KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:11 2014 Check: 00 .. Name: ENSTTRP00000007686/1-511 Len: 709 Check: 8042 Weight: 1.00 Name: ENSP00000361548/1-635 Len: 709 Check: 1315 Weight: 1.00 Name: ENSBTAP00000004921/1-644 Len: 709 Check: 3840 Weight: 1.00 Name: bmy_16618T0/1-708 Len: 709 Check: 8642 Weight: 1.00 Name: BACU000359/1-708 Len: 709 Check: 5752 Weight: 1.00 // 1 50 ENSTTRP00000007686/1-511 MPSWALLVVI SCLLPAPQNL AQVTSQ---- ---------- ---------- ENSP00000361548/1-635 MPSWALFMVT SCLLLAPQNL AQVSSQ---- ---------- ---------- ENSBTAP00000004921/1-644 MPSWALLAVI SYLLPVPQYL AQVTSQ---- ---------- ---------- bmy_16618T0/1-708 MPSWALLVVI SCLLPAPQNL AQVTSQGEVC GGWRSPIPRK REPWEGDVQN BACU000359/1-708 MPSWALLVVI SCLLPAPQNL AQVTSQGEVC GGWRSPIPRK REPWEGDVQN 51 100 ENSTTRP00000007686/1-511 ---------- ---------- -------DAS LLASDSESLN CFSRTFEDLT ENSP00000361548/1-635 ---------- ---------- -------DVS LLASDSEPLK CFSRTFEDLT ENSBTAP00000004921/1-644 ---------- ---------- -------DVS SLASDSESLN CFSRTFEDLT bmy_16618T0/1-708 RRLLLVPDSC PQTYQGGPRA QLTSYSSDAS LLASDSESLN CFSRTFEDLT BACU000359/1-708 RRLPLVPDSC PQTYQGGPRA QLTSYSSDAS LLASDSEALN CFSRTFEDLT 101 150 ENSTTRP00000007686/1-511 CFWDEEEAAP SEIYQLLYAY PG-KPRA-PL SSQRVLF--E RYVCQFP-QD ENSP00000361548/1-635 CFWDEEEAAP SGTYQLLYAY PREKPRACPL SSQSMPHFGT RYVCQFPDQE ENSBTAP00000004921/1-644 CFWDEEEGAP SEMYQLLYAY PGEQPRTCPL SSQHVMPFRT RYVCQFPAQA bmy_16618T0/1-708 CFWDEEEAAP SEIYQLLYAY PGEKPRACPL SSQRVLPFGT RYVCQFPAQD BACU000359/1-708 CFWDEEEAAP SEIYQLLYAY QGEKPRACPL SSQRVLPFGT RYVCQFPAQD 151 200 ENSTTRP00000007686/1-511 EVRL-SQLHL -VKNVF-NQN LTQRVLSVDS VGLPGPPSLI KAMGGSQPGE ENSP00000361548/1-635 EVRLFFPLHL WVKNVFLNQT RTQRVLFVDS VGLPAPPSII KAMGGSQPGE ENSBTAP00000004921/1-644 EVRLFSQLHL WVKNVFLNQN LTQRVLSVDA VGLPTPPSLI KAMGGSQPGE bmy_16618T0/1-708 EVRLFSQLYL WVKNVFLNQN LTQRVLSVDS VGLPAPPSLI KAMGGSQPGE BACU000359/1-708 EVRLFSQLHL WVKNVFLNQN LTQRVLSVDS VGLPAPPSLI KAMGGSQPGE 201 250 ENSTTRP00000007686/1-511 LQISWEVPAP EISEFLRHEL RYGPKDPRNS TGPTVTLLLS TETCCPALRR ENSP00000361548/1-635 LQISWEEPAP EISDFLRYEL RYGPRDPKNS TGPTVIQLIA TETCCPALQR ENSBTAP00000004921/1-644 LQISWEAPAP EINEFLRHEL RYGPKDPRNS SGATVTQLLS AETCCPAQRR bmy_16618T0/1-708 LQISWEAPAP EISEFLRHEL RYGPKDPRNS TGPTVTLLLS TETCCPALRR BACU000359/1-708 LQISWEAPAP EISEFLRHEL CYGPKDPRNS TGPTVKLLLS TETCCPALRR 251 300 ENSTTRP00000007686/1-511 PNLAPAPDES PCAQPVMPQQ DVPEQTPTTR EAPSLTVKGG SCLLSGLQPG ENSP00000361548/1-635 PHSASALDQS PCAQPTMPWQ DGPKQTSPSR EASALTAEGG SCLISGLQPG ENSBTAP00000004921/1-644 PNLAAALDPS PCSQPMMPQQ TGPEQTSPTR EAPSLTTKGG SCLISGLQPG bmy_16618T0/1-708 PNLAPALDQS PCAQPMMPQQ DVPEQTSTTR EAPSLTVKGG SCLISGLQPG BACU000359/1-708 PNLAPALDQS ACAQPMMPQQ DVPEQTSTTR EAPSLTVKGG SCLISGLQPG 301 350 ENSTTRP00000007686/1-511 NSYWLQLRSQ PDGVSLRGSW GSWSLPVTVD LPGDAVEIGL QCFTLDLKNV ENSP00000361548/1-635 NSYWLQLRSE PDGISLGGSW GSWSLPVTVD LPGDAVALGL QCFTLDLKNV ENSBTAP00000004921/1-644 NSYWLQLRSQ PDGVSLRGSW GSWSLPVTVD LPGDAGEIGL QCFTLDLTNV bmy_16618T0/1-708 NSYWLQLRSQ PDGVSLRGSW GSWSLPVTVD LPGDAVEIGL QCFTLDLKNV BACU000359/1-708 NSYWLQLRSQ PDGVSLRGSW GSWSLPVTVD LPGDAVEIGL QCFTLDLKNV 351 400 ENSTTRP00000007686/1-511 TCQWQQQDHA SSQGFFYHSR AWCCPRDRDP VWEKCEEQKK -NPGSQPSQF ENSP00000361548/1-635 TCQWQQQDHA SSQGFFYHSR ARCCPRDRYP IWENCEEEEK TNPGLQTPQF ENSBTAP00000004921/1-644 TCQWQQQDHA SSQGFFYHSR ARCCPRDRDP VWEKCEEEK- -NSGSQSSQF bmy_16618T0/1-708 TCQWQQQDHA SSQGFFYHSR AWCCPRDRDP VWEKCEEEEK -NPGSQPSQF BACU000359/1-708 TCQWQQQDHA SSQGFFYHSR AWCCPRNRDP IWEKCEEEEK -NPGSQPSQF 401 450 ENSTTRP00000007686/1-511 SRCHFKSRND SAIHILVEVT TAQGAIHSYL GSPFWIHAX- ---------- ENSP00000361548/1-635 SRCHFKSRND SIIHILVEVT TAPGTVHSYL GSPFWIHQA- ---------- ENSBTAP00000004921/1-644 SRCHFKSQNN SAIHILVEVT TAQGAVHSYL GSPFWIHQA- ---------- bmy_16618T0/1-708 SRCHFKSRND SVIHILVEVT TAQGAIHSYL GSPFWIHQAE GLRPVPADVP BACU000359/1-708 SRCHFKSRND SVIHILVEVT TAQGAIHSYL GSPFWIHQAE GLRPVPADVP 451 500 ENSTTRP00000007686/1-511 --XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000361548/1-635 -VRLPTPNLH WREISSGHLE LEWQHPSSWA AQETCYQLRY TGEGHQDWKV ENSBTAP00000004921/1-644 -VLIPTPNLH WREVSSGQLE LEWQHPSAWA AQETCYQLRY TAEGHQDWKV bmy_16618T0/1-708 VVLIPTPNLH WREVSSGQLE LEWQHPSPWA AQETCYQLRY TGEGHQDWKM BACU000359/1-708 VVLIPTPNLH WREVSSGQLE LEWQHPSPWA AQETCYQLRY TGEGHQDWKV 501 550 ENSTTRP00000007686/1-511 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000361548/1-635 LEPPLGARGG TLELRPRSRY RLQLRARLNG PTYQGPWSSW SDPTRVETAT ENSBTAP00000004921/1-644 LEPPLGAQGE TLELRPRSRY RVQLRARLHG PTFQGPWSSW SDPVRVETAS bmy_16618T0/1-708 LEPPLGAQGE TLELRPRSRY SVQLRARLHG PTFHGLWSAW SDPVRVETTS BACU000359/1-708 LEPPLGAQGE TLELRPRSRY RVQLRARLHG PTFHGPWSAW SDPVRVETTS 551 600 ENSTTRP00000007686/1-511 XXXXXXXXXX XXXXXXXXXX XXXXXXXWQF PAHY------ ---------- ENSP00000361548/1-635 ETAWISLVTA LHLVLGLSAV LGLLLLRWQF PAHYRRLRHA LWPSLPDLHR ENSBTAP00000004921/1-644 ETVWIFLVTA LLLVLSVSAL LGLLLLRWQF PEHYRSLRHA LWPSLPDLHR bmy_16618T0/1-708 ETAWIFLVTA LLVVLGVSAL LGLLLLRWQF PAHYRSLRHA LWPSLPDLHR BACU000359/1-708 ETAWIFLVTA LLLVLGVSAL LGLLLLRWQF PAHYRSLRHA LWPSLPDLHR 601 650 ENSTTRP00000007686/1-511 ---------- ---------- ---------- ---------- ---------- ENSP00000361548/1-635 VLGQYLRDTA ALSPPKATVS DTCEEVEPSL LEILPKSSER TPLPLCSSQA ENSBTAP00000004921/1-644 VLGQYLRDTA ALSPPKAAVS DVYEEVEPSL LEILPRSSEK APLPLCSSQA bmy_16618T0/1-708 VLGQYLRDTA ALSPPKAAVS DTCEEVEPSL LEILPRSSEK TPLPLCSSQA BACU000359/1-708 VLGQYLRDTA ALSPPKAAVS DTCEEVEPSL LEILPRSSEK TPLPLCSSQA 651 700 ENSTTRP00000007686/1-511 ---------- ---------- ---------- ---------- ---------- ENSP00000361548/1-635 QMDYRRLQPS CLGTMPLSVC PPMAESGSCC TTHIANHSYL PLSYWQQP-- ENSBTAP00000004921/1-644 QLDYRGLQPS CLGTMPLSVC PPMAEPGSYC ATHIANHSYL PLSCWQVPRS bmy_16618T0/1-708 QMDYRGLQPS CLGTMPLSVC PRMAETGSYC TTHIANHSYL PLSCWQAPRS BACU000359/1-708 QMDYRGLQPS CLGTMPLSVC PRMAETASYC TTHIANHSYL PLSCWQAPRS 701 750 ENSTTRP00000007686/1-511 --------- ENSP00000361548/1-635 --------- ENSBTAP00000004921/1-644 QYPGQIQTL bmy_16618T0/1-708 QYPGQIQTL BACU000359/1-708 QYPGQIQTL