KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:26 2014 Check: 00 .. Name: ENSBTAP00000005013/1-940 Len: 1053 Check: 3578 Weight: 1.00 Name: ENSTTRP00000008537/1-944 Len: 1053 Check: 9287 Weight: 1.00 Name: ENSP00000349823/1-954 Len: 1053 Check: 6391 Weight: 1.00 Name: bmy_03191T0/1-1016 Len: 1053 Check: 1030 Weight: 1.00 Name: BACU012686/1-597 Len: 1053 Check: 9761 Weight: 1.00 // 1 50 ENSBTAP00000005013/1-940 MSISPLKCPC LLQRSRGKIE ANRQKALARR AEKLLAEQHQ ---------- ENSTTRP00000008537/1-944 MSLP------ LTEEQRKKIE ENRQKALARR AEKLLAGQHQ NTVSGSSIAA ENSP00000349823/1-954 MSLP------ LTEEQRKKIE ENRQKALARR AEKLLAEQHQ RTSSGTSIAG bmy_03191T0/1-1016 MSLP------ LTEEQRKKIE ENRQKALARR AEKLLAEQHQ NTVSGSNIAA BACU012686/1-597 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000005013/1-940 KPAQSKQGPS QNLPRDPSKS GSHGIFFKQQ NPSSSSHGDQ RPQNPHSFSP ENSTTRP00000008537/1-944 KPSRSKQGPS THLHQDPSKS GSHGVVFKQQ NPRSSSDGDQ RPQNSHSF-- ENSP00000349823/1-954 NPFQAKQGPS QNFPRESCKP VSHGVIFKQQ NLSSSSNADQ RPHDSHSF-- bmy_03191T0/1-1016 KPSQSKQGPS RHLHQDPSKS GSHGVVFNQQ NPRSSSDGDQ RPQNSHSFQL BACU012686/1-597 ---------- ---------- --MQVLYLIP SP-------- ---------- 101 150 ENSBTAP00000005013/1-940 NTSEQAKGMW QRPEEMPTAC PSYRPPNQVT VAGISPPLAN SPPGVPSQQL ENSTTRP00000008537/1-944 ----QAKGTW QRQEEMPTAC PSHRPPNQVT LAGISPPLAN SPPVVSSEQL ENSP00000349823/1-954 ----QAKGIW KKPEEMPTAC PGHSPRSQMA LTGISPPLAQ SPPEVPKQQL bmy_03191T0/1-1016 STSEQAKGTW QRQEEMPTAC PSHRPPNQVT LAGISPPLAN SPPTVSSEQL BACU012686/1-597 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000005013/1-940 WGCELGQGHP QASLETQSTP FANTTHEPLA KVKNFQETAA SSCGQPPRDP ENSTTRP00000008537/1-944 WVYGLEQGQI QASHKTKSTP FVNTTHEPLA RAKNFQETTA SSSGQPPRDP ENSP00000349823/1-954 LSYELGQGHA QASPEIRFTP FANPTHKPLA KPKSSQETPA HSSGQPPRDA bmy_03191T0/1-1016 WGYGLEQGQI QASHETKSTP FVNTTHEPLA RAKNFQETAA SSSGQPPRDP BACU012686/1-597 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000005013/1-940 ELEARMARPS TSGQNI---- --SGSVMPRT EGRLQQKAGT PLHRVVGSQQ ENSTTRP00000008537/1-944 ELEARMARPS TSGQNV---- --SGSVMPRP EERLQQKSGT PLHKAAGSQQ ENSP00000349823/1-954 KLEAKTAKAS PSGQNISYIH SSSESVTPRT EGRLQQKSGS SVQKGVNSQK bmy_03191T0/1-1016 EFEARMARPS