KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:17 2014 Check: 00 .. Name: ENSP00000290649/1-643 Len: 812 Check: 9025 Weight: 1.00 Name: ENSBTAP00000004952/1-646 Len: 812 Check: 3742 Weight: 1.00 Name: bmy_15082T0/1-620 Len: 812 Check: 6567 Weight: 1.00 Name: BACU001852/1-809 Len: 812 Check: 1196 Weight: 1.00 Name: ENSTTRP00000012852/1-558 Len: 812 Check: 7114 Weight: 1.00 // 1 50 ENSP00000290649/1-643 MPLLFLERFP --WP------ ---------- ---------- SLRTYT-G-- ENSBTAP00000004952/1-646 MPLLFLERFP --WP------ ---------- ---------- SLRTYT-GL- bmy_15082T0/1-620 MPLLFLERFP --WP------ ---------- ---------- SLRTYT-G-- BACU001852/1-809 MSVVPPNRSQ TGWPRGVNQF GNKYIQQTKP LTLERTINLY PLTNYTFGTK ENSTTRP00000012852/1-558 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000290649/1-643 ---------- ---------- ---------- ---------- LSGLALLGTI ENSBTAP00000004952/1-646 ---------- ---------- ---------- ---------- LSLLVLLGTG bmy_15082T0/1-620 ---------- ---------- ---------- ---------- LSGLALLGTI BACU001852/1-809 EPLYEKDSSV AARFQRMREE FDKIGMRRTV EGVLIVHEHR LPHVLLLQLG ENSTTRP00000012852/1-558 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000290649/1-643 ISAYRALSQP EA----GPGE PDQLTASLQP ---------- ---------- ENSBTAP00000004952/1-646 TWNVRSMNQV SA--GEGVCK EEVQTRPVEK ---------- ---------- bmy_15082T0/1-620 VSAYRALSQP EARPGPGPAE AEPVTAPVQP ---------- ---------- BACU001852/1-809 TTFFKL---P GGELNPGEDE VEGLKRLMTE ILGRQDGVLQ DWVIDDCIGN ENSTTRP00000012852/1-558 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000290649/1-643 ------EPPA PARPSAGGPR ARD------- ---------- ---------- ENSBTAP00000004952/1-646 ------DPDA GIHNASGLPK ANT------- ---------- ---------- bmy_15082T0/1-620 ------DPAA LVRPSTGGPR ARD------- ---------- ---------- BACU001852/1-809 WWRPNFEPPQ YPYIPAHITK PKEHKKLFLV QLQEKALFAV PKNYKLVAAP ENSTTRP00000012852/1-558 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000290649/1-643 ---------- ---------- ---------- VAQYLLSDSL FVW------- ENSBTAP00000004952/1-646 ---------- ---------- ---------- KHRYLLSHCI CVQ------- bmy_15082T0/1-620 ---------- ---------- ---------- VAQYLLSDSL FVW------- BACU001852/1-809 LFELYDNAPG YGPIISSLPQ LLSRAGQDVW VLDFTVHDNC IFWKSFLLGC ENSTTRP00000012852/1-558 