KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:16 2014 Check: 00 .. Name: ENSTTRP00000010074/1-589 Len: 727 Check: 7369 Weight: 1.00 Name: ENSP00000358060/1-718 Len: 727 Check: 4909 Weight: 1.00 Name: ENSBTAP00000004948/1-718 Len: 727 Check: 2360 Weight: 1.00 Name: bmy_11149T0/1-587 Len: 727 Check: 5962 Weight: 1.00 Name: BACU007226/1-727 Len: 727 Check: 6730 Weight: 1.00 // 1 50 ENSTTRP00000010074/1-589 ---------- ---------- ---------- ---------- ---------- ENSP00000358060/1-718 MALYQRWRCL RLQGLQACRL HTAVVSTPPR WLAERLGLFE ELWAAQVKRL ENSBTAP00000004948/1-718 MGLYQRCRRL RFPGLHACGL HTAAVPTPPH WLVERLGYFE ELWTAQVKRL bmy_11149T0/1-587 MGLYQRWRRL RIPGLQACGL HTAAVPTPPH WLVERLGLFE ELWTAQVKRL BACU007226/1-727 MGLYQRWRRL RIPGLQACGL HTAAVPTPPH WLVERLGLFE ELWTAQVKRL 51 100 ENSTTRP00000010074/1-589 ---------- ---------- ---------- ---------- ---------- ENSP00000358060/1-718 ASMAQKEPRT IKISLPGGQK IDAVAWNTTP YQLARQISST LADTAVAAQV ENSBTAP00000004948/1-718 ASMTQEEQRT IKISLPGGQK VDAVAWKTTP YQLAQQISSN LADTAVAAQV bmy_11149T0/1-587 ASMAQKEHRT IKISLPGGQK VDAVAWNTTP YQLAQQISSK LADTAVAAQV BACU007226/1-727 ASMAQKEHRT IKISLPGGQK VDAVAWNTTP YQLAQQISSK LADTAVAAQV 101 150 ENSTTRP00000010074/1-589 ---------- ---------- ---------V VWHSSTHVLG AAAERLLGAV ENSP00000358060/1-718 NGEPYDLERP LETDSDLRFL TFDSPEGKAV FWHSSTHVLG AAAEQFLGAV ENSBTAP00000004948/1-718 NGEPYDLERP LETDSDLRFL TFDSAQGKKV FWHSSTHVLG AAAEQLLGAV bmy_11149T0/1-587 NGEPYDLERP LETDSDLRFL TFDSAEGKAV FWHSSTHVLG AAAEQLLGAV BACU007226/1-727 NGEPYDLERP LETDSDLRFL TFDSAEGKAV FWHSSTHVLG AAAEQLLGAV 151 200 ENSTTRP00000010074/1-589 LCQGPSTGCG LYHDFFVGKE RTIKGSELPV LERICQELAA AAQPFRRLEA ENSP00000358060/1-718 LCRGPSTEYG FYHDFFLGKE RTIRGSELPV LERICQELTA AARPFRRLEA ENSBTAP00000004948/1-718 LCQGPSTECG FYHDFFLGKE RTVKGSELPV LERFCQELTA AAQPFRRLEA bmy_11149T0/1-587 LCQGPSTGCG FYHDFFLGKE RTIKGSELPV LERICQELAA AAQPFRRLEA BACU007226/1-727 LCQGPSTGCG FYHDFFLGKE RTIKGSELPV LERICQELAA AAQPFRRLEA 201 250 ENSTTRP00000010074/1-589 SQDQLRQLFK DNPFKLHLIE EKVTGXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000358060/1-718 SRDQLRQLFK DNPFKLHLIE EKVTGPTATV YGCGTLVDLC QGPHLRHTGQ ENSBTAP00000004948/1-718 SRAQLRQLFK DNPFKLRLIE EKVTGPTATV YGCGMLVDLC RGPHLRHTGQ bmy_11149T0/1-587 SQDQLRQLFK DNPFKLHLIE EKVTGPTATV YGCGMLVDLC RGPHLRHTGQ BACU007226/1-727 SQDQLRQLFK DNPFKLHLIE EKVTGPTATV YGCGMLVDLC RGPHLRHTGQ 251 300 ENSTTRP00000010074/1-589 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000358060/1-718 IGGLKLLSNS SSLWRSSGAP ETLQRVSGIS FPTTELLRVW EAWREEAELR ENSBTAP00000004948/1-718 IGGLKLLSNS SSVWKFPDAP ETLQRVSGIS FPTAEELRAW EEWREEAELR bmy_11149T0/1-587 IGGLKLLTNS SSLWRFSSTP ETLQRVSGIS FPTAEELRAW EEWRKEAELR BACU007226/1-727 IGGLKLLTNS SSLWRFSGAP ETLQRVSGIS FPTAEELRAW EEWREEAELR 301 350 ENSTTRP00000010074/1-589 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX AEYTRRGFSE ENSP00000358060/1-718 DHRRIGKEQE LFFFHELSPG SCFFLPRGTR VYNALVAFIR AEYAHRGFSE ENSBTAP00000004948/1-718 DHRRIGKEQE LFFFHELSPG SCFFLPRGTR VYNALVAFIK AEYTRRGFSE bmy_11149T0/1-587 DHRRIGKEQE LFFFHELSPG SCFFLPRGTR VYNVLVAFIR AEYTRRGFSE