KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:18 2014 Check: 00 .. Name: ENSP00000468785/1-655 Len: 1017 Check: 5736 Weight: 1.00 Name: ENSBTAP00000004954/1-642 Len: 1017 Check: 4968 Weight: 1.00 Name: ENSTTRP00000014711/1-607 Len: 1017 Check: 1281 Weight: 1.00 Name: bmy_09624T0/1-643 Len: 1017 Check: 4365 Weight: 1.00 Name: BACU017661/1-992 Len: 1017 Check: 9050 Weight: 1.00 // 1 50 ENSP00000468785/1-655 MAEDWLDCPA LGPGWKRREV FRKSGATCGR SDTYYQSPTG DRIRSKVELT ENSBTAP00000004954/1-642 MAEDWLDCPA LGPGWKRREV FRKSGATCGR SDTYYQSPTG DRIRSKVELT ENSTTRP00000014711/1-607 MAEDWLDCPA LGPGWKRREV FRKSGATCGR SDTYYQSPTG DRIRSKVELT bmy_09624T0/1-643 MAEDWLDCPA LGPGWKRREV FRKSGATCGR SDTYYQSPTG DRIRSKVELT BACU017661/1-992 MAEDWLDCPA LGPGWKRREV FRKSGATCGR SDTYYQSPTG DRIRSKVELT 51 100 ENSP00000468785/1-655 RYLGPACDLT LFDFKQGILC YPAPKAHPVA VASKKRKKPS RPAKTRKRQV ENSBTAP00000004954/1-642 RYLGPACDLT LFDFKQGVLC YPSPKAQSLA ITSRKRKKPS KPAKARKCQV ENSTTRP00000014711/1-607 RYLGPACDLT LFDFKQGILC YPAPKAHSLA VPSRKRKKPS KPAKAQKRQV bmy_09624T0/1-643 RYLGPACDLT LFDFKQGILC YPAPKAHSLA IPSRKRKKPS RPAKAQKRQV BACU017661/1-992 RYLGPACDLT LFDFKQGILC YPAPKAHSLA IPSRKRKKPS RPAKAQKRQV 101 150 ENSP00000468785/1-655 GPQSGEVRKE APRDETKADT DTAPASFPAP GCCENCGISF SGDGTQRQRL ENSBTAP00000004954/1-642 GPQKSEVRKE APRDDTKADT DTVPASLPAP GCCENCGISF SGDGTRRQRL ENSTTRP00000014711/1-607 GPSKSEVRKE APRDETKADA GTVPASLPAP GCCENCGISF SGDGTRRQRL bmy_09624T0/1-643 GPPKSEVRKE APRDETKADA DTAPASLPAP GCCENCGISF SGDGTRRQRL BACU017661/1-992 GPPKSEVRKE APRDETKADA DTAPASLPAP GCCENCGISF SGDGTRRQRL 151 200 ENSP00000468785/1-655 KTLCKDCRAQ RIAFNREQRM FKRVGCGECA ACQVTEDCGA CSTCLLQLPH ENSBTAP00000004954/1-642 KTLCKDCRAQ RIAFNREQRM FKRVGCGECT ACQVKEDCGA CSTCLLQLPH ENSTTRP00000014711/1-607 KTLCKDCRAQ RIAFNREQRM FKRVGCGECA ACQVTEDCGA CSTCLLQLPH bmy_09624T0/1-643 KTLCKDCRAQ RIAFNREQRM FKRVGCGECA ACQVTEDCGA CSTCLLQLPH BACU017661/1-992 KTLCKDCRAQ RIAFNREQRM FKRVGCGECA ACQVTEDCGA CSTCLLQLPH 201 250 ENSP00000468785/1-655 DVASGLFCKC ERRRCLRIVE RSRGCGVCRG CQTQEDCGHC PICLRPPRPG ENSBTAP00000004954/1-642 DVASGLFCKC ERRRCLRIVE RSRGCGVCRG CQTREDCGRC RVCLRPPRPG ENSTTRP00000014711/1-607 DVASGLFCKC ERRRCLRIVE RSRGCGVCRG CQTREDCGRC RVCFRPPRPG bmy_09624T0/1-643 DVASGLFCKC ERRRCLRIVE RSRGCGVCRG CQTREDCGRC RVCLRPPRPG BACU017661/1-992 DVASGLFCKC ERRRCLRIVE RSRGCGVCRG CQTREDCGRC RVCLRPPRPG 251 300 ENSP00000468785/1-655 LRRQWKCVQR RCLR------ ---------- ---------G KHARRKGGCD ENSBTAP00000004954/1-642 LRRQWKCVQR RCLRHLAHRL RRHHQRCQRR PPLAVAPPAG KHGRRRGGCD ENSTTRP00000014711/1-607 LRRQWRCVQR RCLR------ ---------- ---------G KHGRRRGGCD bmy_09624T0/1-643 LRRQWRCVQR RCLRHLAHRL RRHHQRCQRR PPLAVAPPAG KHGRRRGGCD BACU017661/1-992 LRRQWRCVQR RCLR------ ---------- ---------G KHGRRRGGCD 301 350 ENSP00000468785/1-655 