KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:16 2014 Check: 00 .. Name: ENSP00000357603/1-530 Len: 823 Check: 5866 Weight: 1.00 Name: ENSTTRP00000005476/1-451 Len: 823 Check: 5655 Weight: 1.00 Name: ENSBTAP00000004943/1-516 Len: 823 Check: 1330 Weight: 1.00 Name: bmy_09742T0/1-750 Len: 823 Check: 7437 Weight: 1.00 Name: BACU004777/1-80 Len: 823 Check: 5224 Weight: 1.00 // 1 50 ENSP00000357603/1-530 MEGSSSYEVP SVAAADLEEG AG----QTRS LPATPSKDVH KGVGGIIFSS ENSTTRP00000005476/1-451 MEGCSSCKAA -CGAADPESG AG----QAGS KPASPSREAH EGVKGVILSS ENSBTAP00000004943/1-516 MEGSGSLSVP -C-------G AGDRESQAGS KPASASRDVH QGV---IFSS bmy_09742T0/1-750 MEGISSCKVP -C-------G AG----QARS KPASPSRDAH EGVKAVILSS BACU004777/1-80 MEGSSSCKVP -C-------G AG----QARS KPASPSRDTH EGVKAVILSS 51 100 ENSP00000357603/1-530 SPILDLSESG LCRLEEVFRI PSLQQLHLQR NALCVIPQDF FQLLPNLTWL ENSTTRP00000005476/1-451 S-VLDLSHSG LHHLA-IFKV LNLGQSPRQR NALCTVPKLF SQGLPNLTWL ENSBTAP00000004943/1-516 SAILDLSQSG LHHFGEIFKV PNLKQLHLQR NALCTIPKDF FQLLPNLSWL bmy_09742T0/1-750 SAILDLSQSG LHHLGEIFKV LNLRQ----- NALCTIPKDL FQWLPKLTWL BACU004777/1-80 SAILDLSQSG LHHLGEIFKV LNLRQLHLQQ NALCTIPKDF FQ-------- 101 150 ENSP00000357603/1-530 DLRYNRIKAL PSGIGAHQHL KTLLLERNPI KMLPVELGSV TTLKALNLRH ENSTTRP00000005476/1-451 HLRSNGITAP PPGVGCHKHL KTLLLERNPI KMLPVEL--- ---------- ENSBTAP00000004943/1-516 DLRFNRITAL PSGIGCHKHL KTLLLERNPI RMLPVELGSV TTLKALSLRH bmy_09742T0/1-750 DLRSNRITAL PSGIGCHEHL KTLLLERNPI KMLPVEL--- ---------- BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000357603/1-530 CPLEFPPQLV VQKGLVAIQR FLRMWAVEHS LPRNPTSQ-E APPVREMTLR ENSTTRP00000005476/1-451 ---------- ---------- ---------- ---------A ISPVKKMSVS ENSBTAP00000004943/1-516 CPLEFPPPLV VQRGLVAILT FLQICAADHE APHDGSPRVS VSPVKKMTVR bmy_09742T0/1-750 ---------- ---------- ---------- ---------- ---VKKMTVS BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000357603/1-530 DLPSPGLELS GDHASNQGAV NAQDPEGAVM KEKASFLPPV EKPDLSELRK ENSTTRP00000005476/1-451 EAPPPLVDLS AEREPNEEAI HSQEAEGTMV TEKAGFFPPV GKLDLRECRR ENSBTAP00000004943/1-516 DLPQPLLELS EEHVPNKETI RSQEPKGSMV TEKADFFPPV ETLDPHEPRR bmy_09742T0/1-750 ELPHPLLDLS EERVPNKETI HSQEAKGTML TEQADFFPPV ENLDLRERRR BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000357603/1-530 SADSSENWPS EEEIRRFWKL RQEIVEHVKA DVLGDQLLTR ELPPNLKAAL ENSTTRP00000005476/1-451 SSEPPEDWPS EEEIRRFWKL RQEIVENQQA EVLERQRLPA ELPPALTAVL ENSBTAP00000004943/1-516 STEPPEDWPS EEEIRRFWKL RQEIVENEQA GALGNQLLPA ELPPSLRAAL bmy_09742T0/1-750 STEPPEDWPS EEEIRRFWKL RQEIVGNEHA EVPESQRLPV ELPPALKAVL BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000357603/1-530 -NIEKELPKP RHVFRRKTAS SRSILPDLLS PYQMAIRAKR LEESRAAALR ENSTTRP00000005476/1-451 SDKEKRRPRP RPVFRTRTPS FKSVLPDPMA AGPGPHR--- ---------- ENSBTAP00000004943/1-516 SSRGKPLPRP RPLCRMKIPS FQGVLPELDS TRQALVRTSQ LGKSRGLALQ bmy_09742T0/1-750 RDRETRRPRP RPVFRTRTPS FKSVLPELAP RQQALGRTGL PEESGGLALR BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000357603/1-530 ELQEKQALME QQRREKRALQ EWRERAQRMR KRKE------ ---------- ENSTTRP00000005476/1-451 ---------- PEERDRRALQ EWRVLAQRMQ RRRE------ ---------- ENSBTAP00000004943/1-516 ELRERQAQ-E QSKRDKRLLQ EWRESTQVMR