KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:24 2014 Check: 00 .. Name: ENSP00000257527/1-918 Len: 1012 Check: 9163 Weight: 1.00 Name: ENSTTRP00000012449/1-909 Len: 1012 Check: 1865 Weight: 1.00 Name: ENSBTAP00000005003/1-906 Len: 1012 Check: 4554 Weight: 1.00 Name: bmy_14762T0/1-798 Len: 1012 Check: 3443 Weight: 1.00 Name: BACU000780/1-965 Len: 1012 Check: 8155 Weight: 1.00 // 1 50 ENSP00000257527/1-918 MPGGAGAARL CLLAFALQPL RPRAAREPGW TR-GSEEGSP KLQHELIIPQ ENSTTRP00000012449/1-909 MPRGVGAAQL CLLALAL--- -------PGW TRRGSGEGSP QPQHELIIPQ ENSBTAP00000005003/1-906 MPRGVGIAQL CLLVLAL--- -------PGW TRRGSGEGSP QLQHELIIPQ bmy_14762T0/1-798 MP-------- ---VFIL--- ---------- ---------- ---------- BACU000780/1-965 MPRGVGAAQL CLLALAL--- -------PGW TR-------- ---------M 51 100 ENSP00000257527/1-918 WKTSESPVRE KHPLKAELRV MAEGRELILD LEKNEQLFAP SYTETHYTSS ENSTTRP00000012449/1-909 WKTAESPLRE KHPLKAELRV MAEGRELILD LEKNEHLFAP AYTETQYTPS ENSBTAP00000005003/1-906 WKTAESPMRE KHPLKAELRV MAEGRELILD LEKNEHLFAP AYTETCYTPS bmy_14762T0/1-798 ---------- ---------- ---------- ---FRHLFAP AYTETHYTPS BACU000780/1-965 ISSGLDVIPG LLELAAGRRL DENGSSRAKQ YDLTRNLFAP AYTETHYTPS 101 150 ENSP00000257527/1-918 GNPQTTTRKL EDHCFYHGTV RETELSSVTL STCRGIRGLI TVSSNLSYVI ENSTTRP00000012449/1-909 GNPRTTTLKS EDHCFYHGTV RKAEQSSVTL STCRGMRGLI MVSSNLSYII ENSBTAP00000005003/1-906 GDAQTTTLKS EDHCFYHGTV RKAEQSSVML STCRGMRGLI IVSSNLSYII bmy_14762T0/1-798 GNPRTTTLKS KDHCFYHGTV RKAEQSSVML STCRGM---- ---------- BACU000780/1-965 GNPRTTTLKS KDHCFYHGTV RKAEQSSVTL STCRGMRGLI MVSSNLSYII 151 200 ENSP00000257527/1-918 EPLPDSKGQH LIYRSEHLKP PPGNCGFEHS KPTTRDWALQ FTQQTKKRPR ENSTTRP00000012449/1-909 EPLPDSEGYH LIYRSEHLKL PPRNCGFEHS KPTARDWVPQ FTNQTKKRPR ENSBTAP00000005003/1-906 EPLPDSESHH RIYRSEHLKL PLGNCGFE-- -PTARDWVPQ FTNQTKKRPR bmy_14762T0/1-798 ---------- ---RSEHLKL PPGNCGFEHS KPTARDWVLQ FTNQTKKRPR BACU000780/1-965 EPLPDSEGHH LIYRSEHLKL PLGNCGFEHS KPTARDWVLQ FTNQTKKRPR 201 250 ENSP00000257527/1-918 RMKREDLNSM KYVELYLVAD YLEFQKNRRD QDATKHKLIE IANYVDKFYR ENSTTRP00000012449/1-909 RMKREDLHSM KYVELYLVAD YEEFQKNRRD