAAPRLL ENSBTAP00000004917/1-1139 ---------- ---------- ---------- --------VP PVPLTAPRLL BACU000360/1-1059 RSKPKTRVVF DAQKTESALI SNDGRVLSGP CLTPSLLAVP PVPLTAPRLL bmy_16617T0/1-1031 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000007671/1-1137 AKQSRQLVVS PLVSFSGDGP IASVRLHYRP QDSTMAWSTI VVYPSENVTM ENSP00000361554/1-1138 TKQSRQLVVS PLVSFSGDGP ISTVRLHYRP QDSTMDWSTI VVDPSENVTL ENSBTAP00000004917/1-1139 AKQSRQLVVS PLVSFSGDGP IASVRLHYRP QDSTMAWSTI VVDPSENVTL BACU000360/1-1059 AKQSRQLVVS PLVSFSGDGP IASVRLHYRP QDSTMAWSTI VVDPSENVTL bmy_16617T0/1-1031 ---------- ---------- ---------- ---------- -VDPSENVTL 551 600 ENSTTRP00000007671/1-1137 I-LRPKTGYS VRVQLSRPGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000361554/1-1138 MNLRPKTGYS VRVQLSRPGE GGEGAWGPPT LMTTDCPEPL LQPWLEGWHV ENSBTAP00000004917/1-1139 MNLRPKTGYS VRVQLSRPGE GGEGAWGPPT LMTTDCPEPL LKPWLEGWHV BACU000360/1-1059 MNLRPKTGYS VRVQLSRPGE ---------- -------EPL LQPWLEGWHV bmy_16617T0/1-1031 MNLRPKTGYS VRVQLSRPGE GGEGAWGPPT LMTTDCPEPL LQPWLEGWHV 601 650 ENSTTRP00000007671/1-1137 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000361554/1-1138 EGTDRLRVSW SLPLVPGPLV GDGFLLRLWD GTRGQERREN VSSPQARTAL ENSBTAP00000004917/1-1139 EGPDRLRVSW SLPPVPGPLV GDGFLLRLWD GARGQERREN VSSPQARTAL BACU000360/1-1059 EGPDRLRVSW SLPSVPGPLV GDGFLLRLWD GARGQERREN VSSPQARTAL bmy_16617T0/1-1031 EGPDRLRVSW SLPSVPGPLV GDGFLLRLWD GARGQERREN VSSPQARTAL 651 700 ENSTTRP00000007671/1-1137 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXPPA PRHLHAQALS ENSP00000361554/1-1138 LTGLTPGTHY QLDVQLYHCT LLGPASPPAH VLLPPSGPPA PRHLHAQALS ENSBTAP00000004917/1-1139 LTGLTPGTYY QLDVRLYHCT LLGPASPAAR VLLPPSGPPA PRHLHAQALS BACU000360/1-1059 LTGLTPGTHY QLDVRLYHCT LLGPASPAAR VLLPPSGPPA PRHLHAQALS bmy_16617T0/1-1031 LTGLTPGTHY QLDVRLYHCT LLGPASPAAR VLLPPSGPPA PRHLHAQALS 701 750 ENSTTRP00000007671/1-1137 DSEIQLVWQR PEAPAGPISK YIVEVQVAEG SGDPLWMDVD RPEETSTVVR ENSP00000361554/1-1138 DSEIQLTWKH PEALPGPISK YVVEVQVAGG AGDPLWIDVD RPEETSTIIR ENSBTAP00000004917/1-1139 DSEIQLMWQR PEAAAGPISK YIVEVQVAGG SGDPLWMDVD RPEETSTIVR BACU000360/1-1059 DSEIQLVWQR PEAPAGPISK YIVEVQVAEG SGDPLWMDVD RPEETSTVVR bmy_16617T0/1-1031 DSEIQLVWQR PEAPAGPISK YIVEVQVAEG SGDPLWMDVD RPEETSTVVR 751 800 ENSTTRP00000007671/1-1137 GLNASTRYLF RVRASVQGPG DWSDMVEEST LSNGLQSEGP VQEVQAAEEG ENSP00000361554/1-1138 GLNASTRYLF RMRASIQGLG DWSNTVEEST LGNGLQAEGP VQESRAAEEG ENSBTAP00000004917/1-1139 GLNASTRYLF RVRASVQGPG DWSNVVEQST LGNGLQIEGP VQEIHAAEEG BACU000360/1-1059 GLNASTRYLF RVRASVQGPG DWSNMVEEST LSNGLQSEGP VQEVQAAEEG bmy_16617T0/1-1031 GLNASTRYFF RVRASVQGPG DWSNMVEEST LSNGLQSEGP VQEVQAAEEG 801 850 ENSTTRP00000007671/1-1137 LDQQLVLAVV GSVSATCLTI LAALLTLACI RRSCLHRRRT FTYQSGSGEE ENSP00000361554/1-1138 LDQQLILAVV GSVSATCLTI LAALLTLVCI RRSCLHRRRT FTYQSGSGEE ENSBTAP00000004917/1-1139 LDQQLVLAVV GSVSATCLTI LAALLTLACI RKSCLHRRRT