KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:29 2014 Check: 00 .. Name: ENSP00000420194/1-1088 Len: 1095 Check: 4615 Weight: 1.00 Name: ENSBTAP00000005042/1-1085 Len: 1095 Check: 5348 Weight: 1.00 Name: BACU006064/1-1081 Len: 1095 Check: 6534 Weight: 1.00 Name: ENSTTRP00000001326/1-1091 Len: 1095 Check: 949 Weight: 1.00 Name: bmy_16369T0/1-609 Len: 1095 Check: 8253 Weight: 1.00 // 1 50 ENSP00000420194/1-1088 MAFYSCCWVL LAL-TWHTSA YGPDQRAQKK GDIILGGLFP IHFGVAAKDQ ENSBTAP00000005042/1-1085 MALYSCCWIL LAFSTWCTSA YGPDQRAQKK GDIILGGLFP IHFGVAVKDQ BACU006064/1-1081 MAFYSCCWIF LAF-TWCTSA YGPDQRAQKK GDIILGGLFP IHFGVAAKDQ ENSTTRP00000001326/1-1091 MAFYSCCWIF LAF-TWCTSA YGPDQRAQKK GDIILGGLFP IHFGVAAKDQ bmy_16369T0/1-609 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000420194/1-1088 DLKSRPESVE CIRYNFRGFR WLQAMIFAIE EINSSPALLP NLTLGYRIFD ENSBTAP00000005042/1-1085 DLKSRPESVE CIRYNFRGFR WLQAMIFAIE EINSSPALLP NMTLGYRIFD BACU006064/1-1081 DLKSRPESVE CIRYNFRGFR WLQAMIFAIE EINSSPALLP NMTLGYRIFD ENSTTRP00000001326/1-1091 DLKSRPESVE CIRYNFRGFR WLQAMIFAIE EINSSPALLP NMTLGYRIFD bmy_16369T0/1-609 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000420194/1-1088 TCNTVSKALE ATLSFVAQNK IDSLNLDEFC NCSEHIPSTI AVVGATGSGV ENSBTAP00000005042/1-1085 TCNTVSKALE ATLSFVAQNK IDSLNLDEFC NCSEHIPSTI AVVGATGSGI BACU006064/1-1081 TCNTVSKALE ATLSFVAQNK IDSLNLDEFC NCSEHIPSTI AVVGATGSGI ENSTTRP00000001326/1-1091 TCNTVSKALE ATLSFVAQNK IDSLNLDEFC NCSEHIPSTI AVVGATGSGI bmy_16369T0/1-609 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000420194/1-1088 STAVANLLGL FYIPQVSYAS SSRLLSNKNQ FKSFLRTIPN DEHQATAMAD ENSBTAP00000005042/1-1085 STAVANLLGL FYIPQVSYAS SSRLLSNKNQ FKSFLRTIPN DEHQATAMAD BACU006064/1-1081 STAVANLLGL FYIPQVSYAS SSRLLSNKNQ FKSFLRTIPN DEHQATAMAD ENSTTRP00000001326/1-1091 STAVANLLGL FYIPQVSYAS SSRLLSNKNQ FKSFLRTIPN DEHQATAMAD bmy_16369T0/1-609 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000420194/1-1088 IIEYFRWNWV GTIAADDDYG RPGIEKFREE AEERDICIDF SELISQYSDE ENSBTAP00000005042/1-1085 IIEYFRWNWV GTIAADDDYG RPGIEKFREE AEERDICIDF SELISQYSDE BACU006064/1-1081 IIEYFRWNWV GTIAADDDYG RPGIEKFREE AEERDICIDF SELISQYSDE ENSTTRP00000001326/1-1091 IIEYFRWNWV GTIAADDDYG RPGIEKFREE AEERDICIDF SELISQYSDE