QDATKHKLME IANYVDKXXX ENSBTAP00000005003/1-906 RMKREDLHSM KYVELYLVAD YAEFQKNGLD QDATKHKLME IANYVDKFYR bmy_14762T0/1-798 RMKREDLHSM KYVELYLVAD YAEFQKNRRD QDATKHKLME IANYVDKFYR BACU000780/1-965 RMKREDLHSM KYVELYLVAD YAEFQKNRRD QDATKHKLME IANYVDKFYR 251 300 ENSP00000257527/1-918 SLNIRIALVG LEVWTHGNMC EVSENPYSTL WSFLSWRRKL LAQKYHDNAQ ENSTTRP00000012449/1-909 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000005003/1-906 SLNIRIALVG LEVWTHGNMC EVSENPYSTL WSFLSWRRKL LTRKNHDNAQ bmy_14762T0/1-798 SLNIRIALVG LEVWTHGNMC EVSENPYSTL WSFLSWRRKL LARKSHDNAQ BACU000780/1-965 SLNIRIALVG LEVWTHGNMC EVSENPYSTL WSFLSWRRKL LARKSHDNAQ 301 350 ENSP00000257527/1-918 LIT------- ---------- ---------- ---------- -------GMS ENSTTRP00000012449/1-909 XXX------- ---------- ---------- ---------- -------GMS ENSBTAP00000005003/1-906 LIT------- ---------- ---------- ---------- -------GMS bmy_14762T0/1-798 LIT------- ---------- ---------- ---------- -------GMS BACU000780/1-965 LITNGMQLCK PYPFPSREWG YGHIVGRSDL LLSLLFLWSS ERVGERKGMS 351 400 ENSP00000257527/1-918 FHGTTIGLAP LMAMCSVYQS GGVNMDHSEN AIGVAATMAH EMGHNFGMTH ENSTTRP00000012449/1-909 FHGTTIGLAP LMAMCSVYQS GGVNMDHSEN AIGVAATMAH EMGHNFGMSH ENSBTAP00000005003/1-906 FHGTTIGLAP LMAMCSVYQS GGVNMDHSEN AIGVAATMAH EMGHNFGMSH bmy_14762T0/1-798 FHGTTIGLAP LMAMCSVYQS GGVNMDHSEN AIGVAATMAH EMGHNFGMSH BACU000780/1-965 FHGTTIGLAP LMAMCSVYQS GGVNMDHSEN AIGVAATMAH EMGHNFGMSH 401 450 ENSP00000257527/1-918 DSADCCSASA ADGGCIMAAA TGHPFPKVFN GCNRRELDRY LQSGGGMCLS ENSTTRP00000012449/1-909 DSADCCSASA ADGGCIMAAA TGHPFPRVFN RCNRKELDRY LQSGGGMCLS ENSBTAP00000005003/1-906 DSADCCSASA ADGGCIMAAA TGHPFPRVFN RCNRRELDRY LQSGGGMCLS bmy_14762T0/1-798 DSADCCSASA ADGGCIMAAA TGHPFPRVFN RCNRKELDRY LQSGGGMCLS BACU000780/1-965 DSADCCSASA ADGGCIMAAA TGHPFPRVFN RCNRKELDRY LQSGGGMCLS 451 500 ENSP00000257527/1-918 NMPDTRMLYG GRRCGNGYLE DGEECDCGEE E--------- ---------- ENSTTRP00000012449/1-909 NMPDTRTLYG GQRCGNGYLE DGEECDCGEE E--------- ---------- ENSBTAP00000005003/1-906 NMPDTRTLYG GRRCGNGYLE DGEECDCGEE E--------- ---------- bmy_14762T0/1-798 NMPDTRTLYG GQRCGNGYLE DGEECDCGEE