KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:25:15 2014 Check: 00 .. Name: bmy_18468T0/1-296 Len: 372 Check: 3998 Weight: 1.00 Name: BACU004604/1-133 Len: 372 Check: 3206 Weight: 1.00 Name: ENSP00000395389/1-353 Len: 372 Check: 4635 Weight: 1.00 Name: ENSBTAP00000004931/1-367 Len: 372 Check: 2170 Weight: 1.00 // 1 50 bmy_18468T0/1-296 ---------- ----MNECYY DKQMDFFYNR SNTDTANEWT GTKLVIVLCV BACU004604/1-133 ---------- ---------- ---------- ---------- ---------- ENSP00000395389/1-353 ---------- ----MNECHY DKHMDFFYNR SNTDTVDDWT GTKLVIVLCV ENSBTAP00000004931/1-367 MKEVNKKDVQ FFSTMNECYY DKRMDFFYNR SNTDTADEWT GTKLLIVLCF 51 100 bmy_18468T0/1-296 GTFFCLFIFF SNSLVIAAVI KNRKFHFPFY YLLANLAAAD FFAGIAYVYL BACU004604/1-133 ---------- ---------- ---------- ---------- MFNGLIFSAT ENSP00000395389/1-353 GTFFCLFIFF SNSLVIAAVI KNRKFHFPFY YLLANLAAAD FFAGIAYVFL ENSBTAP00000004931/1-367 GTFFCLFIFF SNSLVIAAVI KNRKFHFPFY YLLANLAAAD FFAGIAYVYL 101 150 bmy_18468T0/1-296 MFNTGPVSKT LTVNRWFLRQ GLLDTSLTAS LTNLLVIAVE RHMSIMRMRV BACU004604/1-133 EY-------- ---------- ---------- ---------- ---------- ENSP00000395389/1-353 MFNTGPVSKT LTVNRWFLRQ GLLDSSLTAS LTNLLVIAVE RHMSIMRMRV ENSBTAP00000004931/1-367 MFNTGPVSKT LTVNRWFLRQ GLLDASLTAS LTNLLVIAVE RHMSIMRMRV 151 200 bmy_18468T0/1-296 HSNLTKKRVT LLILFVWAIA IFMGAVPTLG WNCLCDISAC SSLAPIYSRS BACU004604/1-133 ---------- ---------- ---GAL---- ---------- ---------- ENSP00000395389/1-353 HSNLTKKRVT LLILLVWAIA IFMGAVPTLG WNCLCNISAC SSLAPIYSRS ENSBTAP00000004931/1-367 HSNLTKKRVT LLILFIWAIA IFMGAVPTLG WNCLCDISAC SSLAPIYSRS 201 250 bmy_18468T0/1-296 YLIFWTVSNL MAFFIMVVVY LRIYIS---- ---------- ---------- BACU004604/1-133 ---------- ---------- ---YFMLRTQ T--------- ---------- ENSP00000395389/1-353 YLVFWTVSNL MAFLIMVVVY LRIYVYVKRK TNVLSPHTSG SISRRRTPMK ENSBTAP00000004931/1-367 YLIFWTVSNL MAFFIMVVVY LRIYMYVKRK TNVLSPHTSG SISRRRTPMK 251 300 bmy_18468T0/1-296 ---------- ------TLNP LCLLSGERGG RQSGANQRST FVADAFPLGF BACU004604/1-133 ---------G AFVVCWTPGL VVLLLDGLNC TWCNVQHVKR WF---LLLAL ENSP00000395389/1-353 LMKTVMTVLG AFVVCWTPGL VVLLLDGLNC RQCGVQHVKR WF---LLLAL ENSBTAP00000004931/1-367 LMKTVMTVLG AFVVCWTPGL VVLLLDGLNC TRCNVQHVKR WF---LLLAL 301 350 bmy_18468T0/1-296 MSLQQGPL-- -GEGPLLPGK L-----CLPL Q-SVQKSFYQ IFVVVSSKPE BACU004604/1-133 LNSVMNPIIY SYKDEDMYST MKRMLCCFSQ EKHPERRPSH IPSMVLSRSD ENSP00000395389/1-353 LNSVVNPIIY SYKDEDMYGT MKKMICCFSQ E-NPERRPSR IPSTVLSRSD ENSBTAP00000004931/1-367 CNSVMNPIIY SYKDEDMYST MKRMLCCFSQ E-NPERRPSR LPSMVLSRSD 351 400 bmy_18468T0/1-296 T----FL--- ------FSRN XY BACU004604/1-133 TGGSQSMEDN SNRGQVCNKS SS ENSP00000395389/1-353 T-GSQYIEDS ISQGAVCNKS TS ENSBTAP00000004931/1-367 TGGSQYTEDN -NRGPVCNKS SS