KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:31 2014 Check: 00 .. Name: ENSP00000254528/1-1053 Len: 1178 Check: 6097 Weight: 1.00 Name: ENSBTAP00000005074/1-1073 Len: 1178 Check: 5716 Weight: 1.00 Name: ENSTTRP00000007859/1-1042 Len: 1178 Check: 2780 Weight: 1.00 Name: bmy_17737T0/1-1091 Len: 1178 Check: 6348 Weight: 1.00 Name: BACU014685/1-958 Len: 1178 Check: 251 Weight: 1.00 // 1 50 ENSP00000254528/1-1053 ----MWQPRR PWPRVPWRWA LALLALVGAG LCHAGPQPGY PARPSARNKN ENSBTAP00000005074/1-1073 MWPPTWPRPR PRPRAPWRWA LALLALGGAG LCHASPQPGH PARPSARNKN ENSTTRP00000007859/1-1042 ----MWQRTR PRPRAP-CLA LALLALGGAG LCHADPQPRH PARPSARNKN bmy_17737T0/1-1091 -----MGNER IRAR------ -----LGRRE LC--DPDSEN EEMGSSPGPI BACU014685/1-958 -----MGNER IRAR------ -----LGRRE LC--DPDSEN EEMG------ 51 100 ENSP00000254528/1-1053 WCAYIVNKNV SCSVLEGSES FIQAQYNCAW NQMPCPSALV -----YRVNF ENSBTAP00000005074/1-1073 WCAYIVNKNV SCSVLEGSET FIQAQYNCGW NQKPCPSALM -----YRVNV ENSTTRP00000007859/1-1042 WCAYIVNKNV SCSVLEGSES FIQAQYNCAW NQMPCPSALV -----YRVNV bmy_17737T0/1-1091 WC-------- ----LDTVTE LVKMGARGCL QQQPVKRDAT FFFGSYRVNV BACU014685/1-958 ---------- ---------- ---------- ---------- -----Y---- 101 150 ENSP00000254528/1-1053 RPRYVTRYKT VTQLEWRCCP GFRGGDCQEG PKDPVKTLRP TPARPRNSLK ENSBTAP00000005074/1-1073 RPRYVTRYKT VTQLEWRCCP GFRGGNCQEG PRDPGRMPRP MPARPRNSMK ENSTTRP00000007859/1-1042 RPXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17737T0/1-1091 RPRYVTRYKT VTQLEWRCCP GFRGGDCQEG PRDPVKTPRP TPARPRNSVK BACU014685/1-958 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000254528/1-1053 KATDNEPSQF SEPRKTLSPT GTAQPSWGVD PKEGPQELQE KKIQVLEEKV ENSBTAP00000005074/1-1073 KPTDNEPSRV SEPKNTVSPT PAADPSQTRD PKQGPQELQE KKIQVLEEKV ENSTTRP00000007859/1-1042 XXXXSEPSRV SEPGKTLSPT PAAELSRTVD PKQGPLELQE KKIQVLEEKV bmy_17737T0/1-1091 KATDNEPSRV SEPEKTLSPT PAAELSRTVD PKQGPLELQE KKIQVLEEKV BACU014685/1-958 ----NEPSRV SEPEKTLSPT PAAELSRTVD LKQGPLELQE KKIQVLEEKV 201 250 ENSP00000254528/1-1053 LRLTRTVLDL QSSLAGVSEN LKHATQDDAS RTRAPGLSSQ HPK--PDTTV ENSBTAP00000005074/1-1073 