KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:22 2014 Check: 00 .. Name: ENSP00000248594/1-780 Len: 784 Check: 9859 Weight: 1.00 Name: ENSBTAP00000004985/1-755 Len: 784 Check: 6494 Weight: 1.00 Name: ENSTTRP00000000733/1-751 Len: 784 Check: 1739 Weight: 1.00 Name: bmy_04353T0/1-412 Len: 784 Check: 5047 Weight: 1.00 Name: BACU012287/1-784 Len: 784 Check: 7733 Weight: 1.00 // 1 50 ENSP00000248594/1-780 MEQVEILRKF IQRVQAMKSP DHNGEDNFAR DFMRLRRLST KYRTEKIYPT ENSBTAP00000004985/1-755 ---------- ---------- -------FSF DFKRLRRLST KYRTEKIYPT ENSTTRP00000000733/1-751 ---------- ---------- ---------- ---RLRRLST KYRTEKIYPT bmy_04353T0/1-412 ---------- ---------- ---------- ---------- ---------- BACU012287/1-784 MEQVEILRKF IQRVQAMKSP DHNGEDNFAR DFMRLRRLST KYRTEKIYPT 51 100 ENSP00000248594/1-780 ATGEKEENVK KNRYKDILPF DHSRVKLTLK TPSQDSDYIN ANFIKGVYGP ENSBTAP00000004985/1-755 ATGEKEENVK KNRYKDILPF DHSRVKLTLK TPSQDSDYIN ANFIKGVYGP ENSTTRP00000000733/1-751 ATGEKEENVK KNRYKDILPF DHSRVKLTLK TPSQDSDYIN ANFIKGVYGP bmy_04353T0/1-412 ---------- ---------- ---------- ---------- ---------- BACU012287/1-784 ATGEKEENVK KNRYKDILPF DHSRVKLTLK TPSQDSDYIN ANFIKGVYGP 101 150 ENSP00000248594/1-780 KAYVATQGPL ANTVIDFWRM IWEYNVVIIV MACREFEMGR KKCERYWPLY ENSBTAP00000004985/1-755 KAYVATQGPL ANTVIDFWRM IWEYNVVIIV MACREFEMGR KKCERYWPLF ENSTTRP00000000733/1-751 KAYVATQGPL ANTVIDFWRM IWEYNVVIIV MACREFEMGR XXXXXXXXXX bmy_04353T0/1-412 ---------- ---------- ---------- ---------- ---------- BACU012287/1-784 KAYVATQGPL ANTVIDFWRM IWEYNVVIIV MACREFEMGR KKCERYWPLY 151 200 ENSP00000248594/1-780 GEDPITFAPF KISCEDEQAR TDYFIRTLLL EFQNESRRLY QFHYVNWPDH ENSBTAP00000004985/1-755 GEDPITFAPF KISCEAEQAR TDYFIRTLLL EFQNESRRLY QFHYVNWPDH ENSTTRP00000000733/1-751 XXXXXXXXXX XXXXEAEQAR TDYFIRTLLL EFQNESRRLY QFHYVNWPDH bmy_04353T0/1-412 ---------- ---------- ---------- ---------- ---------- BACU012287/1-784 GEDPITFAPF KISCEAEQAR TDYFIRTLLL EFQNESRRLY QFHYVNWPDH 201 250 ENSP00000248594/1-780 DVPSSFDSIL DMISLMRKYQ EHEDVPICIH CSAGCGRTGA ICAIDYTWNL ENSBTAP00000004985/1-755 DVPSSFDSIL DMISLMRKYQ EHEDVPICIH CSAGCGRTGA ICAIDYTWNL ENSTTRP00000000733/1-751 DVPSSFDSIL DMISLMRKYQ EHEDVPICIH CSAGCGRTGA