KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:13 2014 Check: 00 .. Name: ENSP00000416066/1-418 Len: 813 Check: 579 Weight: 1.00 Name: ENSBTAP00000004927/1-416 Len: 813 Check: 4875 Weight: 1.00 Name: bmy_17966T0/1-804 Len: 813 Check: 8642 Weight: 1.00 Name: BACU007735/1-638 Len: 813 Check: 2485 Weight: 1.00 Name: ENSTTRP00000006747/1-421 Len: 813 Check: 7132 Weight: 1.00 // 1 50 ENSP00000416066/1-418 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004927/1-416 ---------- ---------- ---------- ---------- ---------- bmy_17966T0/1-804 PCPSQTCCLS HPELPSSCAG RAQALHSGTH SLHATARSPR GRSSFRCRNW BACU007735/1-638 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006747/1-421 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000416066/1-418 ---------- ---------- ---------- ---------M PSSVSWGILL ENSBTAP00000004927/1-416 ---------- ---------- ---------- ---------M ALSITRGLLL bmy_17966T0/1-804 ELKQPPTSSL WIHCLNTGKD SALSPQPWSP APTWDSESTM ASSITWGLLL BACU007735/1-638 ---------- ---------- ---------- ---------M AYSITWGLLL ENSTTRP00000006747/1-421 ---------- ---------- ---------- ---------M ASSITWGLLL 101 150 ENSP00000416066/1-418 LAGLCCLVPV SLAEDPQGDA AQKTDTSHHD QDH---PTFN KITPNLAEFA ENSBTAP00000004927/1-416 LAALCCLAPI SLAGVLQGHA VQETDDTSH- ----QEAACH KIAPNLANFA bmy_17966T0/1-804 LAGLCCLVPI SLAEGLQGHA VQETDASQHD HEHHQEAACH KIAPNLVDFA BACU007735/1-638 LAGLCCLVPI SLAEGLQGHA VQETDASQHD HEHHQEAACH KIAPNLADFA ENSTTRP00000006747/1-421 LAGLCCLVPV SLAEGLQGHA VQETDASQQD REHRQEAACH KIAPNLVDFA 151 200 ENSP00000416066/1-418 FSLYRQLAHQ SNSTNIFFSP VSIATAFAML SLGTKADTHD EILEGLNFNL ENSBTAP00000004927/1-416 FSIYHHLAHQ SNTSNIFFSP VSIASAFAML SLGAKGNTHT EILKGLGFNL bmy_17966T0/1-804 FTVYRRVAHE SNATNIFFSP VSIATAFAML SLGTKCDTHT EILEGLHFNL BACU007735/1-638 FTVYRQVAHE SNATNIFFSP VSIATAFAML SLGTKGDTHT EILEGLDFNL ENSTTRP00000006747/1-421 FSVYRRVAHE SNATNIFFSP VSIATAFAML SLGTKGDTHT EILEGLDFNL 201 250 ENSP00000416066/1-418 TEIPEAQIHE GFQELLRTLN QPDSQLQLTT GNGLFLSEGL KLVDKFLEDV ENSBTAP00000004927/1-416 TELAEAEIHK GFQHLLHTLN QPNHQLQLTT GNGLFINESA KLVDTFLEDV bmy_17966T0/1-804 TAITEAEIHE GFQHLLHTLN QPDNQLQLTT GNGLFINESA KLVNKFLEDV BACU007735/1-638 TARTEAEIHE GFQHLLHTLN QPDNQLQLTT GNGLFINESA KLVSKFLEDV ENSTTRP00000006747/1-421 TTRIEAEIHE GFQHLLHTLN QPDNKLQLTT GNGLFINESA KLVSKFLEDV 251 300 ENSP00000416066/1-418 KKLYHSEAFT VNFGDTEEAK KQINDYVEKG TQGKIVDLVK ELDRDTVFAL ENSBTAP00000004927/1-416 KNLYHSEAFS INFRDAEEAK KKINDYVEKG SHGKIVELVK VLDPNTVFAL bmy_17966T0/1-804 KNLYHSEAFS INFRDAEGAK KKINDYVEKG SQGKIVDLVD DLHQDTVFAL BACU007735/1-638 KNLYHSEAFS INFRDAEEAK KKINDYVEKG SQGKIVDLVD DLDQDTVFAL ENSTTRP00000006747/1-421 KNLYHSEAFS INFRDAEEAK KKINDYVKKG SQGKIVDLVD DLDQDTVFAL 301 350 ENSP00000416066/1-418 VNYIFFKGKW ERPFEVKDTE EEDFHVDQVT TVKVPMMKRL GMFNIQHCKK ENSBTAP00000004927/1-416 VNYISFKGKW EKPFEMKHTT ERDFHVDEQT TVKVPMMNRL GMFDLHYCDK bmy_17966T0/1-804 VNYIFFK--- ------ERTT ERDFHVDEET TVKVPMMNRL GMFDLHYCDN BACU007735/1-638 VNYIFFKGKW EKPFEAEHTT ERDFHVDEET TVKVPMMNRL GMYDLHYCDN ENSTTRP00000006747/1-421 VNYIFFKGKW EKPFEEEHTT ERDFHVDEET TVKVPMMNRL GMFDLHYCDR 351 400 ENSP00000416066/1-418 LSSWVLLMKY LGNATAIFFL PDEGKLQHLE NELTHDIITK FLENEDRRSA ENSBTAP00000004927/1-416 LASWVLLLDY VGNVTACFIL PDLGKLQQLE DKLNNELLAK FLEKKYASSA bmy_17966T0/1-804 LASWVLLMDY VGNATALFIL PDQGKLQHLE DKLTKELLAK VLEKRYTSSA BACU007735/1-638 