SKMAARRR-P GAQPLPPPPP SQSPEPTEPH PRALAPSPPA EFIYYCVDED ENSBTAP00000004954/1-642 SKVVPRRRPP RAQSPPPPPP PQPPESPELH PRALAPSPPA EFIYYCVDED ENSTTRP00000014711/1-607 SKVAPRRRPP RTQPLPALPP SQPPESPELH PRALAPSPPA EFIYYCVDED bmy_09624T0/1-643 SKVAPRRRPP RTQPLPALPP SQPPESPELH PRALAPSPPA EFIYYCVDED BACU017661/1-992 SKVAPRRRPP RTQPLPALPP SQPPESPELH PRALAPSPPA EFIYYCVDED 351 400 ENSP00000468785/1-655 ELQPYTNRRQ NRKCGACAAC LRRMDCGRCD FCCDKPKFGG SNQKRQKCRW ENSBTAP00000004954/1-642 ELQPYTNRRQ NRKCGTCAAC LRRMDCGHCD FCCDKPKFGG SNQKRQKCRW ENSTTRP00000014711/1-607 ELQPYTNRRQ NRKCGACAAC LRRMDCGHCD FCCDKPKFGG SNQKRQKCRW bmy_09624T0/1-643 ELQPYTNRRQ NRKCGACAAC LRRMDCGHCD FCCDKPKFGG SNQKRQKCRW BACU017661/1-992 ELQPYTNRRQ NRKCGACAAC LRRMDCGHCD FCCDKPKFGG SNQKRQKCRW 401 450 ENSP00000468785/1-655 RQCLQFAMKR LLPSVWSESE DGAGSPPPYR RRKRPSSARR HHLGPTLKPT ENSBTAP00000004954/1-642 RQCLQFAMKR LLPSVWAGSE DGASPPPAHP RRKRPGSTRR PHLGQTLKPP ENSTTRP00000014711/1-607 RQCLQFAMKR LLPIVWASFE DGAGPPAPYX XXXXXXXXXX XXXXXXXXXX bmy_09624T0/1-643 RQCLQFAMKR LLPSVWAGSE DGAGPPAPYP RRKRPGSARR PRLGQTSKLP BACU017661/1-992 RQCLQFAMKR LLPSVWAGSE DGAGPPAPYP RRKRPGSARR PRLGQTPKPP 451 500 ENSP00000468785/1-655 LATRTAQPDH TQAPTKQEAG GGFVLPPPGT DLVFLREGAS SPVQVPGPVA ENSBTAP00000004954/1-642 LATPAAQPDR AQTPVKEEAG SGFVLPPPGT DLVFLREGAS SPVQVPGPAP ENSTTRP00000014711/1-607 XXXXMAQPDR AQTPVKQEAG SGFVLPPPGT DLVFLREGAS SPVQVPGPAP bmy_09624T0/1-643 LATPMAQPDR ARTPVKQEAG SGFVLPPPGT DLVFLREGAS SPVQVPGPAP BACU017661/1-992 LATPMAQPDR ARTPVKQEAG SGFVLPPPGT DLVFLREGAS SPVQVPGPAP 501 550 ENSP00000468785/1-655 ASTEALLQEA QCSGLSWVVA LPQVKQEKAD TQDEWTPGTA VLTSPVLVPG ENSBTAP00000004954/1-642 ASTETRLQEA QCPGLSWVVA LPQVKQEKAD AQEDWTPGTA ILTSPVLLPG ENSTTRP00000014711/1-607 ASTAALLQEA QCPGLSWVVA LPQVKQEKAD AQEDWTPGTA ILTSPVLLPG bmy_09624T0/1-643 ASTAALLQEA QCPGLSWVVA LPQVKQEKAD AQEDWTPGTA ILTSPVLLPG BACU017661/1-992 ASTAALLQEA QCPGLSWVVA LPQVKQEKAD AQEDWTPGTA ILTSPVLLPG 551 600 ENSP00000468785/1-655 CPSKAVDPGL PSVKQEPPDP EEDK-EENKD DSASKLAPEE EAGGAGTPVI ENSBTAP00000004954/1-642 CPSKAVDPGL PAVKQEPPDP EEDK-DDNKA DSTSDLPPEE EAGGAGTPVI ENSTTRP00000014711/1-607 CPSKAVDPGL PPVKQEPPDP EEDKEEENKD DPTADLAPEE EAGGAGTPVI bmy_09624T0/1-643 CPSKAVDPGL PPVKQEPPDP EEDKEEENKD DSTSDLAPEE EAGGAGTPVI BACU017661/1-992 CPSKAVDPGL PPVKQEPPDP EEDKEEENKD DSTSDLAPEE EAGGAGTPVR 601 650 ENSP00000468785/1-655 TE-------- ---------- ---------- ---------- ---------- ENSBTAP00000004954/1-642 TE-------- ---------- ---------- ---------- ---------- ENSTTRP00000014711/1-607 TE-------- ---------- ---------- ---------- ---------- bmy_09624T0/1-643 TE-------- ---------- ---------- ---------- ---------- BACU017661/1-992 AKPPKGQGAE HHLERIRRSH QKHHAILASI KSNERDRLKA EWDQHNDRKF 651 700 ENSP00000468785/1-655 IFSLGGTRFR