ESPVSLPCCP RGSRPLPLPP BACU000780/1-965 NMPDTRTLYG GQRCGNGYLE DGEECDCGEE E--------- ---------- 501 550 ENSP00000257527/1-918 -ECNNPCCNA SNCTLRPGAE CAHGSCCHQC KLLAPGTLCR EQARQCDLPE ENSTTRP00000012449/1-909 -ECDNPCCNA SNCTLREGAE CAHGSCCHRC KLLAPGTLCR EQARQCDLPE ENSBTAP00000005003/1-906 -ECENPCCNA ANCTLREGAE CAHGSCCHRC KLLAPGMLCR EQARQCDLPE bmy_14762T0/1-798 QECDNPCCNA SNCTLREGAE CAHGSCCHRC KLLAPGTLCR EQARQCDLPE BACU000780/1-965 -ECDNPCCNA SNCTLREGAE CAHGSCCHRC KLLAPGTLCR EQARQCDLPE 551 600 ENSP00000257527/1-918 FCTGKSPHCP TNFYQMDGTP CEGGQAYCYN GMCLTYQEQC QQLWGPGARP ENSTTRP00000012449/1-909 FCTGKSPHCP TNFYQMDGTP CEGGQAYCYN GMCLTYQEQC QQLWGPGARP ENSBTAP00000005003/1-906 FCTGKSPQCP TNFYQMDGTP CEDGQAYCYN GMCLTYQEQC QQLWGPGARP bmy_14762T0/1-798 FCTGKSPHCP TNFYQMDGTP CEGGQAYCYN GMCLTYQEQC QQLWGPGARP BACU000780/1-965 FCTGKSPHCP TNFYQMDGTP CEGGQAYCYN GMCLTYQEQC QQLWGPGARP 601 650 ENSP00000257527/1-918 APDLCFEKVN VAGDTFGNCG KDMNGEHRKC NMRDAKCGKI QCQSSEARPL ENSTTRP00000012449/1-909 APDLCFEKVN VAGDTFGNCG KDMNGKHKKC NMRDAKCGKI QCQSSEARPL ENSBTAP00000005003/1-906 APDLCFEKVN VAGDTFGNCG KDMNGKHKKC NMRDAKCGKI QCQSSEARPL bmy_14762T0/1-798 APDLCFEKVN VAGDTFGNCG KDMNGKHKKC NMRDAKCGKI QCQSSEARPL BACU000780/1-965 APDLCFEKVN VAGDTFGNCG KDMNGKHKKC NMRDAKCGKI QCQSSEARPL 651 700 ENSP00000257527/1-918 ESNAVPIDTT IIMNGRQIQC RGTHVYRGPE EEGDMLDPGL VMTGTKCGYN ENSTTRP00000012449/1-909 ESNAVPIDTT IIMNGRQIRC RGTHVYRGPE EEGDMLDPGL VMTGTKCGHN ENSBTAP00000005003/1-906 ESNAVPIDTV IVINGRQIRC RGTHVYRGPE EEGDMLDPGL VMTGTKCGHN bmy_14762T0/1-798 ESNAVPIDTT IIMNGRQIRC RGTHVYRGPE EEGDMLDPGL ---------- BACU000780/1-965 ESNAVPIDTT IIMNGRQIRC RGTHVYRGPE EEGDMLDPGL VMTGTKCGHN 701 750 ENSP00000257527/1-918 HICFEGQCRN TSFFETEGCG KKCNGHGVCN NNQNCHCLPG WAPPFCNTPG ENSTTRP00000012449/1-909 HICFEGQCRN TSFFETEGCG KKCHGHGVCN NNQNCHCFRG WAPPFCNTPG ENSBTAP00000005003/1-906 HICFEGQCRN TSFFEMEGCA KKCNGHGVCN NNQNCHCFRG WAPPFCNTPG bmy_14762T0/1-798 ---------- ---------- -------VCN NNQNCHCFRG WAPPFCNTPG BACU000780/1-965 HICFEGQCRN TSFFETEGCG KKCHGHGVCN NNQNCHCFGG WAPPFCNTPG 751 800 ENSP00000257527/1-918 HGGSIDSGPM