ICAIDYTWNL bmy_04353T0/1-412 ---------- ---------- ---------- ---------- ---------- BACU012287/1-784 DVPSSFDSIL DMISLMRKYQ EHEDVPICIH CSAGCGRTGA ICAIDYTWNL 251 300 ENSP00000248594/1-780 LKAGKIPEEF NVFNLIQEMR TQRHSAVQTK EQYELVHRAI AQLFEKQLQL ENSBTAP00000004985/1-755 LKAGKIPEEF NVFNLIQEMR TQRHSAVQTK EQYELVHRAI AQLFEKQLQL ENSTTRP00000000733/1-751 LKAGXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04353T0/1-412 ---------- ---------- ---------- ---------- ---------- BACU012287/1-784 LKAGKIPEEF NVFNLIQEMR TQRHSAVQTK EQYELVHRAI AQLFEKQLQL 301 350 ENSP00000248594/1-780 YEIHGAQKIA DGVNEINTEN MVSSIEPEKQ DSPPPKPPRT RSCLVEGDAK ENSBTAP00000004985/1-755 YEIHGTQKIT DGVNEVNTEN MISSTDHDKQ DSPPPKPPRT RSCLVEGDAK ENSTTRP00000000733/1-751 XXXXXXXXNA DGVNEINTEN MVSSIDPDKQ DSPPPKPPRT RSCLVEGDAK bmy_04353T0/1-412 ---------- ---------- ---------- ---------- --CLVEGDAK BACU012287/1-784 YEIHGAQKIA DGVNEINTEN MVSSIDPDKQ DSPPPKPPRT RSCLVEGDAK 351 400 ENSP00000248594/1-780 EEILQPPEPH PVPPILTPSP PSAFPTVTTV WQDNDRYHPK PVLHMVSSEQ ENSBTAP00000004985/1-755 EEILQPPEPH PVPPILTPSP PSAFPTVTTV WQDNDRYHPK PVLHMVSSEQ ENSTTRP00000000733/1-751 EEILQPPEPH PVPPILTPSP PSAFPTVTTV WQDNDRYHPK PVLHVVSSEQ bmy_04353T0/1-412 EEILQPPEPH PVPPILTPSP PSAFPTVTTV WQDNDRYHPK PVLHVVSSEQ BACU012287/1-784 EEILQPPEPH PVPPILTPSP PSAFPTVTTV WQDNDRYHPK PVLHVVSSEQ 401 450 ENSP00000248594/1-780 HSADLNRNYS KSTELPGKNE STIEQIDKKL ERNLSFEIKK VPLQEGPKSF ENSBTAP00000004985/1-755 PSTDLNRNYS KSMELTGKNE STIDQIDKKL ERNLSFEIKK VPLQEGPRSF ENSTTRP00000000733/1-751 HSTDLNRNYN KSTELTGKNE STVEQIDKKL ERNLSFEIKK VPLQEGPKSF bmy_04353T0/1-412 HSTDLNRNYN KSTELTGKNE STVEQIDKKL ERNLSFEIKK VPLQEGPKSF BACU012287/1-784 HSTDLNRNYN KSTELTGKNE STVEQIDKKL ERNLSFEIKK VPLQEGPKSF 451 500 ENSP00000248594/1-780 DGNTLLNRGH AIKIKS--AS PCIADKISKP QELSS-DLNV GDTSQNSCVD ENSBTAP00000004985/1-755 DGNTLLNRGH AIKIKSASAS PCTVDKISKS QELSSRDLKV DDISQNSCVD ENSTTRP00000000733/1-751 EGNTLLNRGH AIKIKSASAS PCTIDKVFKS QELNSRDLKI DGISQNSCVD bmy_04353T0/1-412 EGNTLLNRGH AIKIKSALAS PCTIDKIFKS QELNSRDLKI DDISQNSCVD BACU012287/1-784 EGNTLLNRGH AIKIKSASAS PCTIDKIFKS QELNSRDLKI DDISQNSCVD 501 550 ENSP00000248594/1-780 CSVTQSNKVS VTPPEESQ-N SDTPPRPDRL PLDEKGHVTW