KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:22 2014 Check: 00 .. Name: BACU000585/1-1518 Len: 1563 Check: 7368 Weight: 1.00 Name: ENSTTRP00000010903/1-526 Len: 1563 Check: 2090 Weight: 1.00 Name: ENSP00000262626/1-417 Len: 1563 Check: 5726 Weight: 1.00 Name: bmy_12267T0/1-280 Len: 1563 Check: 5381 Weight: 1.00 Name: ENSBTAP00000004986/1-417 Len: 1563 Check: 8672 Weight: 1.00 // 1 50 BACU000585/1-1518 ---------- ---------- -MGALARPEP AVPAVSSAWG GCVEVDSETE ENSTTRP00000010903/1-526 VEASLLLQTQ SPSLLLTQAQ AWGPPGLQIQ ASPCRWSHTD PILEPSPVCV ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 51 100 BACU000585/1-1518 AVYGMTFKIL CISCKRRSET TAETFTEWTF RQKGTEEFVK ILRYENEVLQ ENSTTRP00000010903/1-526 RDHGVLWPGP SPSLPGWAPG TGGTGLASAP PGPASPFISP QVPPRPRRSA ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 101 150 BACU000585/1-1518 LEEDERFEGR VVWNGSRGTK DLQDLSIFIT NVTYNHSGDY ECHVYRLLFF ENSTTRP00000010903/1-526 GESLTRGRDM AEKEGGR--- ---------- ---------- ---------- ENSP00000262626/1-417 ---------M AQKEGGR--- ---------- ---------- ---------- bmy_12267T0/1-280 ---------M VSIAGGR--- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------M AEKEGGR--- ---------- ---------- ---------- 151 200 BACU000585/1-1518 DNYEHNTSVV KKIHLEVVNK ANRDMASIVS EIMMYLLIVV LTIWLVAEMV ENSTTRP00000010903/1-526 ---------- -----TVPCC SGPKVAALTV GTVLLLTGIG AASWAIVTVL ENSP00000262626/1-417 ---------- -----TVPCC SRPKVAALTA GTLLLLTAIG AASWAIVAVL bmy_12267T0/1-280 ---------- -----TVPCC SGPKVAALTV GTVLLLTGIG AASWAIVTVL ENSBTAP00000004986/1-417 ---------- -----TVPCC SGPKVAALTV GTVLLLTGIG AASWAIVTVL 201 250 BACU000585/1-1518 YCYKKIAAAT EAAAQENAWP DRAMLLRTQG GS-----SHC GDRAAADRHR ENSTTRP00000010903/1-526 LRSDQEPLYP VQAGPADA-- -RLTVFDQTE GTXXXXXXXX XXXXXXXXXX ENSP00000262626/1-417 LRSDQEPLYP VQVSSADA-- -RLMVFDKTE GTWRLLCSSR SNARVAGLSC bmy_12267T0/1-280 LRSDQEPL-- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 LRSDQEPLYP VQVGPADA-- -RLTVFDQTE GTWRLLCSSR SNARVAGLSC 251 300 BACU000585/1-1518 GSVLGHWALA HSELDVRTAG ANGTSGFFCV DEGRLPYARR LLEVLSVCDC ENSTTRP00000010903/1-526 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXDC ENSP00000262626/1-417 EEMGFLRALT HSELDVRTAG ANGTSGFFCV DEGRLPHTQR LLEVISVCDC bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 EEMGFLRALD FSELDVRTAG ANGTSGFFCV DEGRLPHARR LLEVLSVCDC 301 350 BACU000585/1-1518 PRGRFLATIC QDCGHRKLPV DRIVGGQDTS LGRWPWQVSL RYDGAHLCGG ENSTTRP00000010903/1-526 PRGRFLATIC QDCGHRKLPV DRIVGGQDTS LGRWPWQVSL RYDGAHLCGG ENSP00000262626/1-417 PRGRFLAAIC QDCGRRKLPV DRIVGGRDTS LGRWPWQVSL RYDGAHLCGG bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 PRGRFLATSC QDCGHRKLPV