PPESVGPVVA GVLVAILVLA VLMLMYYCCR QNNKLGQLKP ENSTTRP00000012449/1-909 QGGSIDSGPM PPESAGPVVA GVFSAIFALA VLMLMYRCCK QNNKLGYLKP ENSBTAP00000005003/1-906 QGGSIDSGPM PPESAGPVVA GVFSAIFVLV ALIMMYRCCK QNNKLGYLKS bmy_14762T0/1-798 QGGSIDSGPM PPESAGPVVA GVFSAIFALA VLMLMYRCCK QNNKLGYLKP BACU000780/1-965 QGGSIDSGPM PPESAGPIVA GVFSAIFVLA VLMLMYHCCK QNNKLGYLKP 801 850 ENSP00000257527/1-918 SALPSKLRQQ FSCPFRVSQN SGTGHANPTF KLQTPQGKRK VINTPEILRK ENSTTRP00000012449/1-909 LALPSKLRQQ FSCPFRVSQN SGTGHANPTF KLQTPQGKRK VTNTPETLRK ENSBTAP00000005003/1-906 LALPSKLRQQ FSCPFRVSQN SGTGHANPTF KLQTPQGRRK VTNTPETLRK bmy_14762T0/1-798 LALPSKLRQQ FSCPFRVSQN SGTGHANPTF KLQTPQGKRK VTNTPETLRK BACU000780/1-965 LALPSNLRQQ FSCPFRVSQN SGTGHANPTF KLQTPQGKRK VTNTPETLRK 851 900 ENSP00000257527/1-918 PSQPPPRPPP DYLRGGSPPA PLPAHLSRAA RNSPGPGSQI ERTESSRRPP ENSTTRP00000012449/1-909 PSQPPPRPPA DYLHGGSPPA PLPAHLSRTA RNSPGAGPPV ERKESSRRPP ENSBTAP00000005003/1-906 PSQPPPRPPP DYLHSVSPPA PSPAHLSKAA RNSPGPRPSV ERKESSRGPP bmy_14762T0/1-798 PSQPPPRPPA DYLHGGSPPA PLPAHLSRTA RNSPGAGPPV ERKESSRRPP BACU000780/1-965 PSQPPPRPPA DYLHGGSPPA PLPAHLSRTA RNSPGAGPPV ERKESSRRPP 901 950 ENSP00000257527/1-918 PSRPIPPAPN CIVSQDFSRP RPPQKALPAN PVPGRRSLPR PGGASPLRPP ENSTTRP00000012449/1-909 PSRPVPPAPK CILSQDFSRP RPPQKALPAN PVPGRKSLPR PGGVSILWPP ENSBTAP00000005003/1-906 PSRPVPPAPK CVLSQDLSRP RPPQKALPAN PVPGRKNLPR PSGASILRPP bmy_14762T0/1-798 PSRPVPPAPK CILSQDFSRP RPPQKALPAN PVPGRKSLPR PGAVSILWPP BACU000780/1-965 PSRPVPPAPK CILSQDFSRP RPPQKALPAN PVPGRKSLPR PGGVSILWPP 951 1000 ENSP00000257527/1-918 GAGPQQSRP- -LAALAPKF- PEYRSQRA-- -----GGMI- -----SSKI- ENSTTRP00000012449/1-909 ASRPQQTRP- -LAVLTPKF- PEYRSQRA-- -----VGMA- -----SSKI- ENSBTAP00000005003/1-906 PSGPPQTRP- -LVAPAPKF- PEYRSQRA-- -----VGMT- -----SSKI- bmy_14762T0/1-798 ASRPQQTRP- -LAAPAPKF- PEYRSQRA-- -----VGMA- -----SSKI- BACU000780/1-965 ASPSCGPLPL DLAAPAPKPG GKNRVEKTDQ FMLLDVGLNI QSKSKGQKLS 1001 1050 ENSP00000257527/1-918 ---------- -- ENSTTRP00000012449/1-909 ---------- -- ENSBTAP00000005003/1-906 ---------- -- bmy_14762T0/1-798 ---------- -- BACU000780/1-965 ISWCLHDCPL NW