bmy_16369T0/1-609 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000420194/1-1088 EEIQHVVEVI QNSTAKVIVV FSSGPDLEPL IKEIVRRNIT GKIWLASEAW ENSBTAP00000005042/1-1085 EKIQQVVEVI QNSTAKVIVV FSSGPDLEPL IKEIVRRNIT GRIWLASEAW BACU006064/1-1081 EEIQQVVEVI QNSTAKVIVV FSSGPDLEPL IKEIVRRNIT GRIWLASEAW ENSTTRP00000001326/1-1091 EEIQQVVEVI QNSTAKVIVV FSSGPDLEPL IKEIVRRNIT GRIWLASEAW bmy_16369T0/1-609 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000420194/1-1088 ASSSLIAMPQ YFHVVGGTIG FALKAGQIPG FREFLKKVHP RKSVHNGFAK ENSBTAP00000005042/1-1085 ASSSLIAMPE YFHVVGGTIG FGLKAGQIPG FREFLQKVHP RKSVHNGFAK BACU006064/1-1081 ASSSLIAMPE YFHVVGGTIG FALKAGKIPG FREFLQKVHP RKSVHNGFAK ENSTTRP00000001326/1-1091 ASSSLIAMPE YFHVVGGTIG FALKAGQIPG FREFLQKVHP RKSVHNGFAK bmy_16369T0/1-609 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000420194/1-1088 EFWEETFNCH LQEGAKGPLP VDTFLRGHEE SGDRFSNSST AFRPLCTGDE ENSBTAP00000005042/1-1085 EFWEETFNCH LQEGAKGPLP VDTFLRGHEE GGARLSNSPT AFRPLCTGEE BACU006064/1-1081 EFWEETFNCH LQEGAKGPLP VDTFLRGHEE GGGRISNSST AFRPLCTGDE ENSTTRP00000001326/1-1091 EFWEETFNCH LQEGAKGPLP MDTFLRGHEE GGGRISNSST AFRPLCTGDE bmy_16369T0/1-609 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000420194/1-1088 NISSVETPYI DYTHLRISYN VYLAVYSIAH ALQDIYTCLP GRGLFTNGSC ENSBTAP00000005042/1-1085 NISSVETPYM DYTHLRISYN VYLAVYSIAH ALQDIYTCIP GRGLFTNGSC BACU006064/1-1081 NISSVETPYM DYTHLRISYN VYLAVYSIAH ALQDIYTCIP GRGLFTNGSC ENSTTRP00000001326/1-1091 NISSVETPYM DYTHLRISYN VYLAVYSIAH ALQDIYTCIP GRGLFTNGSC bmy_16369T0/1-609 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000420194/1-1088 ADIKKVEAWQ VLKHLRHLNF TNNMGEQVTF DECGDLVGNY SIINWHLSPE ENSBTAP00000005042/1-1085 ADIKKVEAWQ VLKHLRHLNF TSNMGEQVTF DECGDLAGNY SIINWHLSPE BACU006064/1-1081 ADIKKVEAWQ VLKHLRHLNF TNNMGEQVTF DECGDLAGNY SIINWHLSPE ENSTTRP00000001326/1-1091 ADIKKVEAWQ VLKHLRHLNF TNNMGEQVTF DECGDLAGNY SIINWHLSPE bmy_16369T0/1-609 ---------- ---------- ---MGEQVTF DECGDLAGNY SIINWHLSPE 501 550 ENSP00000420194/1-1088 DGSIVFKEVG YYNVYAKKGE RLFINEEKIL WSGFSREPLT FVLSVLQVPF ENSBTAP00000005042/1-1085 DGSIVFKEVG YYNVYAKKGE RLFINDEKIL WSGFSRE--- -------VPF BACU006064/1-1081 DGSIVFKEVG YYNVYAKKGE RLFINEEKIL WSGFSRE--- -------VPF ENSTTRP00000001326/1-1091 