KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:21 2014 Check: 00 .. Name: ENSTTRP00000010894/1-724 Len: 945 Check: 6117 Weight: 1.00 Name: bmy_12265T0/1-759 Len: 945 Check: 5145 Weight: 1.00 Name: ENSBTAP00000004977/1-808 Len: 945 Check: 409 Weight: 1.00 Name: ENSP00000441032/1-724 Len: 945 Check: 7319 Weight: 1.00 Name: BACU000584/1-835 Len: 945 Check: 7358 Weight: 1.00 // 1 50 ENSTTRP00000010894/1-724 ---------- ---------- ---------M F--------- ---------- bmy_12265T0/1-759 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004977/1-808 ---------- ---------- -------MAE FLPLLPCTPL LTQDVCAQDS ENSP00000441032/1-724 ---------- ---------- ---------M F--------- ---------- BACU000584/1-835 MHGVKRSKLG PANTETKTPN RAGRALPMAE FLPLLPCAPL LTQDGSAQDS 51 100 ENSTTRP00000010894/1-724 ---------- ---------- ---------- ---------- ---------- bmy_12265T0/1-759 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004977/1-808 RVPPAKEPSQ EAQGGRVHGP APKRWKLLEV PTIQITPASN GESPPCTPPA ENSP00000441032/1-724 ---------- ---------- ---------- ---------- ---------- BACU000584/1-835 PVPPAEWQSQ QPHGGRAQDL APKPWRLPEV PSIQIMPASD GESTPCTPPP 101 150 ENSTTRP00000010894/1-724 ---------- -------DTT PHSGRSTPSS SPSLRKRLQL LPPSRPPPEP bmy_12265T0/1-759 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004977/1-808 QRLQLPRTPD RESSPQDSTT PHSGRSTPSS SPSLRKRLQL LPTSRPPPEP ENSP00000441032/1-724 ---------- -------DTT PHSGRSTPSS SPSLRKRLQL LPPSRPPPEP BACU000584/1-835 QRLQLPTTPD LESSPQDSTT PHSGRSTPSS SPSLRKRLQL LPPSRPPPEP 151 200 ENSTTRP00000010894/1-724 EPGTMVEKGS DSSSEKGGVP GAPGTQSLGS RNFIRNSKKM QSWYSMLSPT bmy_12265T0/1-759 ----MVEKGS DSSSEKGGVP GTPSTQSLGS RNFIXGWEKM QSWYSMLSPT ENSBTAP00000004977/1-808 EPGTMVEKGS DSSSEKGGVP GTPSTQSLGS RNFIRNSKKM QSWYSMLSPT ENSP00000441032/1-724 EPGTMVEKGS DSSSEKGGVP GTPSTQSLGS RNFIRNSKKM QSWYSMLSPT BACU000584/1-835 EPGTMVEKGS DSSSEKGGVP GTPSTQSLGS RNFIRNSKKM QSWYSMLSPT 201 250 ENSTTRP00000010894/1-724 YKQRNEDFRK LFSKLPEAER LIV------- ---------- ---------- bmy_12265T0/1-759 YKQRNEDFRK LFSKLPEAER LIVGESLPAR PGAPSSALPT LPHAPAQRPG ENSBTAP00000004977/1-808 YKQRNEDFRK LFSKLPEAER LIV------- ---------- ---------- ENSP00000441032/1-724 YKQRNEDFRK LFSKLPEAER LIV------- ---------- ---------- BACU000584/1-835 YKQRNEDFRK LFSKLPEAER LIV------- ---------- ---------- 251 300 ENSTTRP00000010894/1-724 ---------- ------DYSC ALQREILLQG RLYLSENWIC FYSNIFRWET bmy_12265T0/1-759 QPCDSGVCLS LPSAASDYSC ALQREILLQG RLYLSENWIC FYSNIFRWET ENSBTAP00000004977/1-808 ---------- ------DYSC ALQREILLQG RLYLSENWIC FYSNIFRWET ENSP00000441032/1-724 ---------- ------DYSC ALQREILLQG