LRLTRTVLDL QSSVAGVSEN LKHAVQDDAS KMLASWLSNL HPRPTPISAV ENSTTRP00000007859/1-1042 LRLTRTVLDL QSSIAGVNEN LKHSIQDDAS KMLASWLSNL HPQPVPDSAV bmy_17737T0/1-1091 LRLTRTVLDL QSSIAGVNEN LKHSIQDDAS KMLASWLSNL HPQPVPDSAV BACU014685/1-958 LRLTRTVLDL QSSIAGVNEN LKHSIQDDAS KMLASWLSNL HPQPVPDSAV 251 300 ENSP00000254528/1-1053 SGDTETGQSP GVFNTKESGM KDIKSELAEV KDTLKNKSDK LEELDGKVKG ENSBTAP00000005074/1-1073 GGEPETVQPP GILSNKESGM KDIKSELAEV KDALKTKSDK LEELDGKVKG ENSTTRP00000007859/1-1042 GGEPETVQLP GVLNSKESGM KDIKSELAEV KDALKTKSSK LDELDGKVKG bmy_17737T0/1-1091 GGEPETVQLP GVLNNKESGM KDIKSELAEV KDALKTKSSK LEELDGKVKG BACU014685/1-958 GGEPETVQLP GVLNNKESGM KDIKSELAEV KDALKTKSSK LEELDGKVKG 301 350 ENSP00000254528/1-1053 YEGQLRQLQE AAQGPTVTMT TNELYQAYVD SKIDALREEL MEGMDRKLAD ENSBTAP00000005074/1-1073 YEGQLRQLQE AAQGPTVTMT TSELFQAYVD SKIDALREEL MEGMDRKLAD ENSTTRP00000007859/1-1042 YEGQLRQLQE AAQGPTVTMT TNELYQAYVD SQIDALREEL MEGMDRKLAD bmy_17737T0/1-1091 YEGQLKQLQE AAQGPTVTMT TNELYQAYVD SQIDALREEL MEGMDRKLAD BACU014685/1-958 YEGQLKQLQE AAQGPTVTMT TNELYQAYVD SQIDALREEL MEGMDRKLAD 351 400 ENSP00000254528/1-1053 LKNSCEYKLT GLQQQCDDYG SSYLGVIELI GEKETSLRKE INNLRARLQE ENSBTAP00000005074/1-1073 LKNSCEYKLI GFQQHCDDYG SSYLGVIELI GEKEAKLRKE ISDLQARVQD ENSTTRP00000007859/1-1042 LKNSCEYKLI GLQQHCDDYG NTYLGVMELI -EKETN-RKE ISDLRARIQD bmy_17737T0/1-1091 LKNSCEYKLI GLQQHCDDYG SSYLGVIELI GEKETNLRKE ISDLRARVQD BACU014685/1-958 LKNSCEYKLI GLQQHCDDYG SSYLGVIELI GEKETNLRKE ISDLRARVQD 401 450 ENSP00000254528/1-1053 PSAQANCCDS EKNGDIGQQI KTLDQKIERV AEATRMLNGR LDNEFDRLIV ENSBTAP00000005074/1-1073 PPAHANCCDG TKPGDLGPQI KMLDQKIERV SEATRMLNAR LDNEFDRLEA ENSTTRP00000007859/1-1042 PPSRANCCDG AKNGDFGQQV KTLDQKIERV AEATRMLNGR LDNEFDRLVV bmy_17737T0/1-1091 PSTRANCCDG AEHGDFGQQI KTLDQKIERV AEATRMLNGR LDNEFDRLVV BACU014685/1-958 PSTRANCCDG AKHGDFGQQI KMLDQKIERV AEATRMLNGR LDNEFDRLVV 451 500 ENSP00000254528/1-1053 PEPDVDFDAK WNELDARINV TEKNAEEHCF YIEETLRGAI NGEVGDLKQL ENSBTAP00000005074/1-1073 PEPDVDFDAR WHELDARINV TERNAEEHCF YIEETLRGTI SGEVDGLRQL ENSTTRP00000007859/1-1042 PEPDVDFDAR