KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:25:15 2014 Check: 00 ..
Name: ENSP00000379263/1-490 Len: 491 Check: 38 Weight: 1.00
Name: ENSBTAP00000004942/1-490 Len: 491 Check: 9979 Weight: 1.00
Name: ENSTTRP00000003452/1-490 Len: 491 Check: 4321 Weight: 1.00
Name: bmy_10728T0/1-491 Len: 491 Check: 315 Weight: 1.00
Name: BACU005227/1-489 Len: 491 Check: 4211 Weight: 1.00
//
1 50
ENSP00000379263/1-490 MERVGCTLTT TYAHPRPTPT NFLPAISTMA SSYRDRFPHS NLTHSLSLPW
ENSBTAP00000004942/1-490 MELLGSTLTA TYAHPSPTPT NFLPAISTMA STYRDRFPHY NLTHSLSLPW
ENSTTRP00000003452/1-490 MELLGSTLAA PYAHPRPTPA NFLPAISAMA SSYRNCFPHC NLTHSLSLPW
bmy_10728T0/1-491 MELLGSTLAA TYAHPRPTPA NFLPAISAMA SSYRDCFPHC NLTHSLSLPW
BACU005227/1-489 MELLGSTLAA TYAHPRPTPA NFLPAISAMA SSYRDCFPHC NLTRSLSLPW
51 100
ENSP00000379263/1-490 RPSTYYKVAS NSPSVAPYCT RSQRVSENTM LPFVSNRTTF FTRYTPDDWY
ENSBTAP00000004942/1-490 RPSTYYKAAS NWPTLDPYCT RSQRVSESTM LPFVSNRTTL FTRYTPDDWY
ENSTTRP00000003452/1-490 RPSTYYKAAS NSPALDPCCT RSQRVSESTT LPCVSNRTTL FTRYTPDDWY
bmy_10728T0/1-491 RPSTYYKAAS SSPALDPYCT RPQRVSESTT LPFVSNRTTL FTRYTPDDWY
BACU005227/1-489 RPSSYYKAAS NSPALDPYCT RSQRVSESTT LPFVSNRTTL FTRYTPDDWY
101 150
ENSP00000379263/1-490 RSNLTNYQES NTSRHNSEKL RVDTSRLIQD KYQQTRKTQA DTTQNLGERV
ENSBTAP00000004942/1-490 RSNLTNFQES NTSRHNSERL RVDTSRLIQD KYQQTRKTQA DSTQNLGERV
ENSTTRP00000003452/1-490 RSNLANFQES NTSRHNSERL RVDTSRLIQD KYQQTRKTQA DSTHNLGERV
bmy_10728T0/1-491 RSNLTNFQES NTSRHNSERL RIDTSRLIQD KYQQTRKTQA DSTQNLGERV
BACU005227/1-489 RSNLTNFQES NASRHNSERL RIDTSRLIQD KYQQTRKTQA DSTQNLGERV
151 200
ENSP00000379263/1-490 NDIGFWKSEI IHELDEMIGE TNALTDVKKR LERALMETEA PLQVARECLF
ENSBTAP00000004942/1-490 NDIGFWKSEI IHELDAMIGE TNKLTDIKKR LERALMETEA PLQVARECLF
ENSTTRP00000003452/1-490 NDIGFWKSEI IHELDAMIGE TNELTDVKKK LERALMETEA PLQVARECLS
bmy_10728T0/1-491 NDIGFWKSEI THELDAMIGE TNELTDIKKK LERALMETEA PLQVARECLF
BACU005227/1-489 NDIGFWKSEI THELDAMIGE TNELTDIKKK LERALMETEA PLQVARECLF
201 250
ENSP00000379263/1-490 HREKRMGIDL VHDEVEAQLL TEVDTILCCQ ERMKLHLDKA IAQLAANRAS
ENSBTAP00000004942/1-490 HREKRMGIDL VHDEVEKELL TEVDIILCCQ ERMKLYLDKA IAQLAANRAA