RLYLSENWIC FYSNIFRWET BACU000584/1-835 ---------- ------DYSC ALQREILLQG RLYLSENWIC FYSNIFRWET 301 350 ENSTTRP00000010894/1-724 TISIQLKEVT CLKKEKTAKL IPNAIQICTE NEKHFFTSFG ARDRCFLLIF bmy_12265T0/1-759 TISIQLKEVT CLKKEKTAKL IPNAIQICTE NEKHFFTSFG ARDRCFLLIF ENSBTAP00000004977/1-808 TISIQLKEVT CLKKEKTAKL IPNAIQICTE NEKHFFTSFG ARDRCFLLIF ENSP00000441032/1-724 TISIQLKEVT CLKKEKTAKL IPNAIQICTE SEKHFFTSFG ARDRCFLLIF BACU000584/1-835 TISIQLKEVT CLKKEKTAKL IPNAIQICTE NEKHFFTSFG ARDRCFLLIF 351 400 ENSTTRP00000010894/1-724 RLWQNALLEK TLSPRELWHL VHQCYGSELG LTSEDEDYVC PLQLNGLGSP bmy_12265T0/1-759 RLWQNALLEK TLSPRELWHL VHQCYGSELG LTSEDEDYVC PLQLNGLGSP ENSBTAP00000004977/1-808 RLWQNALLEK TLSPRELWHL VHQCYGSELG LTSEDEDYVC PLQLNGLGSP ENSP00000441032/1-724 RLWQNALLEK TLSPRELWHL VHQCYGSELG LTSEDEDYVS PLQLNGLGTP BACU000584/1-835 RLWQNALLEK TLSPRELWHL VHQCYGSELG LTSEDEDYVC PLQLNGLGSP 401 450 ENSTTRP00000010894/1-724 KEVGDVIALS DITSSGAADH SQEPSPAGSR RGRITPSLSR ASSDADHGXX bmy_12265T0/1-759 KEVGDVIALS DITSSGAADH SQEPSPAGSR RGRITPSLSR ASSDADHGAE ENSBTAP00000004977/1-808 KDVGDVIALS DITPSGAADH SQEPSPAGSR RGRITPNLSR ASSDADHGAE ENSP00000441032/1-724 KEVGDVIALS DITSSGAADR SQEPSPVGSR RGHVTPNLSR ASSDADHGAE BACU000584/1-835 KEVGDVIALS DITSSGAADH SQEPSPAGSR RGRITPSLSR ASSDADHGAE 451 500 ENSTTRP00000010894/1-724 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12265T0/1-759 EDKEEQTDSQ PDASSGQTVT PVAEPPSSEP IPPDGPASLG PLDLLPSEEL ENSBTAP00000004977/1-808 EDKEEQTDSQ PDASSSQTVT PVAEPPSAEP TPPDGPTSLG PLDLLPSEEL ENSP00000441032/1-724 EDKEEQVDSQ PDASSSQTVT PVAEPPSTEP TQPDGPTTLG PLDLLPSEEL BACU000584/1-835 EDKEEQTDSQ PDASSGQTVT PVAEPPSSEP TPPDGPASLG PLDLLPSEEL 501 550 ENSTTRP00000010894/1-724 XXXXXXXXXX XXXXXDLAAL LPDLSGRLLI NSVFHVGAER LQQMLFSDSP bmy_12265T0/1-759 LTDTT----- -----DLAAL LPDLSGRLLI NSVFHVGAER LQQMLFSDSP ENSBTAP00000004977/1-808 LTDTSNSSSS TGEEADLAAL LPDLSGRLLI NSVFHVGAER LQQMLFSDSP ENSP00000441032/1-724 LTDTSNSSSS TGEEADLAAL LPDLSGRLLI NSVFHVGAER LQQMLFSDSP BACU000584/1-835 LTDTSNSSSS TGEEADLAAL LPDLSGRLLI NSVFHVGAER LQQMLFSDSP 551 600 ENSTTRP00000010894/1-724 FLQGFLQQCK FTDVTLSPWS GDSECRQRRV LTYTIPISNP LGPKSASVVE bmy_12265T0/1-759 FLQGFLQQCK FTDVTLSPWS GDSKCHQRRV LTYTVPISNP LGPKSASVVE ENSBTAP00000004977/1-808 FLQDFLQQCK FTDVTLSPWS GDSKCHQRRV LTYTIPISNP LGPKSASVVE ENSP00000441032/1-724 FLQGFLQQCK FTDVTLSPWS GDSKCHQRRV LTYTIPISNP LGPKSASVVE BACU000584/1-835 FLQGFLQQCK FTDVTLSPWS GDNKCHQRRV LTYTVPISNP LGPKSASVVE 601 650 ENSTTRP00000010894/1-724 TQTLFRHGPQ AGGCVVDSEV LTQGIPYQDY FYTAHRYCIL GLARNKARLR bmy_12265T0/1-759 TQ-VFRRSPQ AGGCVVDSEV LTQGIPYQDY FYTAHRYCIL