TSGQNV---- --SGSVMPRT EERLQQKSGT PLHKAAGSQQ BACU012686/1-597 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000005013/1-940 GRCIRNGERF QVKIGYNEAL IAVFKSLPSR SYDPATKTWN FSMTDYGPLM ENSTTRP00000008537/1-944 GTCIKIGDRF QVKIGYSEEL IAVFKSLPSR RYDPATKTWN FSMTDYGALM ENSP00000349823/1-954 GKCVRNGDRF QVLIGYNAEL IAVFKTLPSK NYDPDTKTWN FSMNDYSALM bmy_03191T0/1-1016 GTCIKIGDRF QVKIGYNEEL IAVFKGLPSR RY-------- ---------V BACU012686/1-597 ---------- ----GFLED- ---------- ---------- ---------- 301 350 ENSBTAP00000005013/1-940 KAAQRLPGIT LQPLEGAEGH MESPSTSSG- -IIAKTGLPA APSLAFVKGQ ENSTTRP00000008537/1-944 KAAQHLQAVT LQPLEGAEGH VESPSTSSSS RVAAQTCLPV APSLAFVKGQ ENSP00000349823/1-954 KAAQSLPTVN LQPLEWAYGS SESPSTSSEG ----QAGLPS APSLSFVKGR bmy_03191T0/1-1016 KAAQHLQAVT LQPLEGAEGH VESPSTSSGG -IATQTCLPV APSLAFVKGQ BACU012686/1-597 ---------- ---------- ---------- --------PV SP-------- 351 400 ENSBTAP00000005013/1-940 CVLISRARFE ADISYSEDLI ALFKQ----- ---------- ---MDSRKYD ENSTTRP00000008537/1-944 CILISRARFE ADISYSEGLI ALFKQ----- ---------- ---MDSRKYD ENSP00000349823/1-954 CMLISRAYFE ADISYSQDLI ALFKQ----- ---------- ---MDSRRYD bmy_03191T0/1-1016 CVLISRARFE ADISYSEDLI ALCQDQEVEL SPGRVHISLL CGPVAFCRRA BACU012686/1-597 ---------- ---------- ---------- ---------- ---LVGC--- 401 450 ENSBTAP00000005013/1-940 VKTRKWSFLL E--------- ---------- --------EY SKLMERVRGL ENSTTRP00000008537/1-944 VKTRKWNFLL E--------- ---------- --------EY SKLMERVRCL ENSP00000349823/1-954 VKTRKWSFLL E--------- ---------- --------EH SKLIAKVRCL bmy_03191T0/1-1016 VVQKHFSVTH EARLHIPVVF QHREGIAYLQ LPIDGCGRRL LEYLERVRCL BACU012686/1-597 -----YDYL- ---------- ---------- --------RV LRKVERVRCL 451 500 ENSBTAP00000005013/1-940 PQVQLDPLPK TLTL-FRAQL QKTSLSPVAD IPEADLSRVD SKLVSSLLPF ENSTTRP00000008537/1-944 PQVQLDPLPK TLTLAFAAQL QKTSLCPVAD IPEADLSKVD SKLVSSLLPF ENSP00000349823/1-954 PQVQLDPLPT TLTLAFASQL KKTSLSLTPD VPEADLSEVD PKLVSNLMPF bmy_03191T0/1-1016 PQVQLDPLPK TLTLAFAAQL QKTSLCPVAD IPEADLSRVD SKLVSSLLPF BACU012686/1-597 PQVQLDPLPK TLTLAFATQL QKTSLCPVAD IPEADLSRVD SKLVSSLLPF 501 550 ENSBTAP00000005013/1-940 QRAGVNFAIA QRGRLLLADD MGLGKTIQAI CIAAYYRKEW PLLVVVPSSV ENSTTRP00000008537/1-944 