DGSIVFKEVG YYNVYAKKGE RLFINEEKIL WSGFSREPLT IVISVLQVPF bmy_16369T0/1-609 DGSIVFKEVG YYNVYAKKGE RLFINEEKIL WSGFSRE--- -------VPF 551 600 ENSP00000420194/1-1088 SNCSRDCLAG TRKGIIEGEP TCCFECVECP DGEYSDETDA SACNKCPDDF ENSBTAP00000005042/1-1085 SNCSRDCLAG TRKGIIEGEP TCCFECVECP DGEYSDETDA SACDKCPDDF BACU006064/1-1081 SNCSRDCLAG TRKGIIEGEP TCCFECVECP DGEYSDETDA SACDKCPDDF ENSTTRP00000001326/1-1091 SNCSRDCLAG TRKGIIEGEP TCCFECVECP DGEYSDETDA SACDKCPDDF bmy_16369T0/1-609 SNCSRDCLAG TRKGIIEGEP TCCFECVECP DGEYSDETDA SACDKCPDDF 601 650 ENSP00000420194/1-1088 WSNENHTSCI AKEIEFLSWT EPFGIALTLF AVLGIFLTAF VLGVFIKFRN ENSBTAP00000005042/1-1085 WSNENHTSCI AKEIEFLSWT EPFGIALTLF AVLGIFLTAF VLGVFIKFRN BACU006064/1-1081 WSNENHTSCI AKEIEFLSWT EPFGIALTLF AVLGIFLTAF VLGVFIKFRN ENSTTRP00000001326/1-1091 WSNENHTSCI AKEIEFLSWT EPFGIALTLF AVLGIFLTAF VLGVFIKFRN bmy_16369T0/1-609 WSNENHTSCI AKEIEFLSWT EPFGIALTLF AVLGIFLTAF VLGVFIKFRN 651 700 ENSP00000420194/1-1088 TPIVKATNRE LSYLLLFSLL CCFSSSLFFI GEPQDWTCRL RQPAFGISFV ENSBTAP00000005042/1-1085 TPIVKATNRE LSYLLLFSLL CCFSSSLFFI GEPQDWTCRL RQPAFGISFV BACU006064/1-1081 TPIVKATNRE LSYLLLFSLL CCFSSSLFFI GEPQDWTCRL RQPAFGISFV ENSTTRP00000001326/1-1091 TPIVKATNRE LSYLLLFSLL CCFSSSLFFI GEPQDWTCRL RQPAFGISFV bmy_16369T0/1-609 TPIVKATNRE LSYLLLFSLL CCFSSSLFFI GEPQDWTCRL RQPAFGISFV 701 750 ENSP00000420194/1-1088 LCISCILVKT NRVLLVFEAK IPTSFHRKWW GLNLQFLLVF LCTFMQIVIC ENSBTAP00000005042/1-1085 LCISCILVKT NRVLLVFEAK IPTSFHRKWW GLNLQFLLVF LCTFMQIVIC BACU006064/1-1081 LCISCILVKT NRVLLVFEAK IPTSFHRKWW GLNLQFLLVF LCTFMQIVIC ENSTTRP00000001326/1-1091 LCISCILVKT NRVLLVFEAK IPTSFHRKWW GLNLQFLLVF LCTFMQIVIC bmy_16369T0/1-609 LCISCILVKT NRVLLVFEAK IPTSFHRKWW GLNLQFLLVF LCTFMQIVIC 751 800 ENSP00000420194/1-1088 VIWLYTAPPS SYRNQELEDE IIFITCHEGS LMALGFLIGY TCLLAAICFF ENSBTAP00000005042/1-1085 AIWLNTAPPS SYRNHELEDE IIFITCHEGS LMALGFLIGY TCLLAAICFF BACU006064/1-1081 AIWLNTAPPS SYRNHELEDE IIFITCHEGS LMALGFLIGY TCLLAAICFF ENSTTRP00000001326/1-1091 AIWLNTAPPS SYRNHELEDE IIFITCHEGS LMALGFLIGY TCLLAAICFF bmy_16369T0/1-609 AIWLNTAPPS SYRNHELEDE IIFITCHEGS LMALGFLIGY TCLLAAICFF 801 850 ENSP00000420194/1-1088 FAFKSRKLPE NFNEAKFITF SMLIFFIVWI SFIPAYASTY GKFVSAVEVI ENSBTAP00000005042/1-1085 FAFKSRKLPE