DRIVGGQDTS LGRWPWQVSL RYDGAHLCGG 351 400 BACU000585/1-1518 SLLSRDWVLT AAHCFPERNR VLSRWRVFAG AVAQTSPHGV QLGVQAVIYH ENSTTRP00000010903/1-526 SLLSRDWVLT AAHCFPERNR VLSRWRVFAG AVAQTSPHGV QLGVQAVIYH ENSP00000262626/1-417 SLLSGDWVLT AAHCFPERNR VLSRWRVFAG AVAQASPHGL QLGVQAVVYH bmy_12267T0/1-280 ---------- -------RNR VLSRWRVFAG AVAQTSPHGV QLGVQAVIYH ENSBTAP00000004986/1-417 SVLSRDWVLT AAHCFPERNR VLSRWRVFAG AVAQTSPHGV QLGVQAVIYH 401 450 BACU000585/1-1518 GGYLPFRDPN SEENSNDIAL VHLSSSLP-- ---------- -------LTE ENSTTRP00000010903/1-526 GGYLPXXXXX XXXXXXXXXX XXXXXXXX-- ---------- -------XXX ENSP00000262626/1-417 GGYLPFRDPN SEENSNDIAL VHLSSPLP-- ---------- -------LTE bmy_12267T0/1-280 GGYLPFRDPN SEENSNDIAL VHLSSSLPLT GLYQAGQAGR GGTSVVCLTE ENSBTAP00000004986/1-417 GGYLPFRDPN SEENSNDIAL VHLSGTLP-- ---------- -------LTE 451 500 BACU000585/1-1518 YIQPVCLPAA GQALVDGKIC TVTGWGNTQY YGQQAGVLQE ARVPIISSDV ENSTTRP00000010903/1-526 YIQPVCLPAA GQALVDGKIC TVTGWGNTQY YGQQAGVLQE ARVPIISSDV ENSP00000262626/1-417 YIQPVCLPAA GQALVDGKIC TVTGWGNTQY YGQQAGVLQE ARVPIISNDV bmy_12267T0/1-280 YIQPVCLPAA GQALVDGKIC TVTGWGNTQY YGQQAGVLQE ARVPIISSDV ENSBTAP00000004986/1-417 YIQPVCLPAA GQALVDGKIC TVTGWGNTQY YGQQAGVLQE ARVPIISNDV 501 550 BACU000585/1-1518 CNGPDFYGNQ IKPKMFCAGY PEGGIDACQG DSGGPFVCED SISRTPRWRL ENSTTRP00000010903/1-526 CNGPDFYGNQ IKPKMFCAGY PEGGIDACQG DSGGPFVCED SISRTPRWRL ENSP00000262626/1-417 CNGADFYGNQ IKPKMFCAGY PEGGIDACQG DSGGPFVCED SISRTPRWRL bmy_12267T0/1-280 CNGPDFYGNQ IKPKMFCAGY PEGGIDACQG DSGGPFVCED SISRTPRWRL ENSBTAP00000004986/1-417 CNGPDFYGNQ IKPKMFCAGY PEGGIDACQG DSGGPFVCED SISRTPRWRL 551 600 BACU000585/1-1518 CGIVSWGTGC ALAQKPGVYT KVSDFREWIF QAIKVCTNGL VSFGEPVALF ENSTTRP00000010903/1-526 CGIVSWGTGC ALAQKPGVYT KVSDFREWIF QAIKTHS--- ---------- ENSP00000262626/1-417 CGIVSWGTGC ALAQKPGVYT KVSDFREWIF QAIKTHS--- ---------- bmy_12267T0/1-280 CGIVSWGTGC ALAQKPGVYT KVSDFREWIF QAIKTHS--- ---------- ENSBTAP00000004986/1-417 CGIVSWGTGC ALAQKPGVYT KVSDFREWIF QAIKTHS--- ---------- 601 650 BACU000585/1-1518 TPEAFPLEMG QVFAAPFWAG GSTSSRGHVW YRQSRRPELL RRAAQDLAYA ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 651 700 BACU000585/1-1518 SLVALPLRTP CSWPPGTKFS FGGHLAPRLG SATRLAVDTG LELWIQRGHL ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 701 750 BACU000585/1-1518 ELVEPEAEVT VTKGPCGPEA LTPLGMPQLE PGSFQASWQE AGSCSSEWPS ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 751 800 BACU000585/1-1518 CPAHLRARYA GPKACGQLSE LTGPFAACAW TLPVGPFVDS CVEELRSDNG ENSTTRP00000010903/1-526 ---------- --EASGMVTQ L--------- ---------- ---------- ENSP00000262626/1-417 ---------- --EASGMVTQ L--------- ---------- ---------- bmy_12267T0/1-280 ---------- --EASGMVTQ L--------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- --EASGMVTQ L--------- ---------- ---------- 801 850 BACU000585/1-1518 SLAVSCQALA AVTRACQTID IPVGTWRGPD FCEQFCPENS HWETCADICG ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 851 900 BACU000585/1-1518 ASCPHEEVPL TCHSPCREGC VGNAGCVFTG GACVHPAPCG CSWPGAPAFT ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 901 950 BACU000585/1-1518 AWVENDHLSP TASVTGARRI EVRAHRVKVM TEAQTPGRVQ VNGTQAHLPL ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 951 1000 BACU000585/1-1518 PLAGGPVHVY FSGSGAVLQT ETGLLVAYDW FNHLCVIVPE TYAGALWVGT ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 1001 1050 BACU000585/1-1518 SMGTPGMASV APMTPCCPTQ RSFCAQLEGP GLHSWLLHAP LCPYDREGQY ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 1051 1100 BACU000585/1-1518 IPCTSQDETN PDAYIFSGIC DLCLAGGSDR ILCLALQKYT AVCQGANVTT ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 1101 1150 BACU000585/1-1518 GPWRNSSFCA ATGPKHSRYQ LCLDPCRARH LGVPVRLHPP SGGLACAEGC ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 1151 1200 BACU000585/1-1518 ACHDMSTCGP RARCVRPEQC GRSYQHFQGT CTYHLAHSCE PDPIPGGFSF ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 1201 1250 BACU000585/1-1518 SIAASNRNFC SLHVSFLYCK EEELSSWRLK TRVILEWGQQ VQVTGQKGGW ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 1251 1300 BACU000585/1-1518 RGGGPPGAAG PRGPPVVGTQ LQLRFNGCNS LFLQVGPEYQ GRLCSLWGDF ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 1301 1350 BACU000585/1-1518 SGDPGDDKVL PSRVPGSSDA DFGNTWQSWD SWPGPASLTS ASTALATACW ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 1351 1400 BACU000585/1-1518 VLPEAYAELC TLRGVRLPEW RASLGRSMVC PANSYYDFCG PPCPATCASL ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 1401 1450 BACU000585/1-1518 NAPAPCACQC TAGCFCCQGF ALKAGICVRH TPCGWSFWAL GCYPRPPATR ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 1451 1500 BACU000585/1-1518 GAWATGLDTH SSATLRPAGP TNCATSAGVF GAPPHALQDI LALRRPSPAH ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 1501 1550 BACU000585/1-1518 IQWDSPPVFR AWLGDTDQNM LPHHTPPSPS EWSAGLPRGP SRWMGTWQDG ENSTTRP00000010903/1-526 ---------- ---------- ---------- ---------- ---------- ENSP00000262626/1-417 ---------- ---------- ---------- ---------- ---------- bmy_12267T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004986/1-417 ---------- ---------- ---------- ---------- ---------- 1551 1600 BACU000585/1-1518 GCHCWWDHLG GSR ENSTTRP00000010903/1-526 ---------- --- ENSP00000262626/1-417 ---------- --- bmy_12267T0/1-280 ---------- --- ENSBTAP00000004986/1-417 ---------- ---