DT-------- ---------- ---------- ---------- ENSBTAP00000004954/1-642 IFSLGGTRLR DT-------- ---------- ---------- ---------- ENSTTRP00000014711/1-607 IFSLGGTRLR DT-------- ---------- ---------- ---------- bmy_09624T0/1-643 IFSLGGTRLR DT-------- ---------- ---------- ---------- BACU017661/1-992 VDSLVKARVK DAMQGFIINT EERRNKLREL LASEENEYFI EMQLKEETIE 701 750 ENSP00000468785/1-655 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004954/1-642 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014711/1-607 ---------- ---------- ---------- ---------- ---------- bmy_09624T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU017661/1-992 EKKDRMRDKV RLLREKKEKE RQDFVAEKLD QQFRERCEEL RVELCCIHQK 751 800 ENSP00000468785/1-655 AVWLPSLQGR HSGREDG--- -------CKV WE----TEDT VEPTSTSWNP ENSBTAP00000004954/1-642 AVWLPRLRKL LAVNENE--- ---------- ---------- ---------- ENSTTRP00000014711/1-607 AVWLPRSKDL K--------- ---------- ---------- ---------- bmy_09624T0/1-643 AVWLPRGA-- ---------- -------GQM WA-------- ---------- BACU017661/1-992 AVSKERKAQI AFNEELKRQK LVEEQMFSKL WEEDRLAKEK REAEEARRQR 801 850 ENSP00000468785/1-655 RGWPGTHVSL SPPPASM--- ---------- ---------- ---MWVSCRR ENSBTAP00000004954/1-642 -----YFTEL QLKEEAL--- ---------- ---------- ---------- ENSTTRP00000014711/1-607 ---------- ---------- ---------- ---------- ---------- bmy_09624T0/1-643 -------LSL ESTLSVL--- ---------- ---------- ---------- BACU017661/1-992 ELMENTRLGL NAQITSIQAQ RQAARRLKEE EARLVEDMIR EQKIYHQYLA 851 900 ENSP00000468785/1-655 SW-------- ---------- ---------- ---------- ---------- ENSBTAP00000004954/1-642 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014711/1-607 ---------- ---------- ---------- ---------- ---------- bmy_09624T0/1-643 AW-------- ---------- ---------- ---------- ---------- BACU017661/1-992 QWHKEEKAQE KELDRMLEKE MEKKFAEKGK ELRLEKESRK QLLNEVMCTR 901 950 ENSP00000468785/1-655 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004954/1-642 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014711/1-607 ---------- ---------- ---------- ---------- ---------- bmy_09624T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU017661/1-992 KLQVQEKLQR KAKEQEERAM EQERINEGLK ELNREEREDF TRRSSLAQEY 951 1000 ENSP00000468785/1-655 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004954/1-642 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014711/1-607 ---------- ---------- ---------- ---------- ---------- bmy_09624T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU017661/1-992 RKQLQLQMCS QQQAREAEKE EERREFEAGV TAEKNFQDKI QEILSTHQVL 1001 1050 ENSP00000468785/1-655 ---------- CPSSQS- ENSBTAP00000004954/1-642 ---------- ------- ENSTTRP00000014711/1-607 ---------- KPGARKQ bmy_09624T0/1-643 ---------- CSGR--- BACU017661/1-992 PQNIHPMRRA CPNKLPP