LASWVLLMDY VGNATALFIL PDQGKLKHLE DKLTKELLAK VLEKRYTSSA ENSTTRP00000006747/1-421 LTSWVLLMDY VGNATAVFIL PDQGKLQHLE DQLSKELLAK VLEKRYASSA 401 450 ENSP00000416066/1-418 SLHLPKLSIT GTYDLKSVLG QLGITKVFSN GADLSGVTEE APLKLSKAVH ENSBTAP00000004927/1-416 NLHLPKLSIS ETYDLKSVLG DVGITEVFSD RADLSGITKE QPLKVSKALH bmy_17966T0/1-804 NLHLPKLSIS GTYDLKTLLG KLGITKVFSN GADLSGITEE VPLKLSKALH BACU007735/1-638 NLHLPKLSIS GTYDLKTLLG KLGITKVFSN GADLSGITEE VPLKLSKALH ENSTTRP00000006747/1-421 NLHLPKLSIS GTYDLKTLLG KLGITKVFSN GADLSGITEE VPLKLSKAVH 451 500 ENSP00000416066/1-418 KAVLTIDEKG TEAAGAMFLE AIPMSIPPEV K--------- ---------- ENSBTAP00000004927/1-416 KAALTIDEKG TEAVGSTFLE AIPMSLPPDV E--------- ---------- bmy_17966T0/1-804 KAVLTIDEKG TEAAGATFLE AIPMSIPPEV ETMASSITWG LLLLTGLCSQ BACU007735/1-638 KAVLTIDEKG TEAAGTTFME AIPMSIPPEV E--------- ---------- ENSTTRP00000006747/1-421 KAVLTIDEKG TEATGATILE AIPMSIPPEV E--------- ---------- 501 550 ENSP00000416066/1-418 ---------- ----FNKPFV ---------- ---------- ---------- ENSBTAP00000004927/1-416 ---------- ----FNRPFL ---------- ---------- ---------- bmy_17966T0/1-804 VPGARRQSSL DIYHYDLPHF SSFAFSLYHE LAHQSNHKII FSPQPNNQFQ BACU007735/1-638 ---------- ----YNRPFF ---------- ---------- ---------- ENSTTRP00000006747/1-421 ---------- ----YNRPFF ---------- ---------- ---------- 551 600 ENSP00000416066/1-418 -----FLMIE QNTK------ ---------- --S------- ---------- ENSBTAP00000004927/1-416 -----CILYD RNTK------ ---------- --S------- ---------- bmy_17966T0/1-804 LTTSTMLIID KNLKQKPEFL YNVKKLYHSK AXSINFRNIK EAKKEINHQI BACU007735/1-638 -----FIIYD QSTK------ ---------- --APLFVGKQ EAKKEINHQI ENSTTRP00000006747/1-421 -----FIIYD KNTK------ ---------- --T------- ---------- 601 650 ENSP00000416066/1-418 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004927/1-416 ---------- ---------- ---------- ---------- ---------- bmy_17966T0/1-804 KIRTQGKIVD LVKELDEDTA LALVNYIIFE GKGKDKFEAQ RFLTGDFHVN BACU007735/1-638 KIRTQGIIVG LVKELDEDTA LALVNYISFE GKGKDKFEAQ HFLTGDFHVN ENSTTRP00000006747/1-421 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000416066/1-418 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004927/1-416 ---------- ---------- ---------- ---------- ---------- bmy_17966T0/1-804 EKITVKVPVI NHLDMFQFHL YRDNEFSCWV LVQHYQGRMA AFLLLPNLGK BACU007735/1-638 EKITVKVPVI NHLGVFQFHL YRDNEFSCWV LVQHYQGRMA AFLLLPNMGK ENSTTRP00000006747/1-421 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000416066/1-418 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004927/1-416 ---------- ---------- ---------- ---------- ---------- bmy_17966T0/1-804 MQLLEDGLSE KHLAKILKYL EIRQTGHHKV FSNRADLSGI TEEVPLKLSK BACU007735/1-638 MQLLEDGLSE KHLAKLLKYL EIRFVNLHLP KLSISGTYDL KTVLGKLGIT ENSTTRP00000006747/1-421 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000416066/1-418 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004927/1-416 ---------- ---------- ---------- ---------- ---------- bmy_17966T0/1-804 AIHEAVMSIN ENGTEHAGAT LSEESAWSEH LTINFNMPFL IIIKDENTNI BACU007735/1-638 AIHEAVMSIS ENGTEHAGAT LSEESAWSEY LTINFNMPFL IIIKDENTNI ENSTTRP00000006747/1-421 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000416066/1-418 PLFMGKVVNP TQK ENSBTAP00000004927/1-416 PLFVGKVVNP TQA bmy_17966T0/1-804 PLFMGKVVNP MQK BACU007735/1-638 PLFMGKVVNP MQK ENSTTRP00000006747/1-421 PLFMGKVVNP TQK