QRAGVNFAIA KRGRLLLADD MGLGKTIQAI CIAAYYRKEW PLLVVVPSSV ENSP00000349823/1-954 QRAGVNFAIA KGGRLLLADD MGLGKTIQAI CIAAFYRKEW PLLVVVPSSV bmy_03191T0/1-1016 QRVGVNFAIA KRGRLLLADD MGLGKTIQAI CIAAYYRKEW PLLVVVPSSV BACU012686/1-597 QRVGVNFAIA KRGRLLLADD MGLGKTIQAI CIAAYYRKEW PLLVVVPSSV 551 600 ENSBTAP00000005013/1-940 RFTWEQAFCR WLPSLNPLDI NVVVTGKDRL TDGLVNIVSF DLLSKLEKQL ENSTTRP00000008537/1-944 RFTWEQAFRQ WLPSLSPDHI NVVVTGKDRL TAGLVNIVSF DLLSKLEKQL ENSP00000349823/1-954 RFTWEQAFLR WLPSLSPDCI NVVVTGKDRL TAGLINIVSF DLLSKLEKQL bmy_03191T0/1-1016 RFTWEQAFRQ WLPSLSPDHI NVVVTGKDRL TAGLVNIVSF DLLSKLEKQL BACU012686/1-597 RFTWEQAFRQ WLPSLSPDHI NVVVTGKDRL TAGLVNIVSF DLLSKLEKQL 601 650 ENSBTAP00000005013/1-940 KPPFKVVIID ESHFLKNIKT ARCRAAMPLL KVAKRVILLS GTPAMSRPAE ENSTTRP00000008537/1-944 KPPFRVVIID ESHFLKNIKT ARCRAAVPLL K-AKRVILLS GTPAMSRPAE ENSP00000349823/1-954 KTPFKVVIID ESHFLKNSRT ARCRAAMPVL KVAKRVILLS GTPAMSRPAE bmy_03191T0/1-1016 KPPFRVVIID ESHFLKNIKT ARCRTAXPLL KVAKRVILLS GTPAMSRPAE BACU012686/1-597 KPPFRVVIID ESHFLKNIKT ARCRTAVPLL KVAKRVILLS GTPAMSRPAE 651 700 ENSBTAP00000005013/1-940 LYTQILAVRP TFFPQFHAFG LRYCGAKRQP WGWDYSGSSN LGELKLLLEE ENSTTRP00000008537/1-944 LYTQILAVRP TFFPQFHAFG LRYCGAKRLP WGWDYSGSSN LGELKLLLEE ENSP00000349823/1-954 LYTQIIAVKP TFFPQFHAFG LRYCDAKRMP WGWDYSGSSN LGELKLLLEE bmy_03191T0/1-1016 LYTQILAVRP TFFPQFHTFG LRYCGAKRLP WGWDYSGSSN LGELKLLLEE BACU012686/1-597 LYTQILAVRP TFFPQFHTFG LRYCGAKRLP WGWDYSGSSN LGELKLLLEE 701 750 ENSBTAP00000005013/1-940 AVMLRRLKGD VLSQLPAKQA RWWWSPQARS TPGPEPPWMP PPR-MTTKDK ENSTTRP00000008537/1-944 TVMLRRLKGD VLCQLPAKQR KMVVVAPGRI SARTRAALDA AAKEMTTKES ENSP00000349823/1-954 AVMLRRLKSD VLSQLPAKQR KIVVIAPGRI NARTRAALDA AAKEMTTKDK bmy_03191T0/1-1016 TVMLRRLKGD VLSQLPAKQR KMVVVAPGQI SARTRAALDA AAKEMTTKDN BACU012686/1-597 TVMLRRLKGD VLSQLPAKQR KMVVVAPGQI SARTRAALDA AAKEMTTKDS 751 800 ENSBTAP00000005013/1-940 TKQQQKEALI LFFNRTAEAK IPSIIEYILD LLESGREKFL VFAHHKVVLD ENSTTRP00000008537/1-944 TKQQQKEALI LFFNRTAEAK IPSVIEYILD LLESGREKFL VFAHHKVVLD ENSP00000349823/1-954 TKQQQKDALI LFFNRTAEAK IPSVIEYILD LLESGREKFL VFAHHKVVLD bmy_03191T0/1-1016 TKQQQKEALI LFFNRTAEAK IPSVIEYILD LLESGREKFL VFAHHKVVLD BACU012686/1-597 