SFHGPENAIP ENSBTAP00000004985/1-755 CNATQSNKDP IILPEASQKN SDTPPRPDHL PLDGKGHLTW SFHGPENTLP ENSTTRP00000000733/1-751 CNATQSNKAP VILPEESQKN SDTPPRPDCL PLDEKGHAPW SFHGPENTLP bmy_04353T0/1-412 CNATQSNKAP VILPEESQKN SDTPPRPDRL PLDEKGHAPW SFHGPENPLP BACU012287/1-784 CNATQSNKAP VILPEESQKN SDTPPRPDRL PLDEKGHAPW SFHGPENTLP 551 600 ENSP00000248594/1-780 IPDLSEGNSS DINYQTRKTV SLTPSPTTQV ETPDLVDHDN TSPLFRTPLS ENSBTAP00000004985/1-755 MPDSSEGKSS DIHCQTMKTV SSTPSPTIQV ETHDLADHHD SSPLFRAPLS ENSTTRP00000000733/1-751 MPDSSEGKSS DTHCQTMKTG SSTPSPTTQL ATHDLTDHHN SSPLFRAPLS bmy_04353T0/1-412 MPDSSEGKSS DTHCQTMKTG SSTPSPTTQL ATHDLTDHHN SSPLFRAPLS BACU012287/1-784 MPDSSEGKSS DTHCQTMKTG SSTPSPTTQL ATHDLTDHHN SSPLFRAPLS 601 650 ENSP00000248594/1-780 FTNPLHSDDS DSDERNSDGA VTQNKTNIST ASATVSAATS TESISTRKVL ENSBTAP00000004985/1-755 FTNPLHSDDS DSDERNSDGS VTKNKTSIST ASATVSAATS --SISTRKVL ENSTTRP00000000733/1-751 FTNPLHSDDS DSDERNSDGA VTKNKTSIST ASATVSAAAS TESISTRKVL bmy_04353T0/1-412 FTNPLHSDDS DSDERNSDGA VTKNKTSIST ARATVSAAA- ---------- BACU012287/1-784 FTNPLHSDDS DSDERNSDGA VTKNKTSIST ASATVSAAAS TESISTRKVL 651 700 ENSP00000248594/1-780 PMSIARHNIA GTTHSGAEKD VDVSEDSPPP LPERTPESFV LASEHNTPVR ENSBTAP00000004985/1-755 PMSIARHDIA GTIHSGAEKD VDVSEDSPPP LPERTPESFV LANEHNTSVR ENSTTRP00000000733/1-751 SMSIARHDIA GTIHSGAEKD VDVSEDSPPP LPERTPESFV LASEHNTPVR bmy_04353T0/1-412 ---------- ---------N VDVSEDSPPP LPERTPESFV LASEHNTPVR BACU012287/1-784 SMSIARHDIA GTIHSGAEKD IDVSEDSPPP LPERTPESFV LASEHNTPVR 701 750 ENSP00000248594/1-780 SEWSELQSQE RSEQKKSEGL ITSENEKCDH PAGGIHYEMC IECPPTFSDK ENSBTAP00000004985/1-755 AEWSELQNQE QSEQKNPEGL ITSGSETCDH PAQGIHTETC TECPPTVSNK ENSTTRP00000000733/1-751 SEWSELQNQE QCEQRKPEGL ITSGSETCDH PARGIHTETC TECPTNFSNK bmy_04353T0/1-412 SEWSELQNQE QCEQRKPEGL ITSGSETCDH PARGIHTETC TECPPTFSNK BACU012287/1-784 SEWSELQNQE QCEQRKPEGL ITSGSETFDH PARGVHTETC TECPPTFSNK 751 800 ENSP00000248594/1-780 REQISENPTE ATDIGFGNRC GKPKGPRDPP SEWT ENSBTAP00000004985/1-755 KDQLSEGPTE ATEIGFGNRC GKPKGPRDPP SEWT ENSTTRP00000000733/1-751 KDQISESPTE ATEMGFGNRC GKPKGPRDPP SEWT bmy_04353T0/1-412 KDQISESPTE ATEIGFGNRC GKPKGPRDPP SEWT BACU012287/1-784 KDQISESPTE ATEIGFGNRC GKPKGPRDPP SEWT