RRQE------ ---------- bmy_09742T0/1-750 ELPGKQAQLE QRRRDKRALQ EWRELAQRMK RRREVSATSR PHGGTWFSDG BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000357603/1-530 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005476/1-451 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004943/1-516 ---------- ---------- ---------- ---------- ---------- bmy_09742T0/1-750 EAFSTFPTLL VRAVREAWGP WRVCFRLLRW HPRVLRSGLT LHRRPAQAKG BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000357603/1-530 ---------- ---------- -ELSKLL--P PRRSMVASKI PSATDLIDNR ENSTTRP00000005476/1-451 ---------- ---------- -GLSHLP--T PRRNLVASKV PFATDLIGHE ENSBTAP00000004943/1-516 ---------- ---------- -EPGSLPAPP PRRNPGAAKI AFATDPRENK bmy_09742T0/1-750 RGPQRVGHEC AAPEAALVLA AVYSRIPETV SLRFQVASKI PFATDLIGNE BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000357603/1-530 KVPLNPPGKM KPSKEKSPQA SKEMSALQER NLEEKIKQHV LQMREQR-RF ENSTTRP00000005476/1-451 KIPMHSPGKL KQSKEK-LQA SEEMXXXXXX XXXXXXXXXX XXXXXXX-XX ENSBTAP00000004943/1-516 KTPKNSPGKA TQSKEK-PLT SQELGGLRGQ ILEETLKPQT QQLHARRSRF bmy_09742T0/1-750 KIPMHSPGKL KQSKEKSLQA SQEMSAFREE NLGEKLTQHI QQLQERRSRF BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000357603/1-530 HGQAPLEEMR KAAEDLEIAT ELQDEVLKLK LGLTLNKDRR RAALTGNLSL ENSTTRP00000005476/1-451 XXXXXXXXXX XXXXXXXXAR RLQDEVMKLE LRSTLNRNHQ GTALPGGLSL ENSBTAP00000004943/1-516 RGLAPLEDVG KAARDAEMAR RLHDEVLKLR LRSALNRNHQ CAALPRSLSL bmy_09742T0/1-750 RGSAPLEEIG RATQDLEIAR RLQDEVMKLK LRPTLNRNHQ CTALPGSLSL BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000357603/1-530 GLP------- ---------- ---------- ---------- ---------- ENSTTRP00000005476/1-451 GPT------- ---------- ---------- ---------- ---------- ENSBTAP00000004943/1-516 RPA------- ---------- ---------- ---------- ---------- bmy_09742T0/1-750 GPTFIKNLKK FTDTNDRVSL VRTEHLLTWK TGRPLAAFPG VAPMWGIDFG BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000357603/1-530 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005476/1-451 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004943/1-516 ---------- ---------- ---------- ---------- ---------- bmy_09742T0/1-750 VGLGGLLLRQ LGDPKAETTE AAGSTGPARG LLYSKRVWLL LAWVAGALWA BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000357603/1-530 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005476/1-451 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004943/1-516 ---------- ---------- ---------- ---------- ---------- bmy_09742T0/1-750 GSLPAVVCAL RCPRSLRVAS VAGASPSSTA ARGPAGAEQG SPGLAEARAV BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000357603/1-530 ---------- ---------- ---------- ---AAQPQNT FFNTKYGESG ENSTTRP00000005476/1-451 ---------- ---------- ---------- ---LLQPQNL FFNTNYEPAN ENSBTAP00000004943/1-516 ---------- ---------- ---------- ---VSRPQNI FFNPKY---- bmy_09742T0/1-750 NQHSTLPPCA PRGLNHRAAQ THRAAGRTPR PSAVPRPRAP FCCSRGCPPR BACU004777/1-80 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000357603/1-530 NVRRYQ---- ---------- --- ENSTTRP00000005476/1-451 VYRC------ ---------- --- ENSBTAP00000004943/1-516 ---------- ---------- --- bmy_09742T0/1-750 RGRCERASTW RVSAASAAGL TST BACU004777/1-80 ---------- ---------- ---