KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:25:30 2014 Check: 00 .. Name: ENSTTRP00000009266/1-348 Len: 352 Check: 6087 Weight: 1.00 Name: bmy_08658T0/1-233 Len: 352 Check: 2764 Weight: 1.00 Name: ENSP00000362144/1-351 Len: 352 Check: 3311 Weight: 1.00 Name: ENSBTAP00000005059/1-277 Len: 352 Check: 6710 Weight: 1.00 // 1 50 ENSTTRP00000009266/1-348 MAAAAGRSLL LLLSSRG--G GGAGGCGALT AGCFPALGVS RHRQQQHHRT bmy_08658T0/1-233 ---------- ---------- ---------- ---------- ---------- ENSP00000362144/1-351 MAAAAGRSLL LLLSSRGGGG GGAGGCGALT AGCFPGLGVS RHRQQQHHRT ENSBTAP00000005059/1-277 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009266/1-348 VHQRLSSWPS -GVVYCSTVV PSDDVTVVYQ NGLPVISVRL PSRRERCQFT bmy_08658T0/1-233 ---------- ---------- ---DVTVVYQ NGLPVISVRL PSRRERCQFT ENSP00000362144/1-351 VHQRIASWQN LGAVYCSTVV PSDDVTVVYQ NGLPVISVRL PSRRERCQFT ENSBTAP00000005059/1-277 ---------- ---------- ----VTVVYQ NGLPVISVRL PSRRERCQFT 101 150 ENSTTRP00000009266/1-348 LKPISDSVGV FLRQLQEEDR GIDRVAIYSP XXXXXXXXXX XXXXXXXXXX bmy_08658T0/1-233 LKPISDSVGV FLRQLQEEDR GIDRVAIYSP DGVRVAASTG IDLLLLDDFK ENSP00000362144/1-351 LKPISDSVGV FLRQLQEEDR GIDRVAIYSP DGVRVAASTG IDLLLLDDFK ENSBTAP00000005059/1-277 LKPISDSVGV FLRQLQEEDR GIDRVAIYSP DGVRVAASTG IDLLLLDDFK 151 200 ENSTTRP00000009266/1-348 XXXXXXXXXX XXXXXXLLSY ENAATLNDVK TLVQQLYTTL CIEQHQLNKE bmy_08658T0/1-233 LVINDLTYHV RPPKRDLLSY ENAATLNDVK TLVQQLYTTL CIEQHQLNKE ENSP00000362144/1-351 LVINDLTYHV RPPKRDLLSH ENAATLNDVK TLVQQLYTTL CIEQHQLNKE ENSBTAP00000005059/1-277 LVINDLTYHV RPPKRDLLSH ENAATLNDVK TLVQQLYTTL CIEQHQLNKE 201 250 ENSTTRP00000009266/1-348 RELIERLEDL KEQLAPLEKV RIEISRKAEK RTTLVLWGGL AYMATQFGIL bmy_08658T0/1-233 RELIERLEDL KEQLAPLEKV RIEISRKAEK RTTLVLWGGL AYMATQFGIL ENSP00000362144/1-351 RELIERLEDL KEQLAPLEKV RIEISRKAEK RTTLVLWGGL AYMATQFGIL ENSBTAP00000005059/1-277 RELIERLEDL KEQLAPLEKV RIEISRKAEK RTTLVLWGGL AYMATQFGIL 251 300 ENSTTRP00000009266/1-348 ARLTWWEYSW DIMEPVTYFI TYGSAMAMYA YFVMTRQEYV YPEARDRQYL bmy_08658T0/1-233 ARLTWWEYSW DIMEPVTYFI TYGSAMAMYA YFVMTRQ--- ---------- ENSP00000362144/1-351 ARLTWWEYSW DIMEPVTYFI TYGSAMAMYA YFVMTRQEYV YPEARDRQYL ENSBTAP00000005059/1-277 ARLTWWEYSW DIMEPVTYFI TYGSAMAMYA YFVMTRQEYV YPEARDRQYL 301 350 ENSTTRP00000009266/1-348 LFFHKGAKKS RFDLEKYNQL KDAIAQAEMD LKRLRDPLQV HL-PLRQIGE bmy_08658T0/1-233 ---------- ---------- ---------- ---VRIPLQV TFHEIVQCWL ENSP00000362144/1-351 LFFHKGAKKS RFDLEKYNQL KDAIAQAEMD LKRLRDPLQV HL-PLRQIGE ENSBTAP00000005059/1-277 LFFHKGAKKS RFDLEKYNQL KDAIAQAEMD LKRLRDPLQV HL-PLRQIGE 351 400 ENSTTRP00000009266/1-348 ED bmy_08658T0/1-233 SK ENSP00000362144/1-351 KD ENSBTAP00000005059/1-277 KD