GLARNKARLR ENSBTAP00000004977/1-808 TQTLFRRGPQ AGGCVVDSEV LTQGIPYQDY FYTAHRYCIL GLARNKARLR ENSP00000441032/1-724 TQTLFRRGPQ AGGCVVDSEV LTQGIPYQDY FYTAHRYCIL GLARNKARLR BACU000584/1-835 TQTLFRRGPQ AGGCVVDSEG LTQGIPYQDY FYTAHRYCIL GLARNKARLR 651 700 ENSTTRP00000010894/1-724 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX------ ---------- bmy_12265T0/1-759 VSSEIRYRKQ PWSLVKSLIE KNSWSGIEDY FHHLGRGQGS SQGHRQVRGL ENSBTAP00000004977/1-808 VSSEIRYRKQ PWSLVKSLIE KNSWSGIEDY FHHL------ ---------- ENSP00000441032/1-724 VSSEIRYRKQ PWSLVKSLIE KNSWSGIEDY FHHL------ ---------- BACU000584/1-835 VSSEIRYRKQ PWSLVKSLIE KNSWSGIEDY FHHL------ ---------- 701 750 ENSTTRP00000010894/1-724 ---------- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12265T0/1-759 AGCRHAGPSL VSAERELAKA EKLSLEEGGK DARGLLSGLR RRKRPLSWRG ENSBTAP00000004977/1-808 ---------- ---ERELAKA EKLSLEEGGK DTRGLLSGLR RRKRPLSWRA ENSP00000441032/1-724 ---------- ---ERELAKA EKLSLEEGGK DARGLLSGLR RRKRPLSWRA BACU000584/1-835 ---------- ---ERELAKA EKLSLEEGGK DARGLLSGLR RRKRPLSWRG 751 800 ENSTTRP00000010894/1-724 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX--- ---------- bmy_12265T0/1-759 HGDGPQHPDP DPCARAGMHP SDPGQREIGH TFSLSGPQFA NNSSPVRGCA ENSBTAP00000004977/1-808 HGDGTPHPDP DPCARTGMHT SGSLSSRFSE PSMDQGP--- ---------- ENSP00000441032/1-724 HGDGPQHPDP DPCARAGIHT SGSLSSRFSE PSVDQGP--- ---------- BACU000584/1-835 HGDGPQHPDP DPCARAGMHP SGSLSSRFSE PSVDQGP--- ---------- 801 850 ENSTTRP00000010894/1-724 --------XX XX-------- -----XXXXX XXXXXICVSL IVLIALNVLL bmy_12265T0/1-759 VRSALGCRGR GLARTGWAAL ISLSPPLCLL R----ICVSL IVLIALNVLL ENSBTAP00000004977/1-808 --------GA GT-------- -----PSALV L----ICVSL IVLIALNVLL ENSP00000441032/1-724 --------GA GI-------- -----PSALV LISIVICVSL IILIALNVLL BACU000584/1-835 --------GA GI-------- -----PSALV L----ISIVL IVLIALNVLL 851 900 ENSTTRP00000010894/1-724 FYRLWSLERT AHTFESWHSL ALAKGKFPQT ATEWAEILAL QKQFHSVEVH bmy_12265T0/1-759 FYRLWSLERT AHTFESWHSL ALAKGKFPQT ATEWAEILAL QKQFHSV--- ENSBTAP00000004977/1-808 FYRLWSLERT AHTFESWHSL ALAKGKFPQT ATEWAEILAL QKQFHSVDVH ENSP00000441032/1-724 FYRLWSLERT AHTFESWHSL ALAKGKFPQT ATEWAEILAL QKQFHSVEVH BACU000584/1-835 FYRLWSLERT AHTFESWHSL ALAKGKFPQT ATEWAEILAL QKQFHSVEVH 901 950 ENSTTRP00000010894/1-724 KWRQILRASV ELLDEMKFSL EKLHQGITIS DPPFDSQPRS DDSFS bmy_12265T0/1-759 ---------- ----EMKFSL EKLHQGITIS DPPFDSQPRS DDSFS ENSBTAP00000004977/1-808 KWRQILRASV ELLDEMKFSL EKLHQGITVS DPPFDSQPQP DDSFS ENSP00000441032/1-724 KWRQILRASV ELLDEMKFSL EKLHQGITVS DPPFDTQPRP DDSFS BACU000584/1-835 KWRQILRASV ELLDEMKFSL EKLHQGITIS DPPFDSQPRS DDSFS