FTYQSGSGEE BACU000360/1-1059 LDQQLVLAVV GSVSATCLTI LAALLTLACI RRSCLHRRRT FTYQSGSGEE bmy_16617T0/1-1031 LDQQLVLAVV GSVSATCLTI LAALLTLACI RRSCLHRRRT FTYQSGSGEE 851 900 ENSTTRP00000007671/1-1137 TILQFSSGTL TLTRRPKPQP EPLNYPVLEW EDITFEDLIG EGNFGQVIRA ENSP00000361554/1-1138 TILQFSSGTL TLTRRPKLQP EPLSYPVLEW EDITFEDLIG EGNFGQVIRA ENSBTAP00000004917/1-1139 TILQFSSGTL TLTRRPKPQP EPLNYPVLEW EDITFEDLIG EGNFGQVIRA BACU000360/1-1059 TILQFSSGTL TLTRRPKPQP EPLNYPVLEW EDITFEDLIG EGNFGQVIRA bmy_16617T0/1-1031 TILQFSSGTL TLTRRPKPQP EPLNYPVLEW EDITFEDLIG EGNFGQVIRA 901 950 ENSTTRP00000007671/1-1137 MIKKDGLKMN AAIKMLKEYA SENDHRDFAG ELEVLCKLGH HPNIINLLGA ENSP00000361554/1-1138 MIKKDGLKMN AAIKMLKEYA SENDHRDFAG ELEVLCKLGH HPNIINLLGA ENSBTAP00000004917/1-1139 MIKKDGLKMN AAIKMLKEYA SENDHRDFAG ELEVLCKLGH HPNIINLLGA BACU000360/1-1059 MIKKDGLKMN AAIKMLKEYA SENDHRDFAG ELEVLCKLGH HPNIINLLGA bmy_16617T0/1-1031 MIKKDGLKMN AAIKMLKEYA SENDHRDFAG ELEVLCKLGH HPNIINLLGA 951 1000 ENSTTRP00000007671/1-1137 CENRGYLYIA IEYAPYGNLL DFLRKSRVLQ TDPAFAREHG TASTLSSRQL ENSP00000361554/1-1138 CKNRGYLYIA IEYAPYGNLL DFLRKSRVLE TDPAFAREHG TASTLSSRQL ENSBTAP00000004917/1-1139 CENRGYLYIA IEYAPYGNLL DFLRKSRVLE TDPAFAREHG TASTLSSRQL BACU000360/1-1059 CENRGYLYIA IEYAPYGNLL DFLRKSRVLE TDPAFAREHG TASTLSSRQL bmy_16617T0/1-1031 CENRGYLYIA IEYAPYGNLL DFLRKSRVLE TDPAFAREHG TASTLSSRQL 1001 1050 ENSTTRP00000007671/1-1137 LRFASDAANG MQYLSEKQFI HRDLAARNVL VGENLASKIA DFGLSRGEEV ENSP00000361554/1-1138 LRFASDAANG MQYLSEKQFI HRDLAARNVL VGENLASKIA DFGLSRGEEV ENSBTAP00000004917/1-1139 LRFASDAANG MQYLSEKQFI HRDLAARNVL VGENLASKIA DFGLSRGEEV BACU000360/1-1059 LRFASDAANG MQYLSEKQFI HRDLAARNVL VGENLASKIA DFGLSRGEEV bmy_16617T0/1-1031 LRFASDAANG MQYLSEKQFI HRDLAARNVL VGENLASKIA DFGLSRGEEV 1051 1100 ENSTTRP00000007671/1-1137 YVKKTMGRLP VRWMAIESLN YSVYTTKSDV WSFGVLLWEI VSLGGTPYCG ENSP00000361554/1-1138 YVKKTMGRLP VRWMAIESLN YSVYTTKSDV WSFGVLLWEI VSLGGTPYCG ENSBTAP00000004917/1-1139 YVKKTMGRLP VRWMAIESLN YSVYTTKSDV WSFGVLLWEI VSLGGTPYCG BACU000360/1-1059 YVKKTMGRLP VRWMAIESLN YSVYTTKSDV WSFGVLLWEI VSLGGTPYCG bmy_16617T0/1-1031 YVKKTMGRLP VRWMAIESLN YSVYTTKSDV WSFGVLLWEI VSLGGTPYCG 1101 1150 ENSTTRP00000007671/1-1137 MTCAELYEKL PQGYRMEQPR NCDDEVYELM RQCWRDRPYE RPPFAQIALQ ENSP00000361554/1-1138 MTCAELYEKL PQGYRMEQPR NCDDEVYELM RQCWRDRPYE RPPFAQIALQ ENSBTAP00000004917/1-1139 MTCAELYEKL PQGYRMEQPR NCDDEVYELM RQCWRDRPYE RPPFAQIALQ BACU000360/1-1059 MTCAELYEKL PQGYRMEQPR NCDDEVYELM RQCWRDRPYE RPPFAQIALQ bmy_16617T0/1-1031 MTCAELYEKL PQGYRMEQPR NCDDEVYELM RQCWRDRPYE RPPFAQIALQ 1151 1200 ENSTTRP00000007671/1-1137 LGRMLEARKA YVNMSLFENF TYAGIDATAE EA ENSP00000361554/1-1138 LGRMLEARKA YVNMSLFENF TYAGIDATAE EA ENSBTAP00000004917/1-1139 LGRMLEARKA YVNMSLFENF TYAGIDATAE EA BACU000360/1-1059 LGRMLEARKA YVNMSLFENF TYAGIDATAE EA bmy_16617T0/1-1031 LGRMLEARKA YVNMSLFENF TYAGIDATAE EA