KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:25:31 2014 Check: 00 .. Name: ENSTTRP00000007145/1-260 Len: 262 Check: 453 Weight: 1.00 Name: ENSBTAP00000005064/1-261 Len: 262 Check: 122 Weight: 1.00 Name: bmy_00438T0/1-208 Len: 262 Check: 3279 Weight: 1.00 Name: ENSP00000245046/1-261 Len: 262 Check: 1372 Weight: 1.00 // 1 50 ENSTTRP00000007145/1-260 MAGPELLLDS NIRLWVVLPI VIITFFVGMI RHYVSILLQS DKKLTQEQVS ENSBTAP00000005064/1-261 MAGPELLLDS NIRLWVVLPI VIITFFVGMI RHYVSILLQS DKKLTQEQVS bmy_00438T0/1-208 MAGPELLLDS NIRLWVVLPI VIITFFVGMI RHYV------ ---------- ENSP00000245046/1-261 MAGPELLLDS NIRLWVVLPI VIITFFVGMI RHYVSILLQS DKKLTQEQVS 51 100 ENSTTRP00000007145/1-260 DSQVLIRSMX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000005064/1-261 DRTCLIEQ-D VLNQNGKFVP NQSFLTRKYY FNNPEDGFFK KTKRKVVPPS bmy_00438T0/1-208 --QVLIRS-R VLRENGKYIP KQSFLTRKYY FNNPEDGFFK KTKRKVVPPS ENSP00000245046/1-261 DSQVLIRS-R VLRENGKYIP KQSFLTRKYY FNNPEDGFFK KTKRKVVPPS 101 150 ENSTTRP00000007145/1-260 XXXXPTMLTD MMKGNVTNVL PMILIGGWIN MTFSGFVTTK VPF-LTL-FK ENSBTAP00000005064/1-261 PVTDPTMLTD MMKGNVTNVL PMILIGGWIN MTFSGFVTTK VPFPLTLRFK bmy_00438T0/1-208 PM-------- ---------- ---------- -------TAK VPFPLTLRFK ENSP00000245046/1-261 PMTDPTMLTD MMKGNVTNVL PMILIGGWIN MTFSGFVTTK VPFPLTLRFK 151 200 ENSTTRP00000007145/1-260 PMLPQGNELL TLDASWVSSA SWYFLNVFGL RSIYSLILGQ DNAADQSRMM ENSBTAP00000005064/1-261 PMLQQGIELL TLDASWVSSA SWYFLNVFGL RSIYSLILGQ DNAADQSRMM bmy_00438T0/1-208 PMLQQGIELL TLDASWVSSA SWYFLNVFGL RSIYSLILGQ DNAADQSRMM ENSP00000245046/1-261 PMLQQGIELL TLDASWVSSA SWYFLNVFGL RSIYSLILGQ DNAADQSRMM 201 250 ENSTTRP00000007145/1-260 QEQMTGAAMA MPADTNKAFK TEWEALELTD HQWALDDVEE ELMAKDLHFE ENSBTAP00000005064/1-261 QEQMTGAAMA MPADTNKAFK TEWEALELTD HQWALDDVEE ELMAKDLHFE bmy_00438T0/1-208 QEQMTGAAMA MPADTNKAFK TEWEALELTD HQWALDDVEE ELMAKDLHFE ENSP00000245046/1-261 QEQMTGAAMA MPADTNKAFK TEWEALELTD HQWALDDVEE ELMAKDLHFE 251 300 ENSTTRP00000007145/1-260 GMFKKELQTS IF ENSBTAP00000005064/1-261 GMFKKELQTS IF bmy_00438T0/1-208 GMFKKELQTS IF ENSP00000245046/1-261 GMFKKELQTS IF