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000290649/1-643 ----VLVNTA CCVLMLVAKL IQCIVFGPLR VSERQHLKDK FWNFIFYKFI ENSBTAP00000004952/1-646 ----VLVNTA CCILMLVAKL IQCIVFGPLR VSERQHLKDK FWNFIFYKFI bmy_15082T0/1-620 ----VLVNTA CCVLMLVAKL IQCIVFGPLR -----HLKDK FWNFIFYKFI BACU001852/1-809 QNLNVLVNTA CCVLMLVAKL IQCIVFGPLR VSERQHLKDK FWNFIFYKFI ENSTTRP00000012852/1-558 ----VLVNTA CCVLMLVAKL IQCIVFGPLR VSERQHLKDK FWNFIFYKFI 301 350 ENSP00000290649/1-643 FIFGVLNVQT VEEVVMWCLW FAGLVFLHLM VQLCKDRFEY LSFSPTTPMS ENSBTAP00000004952/1-646 FIFGVLNVQT VEEVVMWCLW FAGLVFLHLM VQLCKDRFEY LSFSPTTPMS bmy_15082T0/1-620 FIFGVLNVQT VEEVVMWCLW FAGLVFLHLM VQLCKDRFEY LSFSPTTPMS BACU001852/1-809 FIFGVLNVQT VEEVVMWCLW FAGLVFLHLM VQLCKDRFEY LSFSPTTPMS ENSTTRP00000012852/1-558 FIFGVLNVQT VEEVVMWCLW FAGLVFLHLM VQLCKDRFEY LSFSPTTPMS 351 400 ENSP00000290649/1-643 SHGRVLSLLV AMLLSCCGLA AVCSITGYTH GMHTLAFMAA ESLLVTVRTA ENSBTAP00000004952/1-646 SHGRVLSLLV AMLLSCCGLA VVCCVTGYTH GMHTLAFMAA ESLLVTVRTA bmy_15082T0/1-620 SHGRVLSLLI AMLLSCCGLA VVCCVTGYTH GMHTLAFMAA ESLLVTVRTA BACU001852/1-809 SHGRVLSLLI AMLLSCCGLA VVCCVTGYTH GMHTLAFMAA ESLLVTVRTA ENSTTRP00000012852/1-558 SHGRVLSLLI AMLLSCCGLA VVCCVTGYTH GMHTLAFMAA ESLLVTVRTA 401 450 ENSP00000290649/1-643 HVILRYVIHL WDLNHEGTWE GKGTYVYYTD FVMELTLLSL DLMHHIHMLL ENSBTAP00000004952/1-646 HVILRYVIHL WDLSHEGTWE GKGTYVYYTD FVMELTLLSL DLMHHIHMLL bmy_15082T0/1-620 HVILRYVIHL WDLNHEGTWE GKGTYVYYTD FVMELTLLSL DLMHHIHMLL BACU001852/1-809 HVILRYVIHL WDLNHEGTWE GKGTYVYYTD FVMELTLLSL DLMHHIHMLL ENSTTRP00000012852/1-558 HVILRYVIHL WDLNHEGTWE GKGTYVYYTD FVMELTLLSL DLMHHIHMLL 451 500 ENSP00000290649/1-643 FGNIWLSMAS LVIFMQLRYL FHEVQRRIRR HKNYLRVVGN MEARFAVATP ENSBTAP00000004952/1-646 FGNIWLSMAS LVIFMQLRYL FHEVQRRIRR HKNYLRVVGN MEARFAVATP bmy_15082T0/1-620 FGNIWLSMAS LVIFMQLRYL FHEVQRRIRR HKNYLRVVGN MEARFAVATP BACU001852/1-809 FGNIWLSMAS LVIFMQLRYL FHEVQRRIRR HKNYLRVVGN MEARFAVATP ENSTTRP00000012852/1-558 FGNIWLSMAS LVIFMQLRYL FHEVQRRIRR HKNYLRVVGN MEVRFAVATP 501 550 ENSP00000290649/1-643 EELAVNNDDC AICWDSMQAA RKLPCGHLFH NSCLRSWLEQ DTSCPTCRMS ENSBTAP00000004952/1-646 EELAVNNDDC AICWDSMQAA RKLPCGHLFH NSCLRSWLEQ DTSCPTCRMS bmy_15082T0/1-620 EELAVNNDDC AICWDSMQAA RKLPCGHLFH NSCLRSWLEQ DTSCPTCRMS BACU001852/1-809 EELAVNNDDC AICWDSMQAA