BACU007226/1-727 DHRRIGKEQE LFFFHELSPG SCFFLPRGTR VYNVLVAFIR AEYTRRGFSE 351 400 ENSTTRP00000010074/1-589 VKTPTLFSTK LWELSGHWEH YREDMFALQP PDSDSHAGSQ SDHSTSHPTG ENSP00000358060/1-718 VKTPTLFSTK LWEQSGHWEH YQEDMFAVQP PGSDRPPSSQ SDDSTRHITD ENSBTAP00000004948/1-718 VKTPTLFSAK LWELSGHWEH YREDMFALQP PGLDRPSSSQ SDHSASPHTD bmy_11149T0/1-587 VKTPTLFSTK LWELSGHWEH YREDMFALQP PGSDSHAGSQ SDHSTSHPTD BACU007226/1-727 VKTPTLFSTK LWELSGHWEH YREDMFALQP PGSDSHAGSQ SDHSTSHPAD 401 450 ENSTTRP00000010074/1-589 TLALKPMNCP AHCLMFAHRP RSWRELPLRL ADFGALHRAE ASGSLGGLTR ENSP00000358060/1-718 TLALKPMNCP AHCLMFAHRP RSWRELPLRL ADFGALHRAE ASGGLGGLTR ENSBTAP00000004948/1-718 TLALKPMNCP AHCLMFAHRP RSWRELPLRL ADFGALHRAE ASGSLGGLTR bmy_11149T0/1-587 TLALKPMNCP AHCLMFAHRP RSWRELPLRL ADFGALHRAE ASGSLGGLTR BACU007226/1-727 TLALKPMNCP AHCLMFAHRP RSWRELPLRL ADFGALHRAE ASGSLGGLTR 451 500 ENSTTRP00000010074/1-589 LRRFQQDDAH IFCAPDQLEA EIRGCLDFLR SVYTVLGFSF RLALSTRPSG ENSP00000358060/1-718 LRCFQQDDAH IFCTTDQLEA EIQSCLDFLR SVYAVLGFSF RLALSTRPSG ENSBTAP00000004948/1-718 LRCFQQDDAH IFCAPDQLEA EIRGCLDFLH SVYTILGFSF HMALSTRPSG bmy_11149T0/1-587 LRRFQQDDAH IFCAPDQLEA EIRGCLDFLR SVYTVLGFSF RLALSTRPSG BACU007226/1-727 LRRFQQDDAH IFCAPDQLEA EIRGCLDFLR SVYTVLGFSF RLALSTRPSG 501 550 ENSTTRP00000010074/1-589 FLGEPCLWDQ AEQVLQQALE EFGEPWDLNP GDGAFYGPKI DVHLRDALGR ENSP00000358060/1-718 FLGDPCLWDQ AEQVLKQALK EFGEPWDLNS GDGAFYGPKI DVHLHDALGR ENSBTAP00000004948/1-718 FLGEPCLWDQ AEQVLQQALE EFGAPWDISP GDGAFYGPKI DVHVRDALGR bmy_11149T0/1-587 FLGEPCLWDQ AEQVLQQALE EFGEPWDLNP GDGAFYGPKI DVHLRDALGR BACU007226/1-727 FLGEPCLWDQ AEQVLQQALE EFGEPWDLNP GDGAFYGPKI DVHLRDALGR 551 600 ENSTTRP00000010074/1-589 PHQCGTIQLD FQLPLRFDLQ YKGQAGALER PVLIHRAVLG SVERMLGVLA ENSP00000358060/1-718 PHQCGTIQLD FQLPLRFDLQ YKGQAGALER PVLIHRAVLG SVERLLGVLA ENSBTAP00000004948/1-718 PHQCGTIQLD FQLPLRFDLQ YKGQLGALER PVLIHRAVLG SVERMLGVLA bmy_11149T0/1-587 PHQCGTIQLD FQLPLRFDLQ YKG------- ----YRTL-- ---------- BACU007226/1-727 PHQCGTIQLD FQLPLRFDLQ YKGQAGALER PVLIHRAVLG SVERMLGVLA 601 650 ENSTTRP00000010074/1-589 ESCGGKWPLW LSPFQVVVIP VGTEQEEYAR E--------- AQRSLQAAGL ENSP00000358060/1-718 ESCGGKWPLW LSPFQVVVIP VGSEQEEYAK E--------- AQQSLRAAGL ENSBTAP00000004948/1-718 ESCGGKWPLW LSPFQVVVIP VGTEQEEYAR E--------- AQQSLRAAGL bmy_11149T0/1-587 -SC----PLF PWPME----- ---------- ---------- ---------- BACU007226/1-727 ESCGGKWPLW LSPFQVVVIP VGTEQEEYAR EVPVNDPLPQ AQRSLRAAGL 651 700 ENSTTRP00000010074/1-589 VGDLDADSGL TLGRRIRRAQ LAHYNFQFVV GQKEQSKRTV NIRTRDNRRL ENSP00000358060/1-718 VSDLDADSGL TLSRRIRRAQ LAHYNFQFVV GQKEQSKRTV NIRTRDNRRL ENSBTAP00000004948/1-718 VGDLDADSGL TLSRRIRRAQ LAHYNFQFVV GQREQSKRTV NIRTRDNRRL bmy_11149T0/1-587 ---------- ---------- ---------- ---------- ---------- BACU007226/1-727 VGDLDADSGL TLGRRIRRAQ LAHYNFQFVV GQKEQSKRTV NIRTRDNRRL 701 750 ENSTTRP00000010074/1-589 GEWDLAEAVQ RLLELQNTRV PNAEEIF ENSP00000358060/1-718 GEWDLPEAVQ RLVELQNTRV PNAEEIF ENSBTAP00000004948/1-718 GERDLAEAVQ RLLELQDTRV PNAEEIF bmy_11149T0/1-587 ---------- ---------- ------- BACU007226/1-727 GERDLAEAVQ RLLELQNTRV PNAEEIF