ENSTTRP00000003452/1-490 HREKRMGIDL VHDEVEKELL TEVDIILCCQ ERMKLHLDKA IAQLAANRAS
bmy_10728T0/1-491 HREKRMGIDL VHDEVETELL MEVDIILCCQ ERMKLHLDKA IAQLAANRAS
BACU005227/1-489 HREKRMGIDL VHDEVETELL MEVDIILCCQ ERMKLHLDKA IAQLAANRAS
251 300
ENSP00000379263/1-490 QHELEKDLSD KQTAYRIDDK CHHLRNTSDG VGYFRGVERV DA-TVSVPES
ENSBTAP00000004942/1-490 QHELEKDLSD KQSAYRIDDK CHHLRNTSDG VSYFRGVERV DA-TVSVPES
ENSTTRP00000003452/1-490 QHELEKDLSD KQAACRIDDK CHHLRNTSDG VSYFCGVERV NA-MVSVPES
bmy_10728T0/1-491 QHELEKDLSD KQAAYRIDDK CHHLRNTSDG VSYFRGVERD AAHRVSVPES
BACU005227/1-489 QHELEKDLSG KQAAYRIDDK CHHLRNTSDG VSYFRGVERV DA-MVSVPES
301 350
ENSP00000379263/1-490 WAKFTDDNIL RSQSERAASA KLRDDIENLL VVTANEMWNQ FNKVNLSFTN
ENSBTAP00000004942/1-490 WAKFTDDNIL RSQSERAASA KLRDDIQNVL VVTANEMWNQ FNKVNLAFTN
ENSTTRP00000003452/1-490 WAKFTHDNIL RSQSERAASA KLRDDIQNLL VVTANEMWNQ FNKVNLAFTS
bmy_10728T0/1-491 WAKLTDDNIL RSQSERAASA KLRDDVQNLL VVTANEMWNQ FNKVNLAFTS
BACU005227/1-489 WAKLTDDNIL RSQSERAASA KLRDDVQNLL VVTANEMWNQ FNKVNLAFTS
351 400
ENSP00000379263/1-490 RIAETADAKN KIQTHLAKTL QEIFQTEMTI ESIKKAIKDK TAFLKVAQTR
ENSBTAP00000004942/1-490 RIAETADAKN KIQTHLAKTL QEIFQTEMTI ESIKKAIVEK SAFLKVAQTR
ENSTTRP00000003452/1-490 RIAETADAKN KIQIHLAKTL QEIFQTEMTI ESIKKAIEDK CAFLKVAQTR
bmy_10728T0/1-491 RIAETADAKN KIQIHLAKTL QEIFQTEMTI ESIKKAIKDK SAFLKVAQTR
BACU005227/1-489 RIAETADAKN KIQIHLAKTL QEIFQTEMTI ESIKKAIKDK SAFLKVAQTR
401 450
ENSP00000379263/1-490 LDERTRRPNI ELCRDMAQLR LVNEVHEVDD TIQTLQQRLR DAEDTLQSLV
ENSBTAP00000004942/1-490 LDERTRRPNI ELCRDMAQLR LVNEVYEVDD TIQTLQQRLR DAEDTLQSLA
ENSTTRP00000003452/1-490 LDERTRRPNI ELCRDTAQLR LVNEVYEVDD TIQTLQQRLR DAQDTLQSLV
bmy_10728T0/1-491 LDERTRRPNI ELCRDMAQLR LVNEVYEVDD TIQTLQQRLR DAEDTLQSLV
BACU005227/1-489 LDERTRRPNI ELCRDMAQLR LVNEVYEVDD TIQTLQQRLR DAEDTLQSLV
451 500
ENSP00000379263/1-490 HIKATLEYDL AVKANSLYID QEKCMSMRKS YPNTLRLVGF C
ENSBTAP00000004942/1-490 HTKATLEHDL AVKANSLYID QDKCMSMRRS FPSTLRLVGF C
ENSTTRP00000003452/1-490 HTKATLEHDL AVKANSLYID QEKCMSMRRS FPSTRRLVGF C
bmy_10728T0/1-491 HTKATLEYDL AVKANSLYID QEKCMSMRRS FPSARRLVGF C
BACU005227/1-489 HSKATLEHDL AVKANSLYID QEKCVSMRRS FPSARRLAGF -