TKQQQKEALI LFFNRTAEAK IPSVIEYILD LLESGREKFL VFAHHKVVLD 801 850 ENSBTAP00000005013/1-940 AITKELERKR VQHIRIDGST SSADRETSAS SFS-CPRALR GVLSITAANM ENSTTRP00000008537/1-944 AVTNELERKX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000349823/1-954 AITQELERKH VQHIRIDGST SSAEREDLCQ QFQLSERHAV AVLSITAANM bmy_03191T0/1-1016 AVTNELERKR VKHIRIDGST SSADREDLCQ QFQLSEGPAV AVLSITAANM BACU012686/1-597 AVTNELERKR VKHIRIDGST SSADREDLCQ QFQLLEGPAV AVLSITAANM 851 900 ENSBTAP00000005013/1-940 GLTFSSADLV VFGELFWNPG VLMQAEDRVH RIGQLSSVSI HYLVARGTAD ENSTTRP00000008537/1-944 XXXXXXXXXX XXXELFWNPG XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000349823/1-954 GLTFSSADLV VFAELFWNPG VLIQAEDRVH RIGQTSSVGI HYLVAKGTAD bmy_03191T0/1-1016 GLTFSSADLV VFAELFWNPG VLMQAEDRVH RIGQSSSVGI HYLVARGTAD BACU012686/1-597 GLTFSSADLV VFAELFWNPG VLMQAEDRVH RIGQSSSVGI HYLVARGTAD 901 950 ENSBTAP00000005013/1-940 DYLWPLIQEK IKVLGEAGLS ETNFSEMTEA TDYFSKDSKQ QKIYNLFQKS ENSTTRP00000008537/1-944 XXXXPLIQEK IKVLGEAGLS ETNFSEMTEA ADYFYKDPKQ QRIYDFFQKS ENSP00000349823/1-954 DYLWPLIQEK IKVLAEAGLS ETNFSEMTES TDYLYKDPKQ QKIYDLFQKS bmy_03191T0/1-1016 DYLWPLIQEK IKVLGEAGLS ETNFSEMTEA ADYFYKDPKQ RKIYDLFQKS BACU012686/1-597 DYLWPLIQEK IKVLGEAGLS ETNFSEMTEA ADYFYKDPKQ QKIYDFFQKS 951 1000 ENSBTAP00000005013/1-940 FEEDGNDMEL LEAAESFDPG ---------S QDTGDKLDES TLTGSPVKKK ENSTTRP00000008537/1-944 FEEDGSDMEL LEAAESFDPG SG-------S QDTGDTLDES TLTGSPLKKS ENSP00000349823/1-954 FEKEGSDMEL LEAAESFDPG SASGTSGSSS QNMGDTLDES SLTASPQKKR bmy_03191T0/1-1016 FEQDGSDMEL LEAAESFDPG SG-------S QDTGDTLDES TLTGSPLKKS BACU012686/1-597 FEEDGSDMEL LEAAESFDPG SG-------S QDTGDTLDES TLTGSPLKKS 1001 1050 ENSBTAP00000005013/1-940 RFEFFDNWDS FTSPL----- ---------- ---------- ---------- ENSTTRP00000008537/1-944 RFEFFDNWDS FTSPL----- ---------- ---------- ---------- ENSP00000349823/1-954 RFEFFDNWDS FTSPL----- ---------- ---------- ---------- bmy_03191T0/1-1016 RFEFFDNWDS FTSPLLCSSG RYHSVGLCLQ AQRVTSPCVS ISFHYVWVCL BACU012686/1-597 RFEFFDNWDS FTSPL----- ---------- ---------- ---------- 1051 1100 ENSBTAP00000005013/1-940 --- ENSTTRP00000008537/1-944 --- ENSP00000349823/1-954 --- bmy_03191T0/1-1016 GLN BACU012686/1-597 ---