NFNEAKFITF SMLIFFIVWI SFIPAYASTY GKFVSAVEVI BACU006064/1-1081 FAFKSRKLPE NFNEAKFITF SMLIFFIVWI SFIPAYASTY GKFVSAVEVI ENSTTRP00000001326/1-1091 FAFKSRKLPE NFNEAKFITF SMLIFFIVWI SFIPAYASTY GKFVSAVEVI bmy_16369T0/1-609 FAFKSRKLPE NFNEAKFITF SMLIFFIVWI SFIPAYASTY GKFVSAVEVI 851 900 ENSP00000420194/1-1088 AILAASFGLL ACIFFNKIYI ILFKPSRNTI EEVRCSTAAH AFKVAARATL ENSBTAP00000005042/1-1085 AILAASFGLL ACIFFNKVYI ILFKPSRNTI EEVRCSTAAH AFKVAARATL BACU006064/1-1081 AILAASFGLL ACIFFNKVYI ILFKPSRNTI EEVRCSTAAH AFKVAARATL ENSTTRP00000001326/1-1091 AILAASFGLL ACIFFNKVYI ILFKPSRNTI EEVRCSTAAH AFKVAARATL bmy_16369T0/1-609 AILAASFGLL ACIFFNKVYI ILFKPSRNTI EEVRCSTAAH AFKVAARATL 901 950 ENSP00000420194/1-1088 RRSNVSRKRS SSLGGSTGST PSSSISSKSN SEDPFP--QP ERQKQQQPLA ENSBTAP00000005042/1-1085 RRSNVSRQRS SSLGGSTGST PSSSISSKSN SEDPFPQQQP KRQKQPQPLA BACU006064/1-1081 RRSNVSRQRS SSLGGSTGST PPSSISSKSN SEDPFP--QP ERQKQQQPLA ENSTTRP00000001326/1-1091 RRSNVSRQRS SSLGGSTGST PSSSISSKSN SEDPFP--QP ERQKQQQPLA bmy_16369T0/1-609 RRSNVSRQRS SSLGGSTGST PSSSISSKSN SEDPFP--QP ERQKQQQPLA 951 1000 ENSP00000420194/1-1088 LT----QQEQ QQQPLTLPQQ QRSQQQPRCK QKVIFGSGTV TFSLSFDEPQ ENSBTAP00000005042/1-1085 LSPHNAQQPQ PRPPSTPQPQ PQSQQPPRCK QKVIFGSGTV TFSLSFDEPQ BACU006064/1-1081 LT-QCAQQPQ PRPPSTLQPQ QQSQQQPRCK QKVIFGSGTV TFSLSFDEPQ ENSTTRP00000001326/1-1091 LT-QCAQQPQ PRPPSTLQLQ QQSQQQPRCK QKVIFGSGTV TFSLSFDEPQ bmy_16369T0/1-609 LT-QCAQQPQ PRPPSTLQPQ QQSQQQPRCK QKVIFGSGTV TFSLSFDEPQ 1001 1050 ENSP00000420194/1-1088 KNAMAHRNST HQNSLEAQKS SDTLTRHEPL LPLQCGETDL DLTVQETGLQ ENSBTAP00000005042/1-1085 KTAVAHRNFT HQTSLEAQKN NDALTKHQAL LPLQCGETDS ELTSQETGLQ BACU006064/1-1081 KSAMAHRNST HQNSLEAQKN NDALTRHQAL LPLQCGETDS ELTAQETDLQ ENSTTRP00000001326/1-1091 KSAMAHRNST HQNSLEAQKN NDALTRHQAL LPLQCGETDS ELTVQETGLQ bmy_16369T0/1-609 KSAMAHRNST HQNSLEAQKN NDALTRHQAL LPLQCGETDS ELTAQETDLQ 1051 1100 ENSP00000420194/1-1088 GPVGGDQRPE VEDPEELSPA LVVSSSQSFV ISGGGSTVTE NVVNS ENSBTAP00000005042/1-1085 GPVGEDHQLE MEDPEEMSPA LVVSNSRSFV ISGGGSTVTE NMLRS BACU006064/1-1081 GPVGGDHQPE TEGPEEMSPA LVVSNSRSFV ISGGGSTVTE NMLRS ENSTTRP00000001326/1-1091 GPVGGDHQPE MEDPEEMSPA LVVSNSRSFV ISGGGSTVTE NMLRS bmy_16369T0/1-609 GPVGGDHQPE MEDPEEMSPA LVVSNSRSFV ISGGGSTVTE NMLRS