RKLPCGHLFH NSCLRSWLEQ DTSCPTCRMS ENSTTRP00000012852/1-558 EELAVNNDDC AICWDSMQAA RKLPCGHLFH NSCLRSWLEQ DTSCPTCRMS 551 600 ENSP00000290649/1-643 LNIADNNRVR EEHQGENLDE NLVPVAAAEG RPRLNQHNHF FHFDGSRIAS ENSBTAP00000004952/1-646 LNIADNNRVR EDHPGENLDE NLVPVAAAEG RPRLNQHNHF FHFDGSRIAS bmy_15082T0/1-620 LNIADNNRVR EEHQGENLDE NLVPVAAAEG RPRLNQHNHF FHFDGSRIAS BACU001852/1-809 LNIADNNRVR EEHQGENLDE NLVPVAAAEG RPRLNQHNHF FHFDGSRIAS ENSTTRP00000012852/1-558 LNIADNNRVR EEHQGENLDE NLVPVAAAEG RPRLNQHNHF FHFDGSRIAS 601 650 ENSP00000290649/1-643 WLPSFSVEVM HTTNILGITQ ASNSQLNAMA HQIQEMFPQV PYHLVLQDLQ ENSBTAP00000004952/1-646 WLPSFSVEVM HTTNILGITQ ASNSQLNAMA HQIQEMFPQV PYHLVLQDLQ bmy_15082T0/1-620 WLPSFSVEVM HTTNILGITQ ASNSQLNAMA HQIQEMFPQV PYHLVLQDLQ BACU001852/1-809 WLPSFSVEVM HTTNILGITQ ASNSQLNAMA HQIQEMFPQV PYHLVLQDLQ ENSTTRP00000012852/1-558 WLPSFSVEVM HTTNILGITQ ASNSQLNAMA HQIQEMFPQV PYHLVLQDLQ 651 700 ENSP00000290649/1-643 LTRSVEITTD NILEGRIQVP FPTQRSDSIR PALNSPVERP SSDQEEGETS ENSBTAP00000004952/1-646 LTRSVEITTD NILEGRIQVP FPTQRSESIR PALNSPVERP NGEQEDGEAS bmy_15082T0/1-620 LTRSVEITTD NILEGRIQVP FPTQRSESIR PALNGPAERP NGEQEDGEAS BACU001852/1-809 LTRSVEITTD NILEGRIQVP FPTQRSESIR PALNGPAERP NGEQEDGEAS ENSTTRP00000012852/1-558 LTRSVEITTD NILEGRIQVP FPTQRSESIR PALNGPMERP NGEQEDGEAS 701 750 ENSP00000290649/1-643 AQTERVPLDL SPRLEETLDF GEVEVEPSEV EDFEARGSRF SKSADERQRM ENSBTAP00000004952/1-646 VQTERVPLDL SPRLEEVLDF GELEAEPSEG EDFEARGSRF SKSADERQRM bmy_15082T0/1-620 AQTERVPLDL SPRLEEALDF GELEAEPSEG EDFEARGSRF SK-------- BACU001852/1-809 AQTERVPLDL GPRLEEALDF GELEAEPSEG EDFEARGSRF SKSADERQRM ENSTTRP00000012852/1-558 TQTERVPLDL SPRLEEALDF GELEAEPSEG EDFEARGSRF SKSADERQRM 751 800 ENSP00000290649/1-643 LVQRKDELLQ QARKRFLNKS SEDDAASESF LPSEGASSDP VTLRRRMLAA ENSBTAP00000004952/1-646 LVQRKDDLLQ QARRRFLNRS SEDDSASESC LPSEGTTSDP VTLRRRMLAA bmy_15082T0/1-620 ---------- ----RFLSRS SEDDSASDSC LPSEGTTSDP MTLRRRMLAA BACU001852/1-809 LVQRKDDLLQ QARRRFLNRS SEDDSASDSC LPSEGTTSDP MTLRRRMLAA ENSTTRP00000012852/1-558 LVQRKDDLLQ QARRRFLNRS SEDDSASDSC LPSEGTTSDP MTLRRRMLAA 801 850 ENSP00000290649/1-643 AAERRLQKQQ TS ENSBTAP00000004952/1-646 AAERRLQKQQ AS bmy_15082T0/1-620 AAERRLQKQQ SS BACU001852/1-809 AAERRLQKQQ SS ENSTTRP00000012852/1-558 AAERRLQKQQ SS