WNELDARINV TEKNAEEHCF YIEETLRGTI SGEVDDLKHL bmy_17737T0/1-1091 PEPDVDFDAR WNELDARINV TEKNAEEHCF YIEETLRGTI SGEVDDLKQL BACU014685/1-958 PEPDVDFDAR WNELDARINV TEKNAEEHCF YIEETLRGTI SGEVDDLKQL 501 550 ENSP00000254528/1-1053 VDQKIQSLED RLGSVLLQMT NNTGAELSPP GAAALPGVSG SGDERVMMEL ENSBTAP00000005074/1-1073 LDQKIQSLEE RLGSALLEMV NGSEMVPAPP -VAAPPTVSG AGPPQVMMEL ENSTTRP00000007859/1-1042 LDQKIQSLEE RLGSALLAMA NGSEAELAPP -ASALPDGSG AGNKQVMVEL bmy_17737T0/1-1091 LXQKIQSLEE RLGSALLAMA NGSEAELAPP -ASALPGGSG AGNEQVMVEL BACU014685/1-958 LDQKIQSLEE RLGSALLAMA NGSEAELAPP -ASAPPGGSG AGNEQVLVEL 551 600 ENSP00000254528/1-1053 NHLKDKVQVV EDICLLNIQG KPHGMEGALP NREDRAVRDS LHLLKSLNDT ENSBTAP00000005074/1-1073 KRLKDQVRVV EDMCLQNFRG EPRGMEDTLR NG-----GEM VSLLRSLNDT ENSTTRP00000007859/1-1042 NHLKDKVQVV EDMCLQNFQG EPRGREDTLR NGDDPSAGDA LSLLKSLNDT bmy_17737T0/1-1091 NHLKGKVQVV EDMCLQNFQG EPRGREDTLR KGDDSSAGDT LSLLKSLNDT BACU014685/1-958 NHLKGKVQVV EDMCLQNFQG EPRGREDTLR KGDDSSAGDP LSLLKSLNDT 601 650 ENSP00000254528/1-1053 MHRKFQETEQ TIQKLQQDFS FLYSQLNHTE NDVTHLQKEM SNCRAGENAG ENSBTAP00000005074/1-1073 MQGKFQDTER SIQRLQQDFS FLYSWLNHTD DHLRRLQNEL SGGRGGKKAA ENSTTRP00000007859/1-1042 MHRKFQETEH SIQRLQQNFS FLYSQLNHTE DHVSHLHNEL SSGREGKKAA bmy_17737T0/1-1091 MHRKFQEAER SIQRLQQDLS FLYSHLNRTE DHVSHLHNEL SSGREGKKAA BACU014685/1-958 MHRKFQETER SIQRLQQDFS FLYSQLNRTE DHVSHLHNEL SSGREGKKAA 651 700 ENSP00000254528/1-1053 MGRFTKVGEQ ERTVDTLPSP QHPVAHCCSQ LEERWQRLQS QVISELDACK ENSBTAP00000005074/1-1073 GGGWSKVGEP GRTEAPLPSP QAPPAHCCDQ LEGRWQRLQD LVLSELDTCK ENSTTRP00000007859/1-1042 GRGSPKGAEP ------LPSP PAASVPCCDQ LEERWQRLQG QVLAELDACK bmy_17737T0/1-1091 GRGSSKGGEP ------LPSP PAASVHCCDQ LEGRWQRLQG QVLAELDTCK BACU014685/1-958 GRGSSNGGEP ------LPSP PAASLHCCDQ LEERWQRLQG QVLAELDTCK 701 750 ENSP00000254528/1-1053 ECTQGVQREV SMVEGRVSHM EKTCSKLDSI SGNLQRIKEG LNKHVSSLWN ENSBTAP00000005074/1-1073 EKTHGVQREV SVVEDRVSHV EKTCSKLDSI SGSLQKIKEG LNKHVNSLWS ENSTTRP00000007859/1-1042 EKTHGVQRGV SVVEDRVSHM EKTCSKLDSI SGSLQKIKEG LNKHVSSLWS bmy_17737T0/1-1091 EKTHGVQRGV SVVEDRLSHM EKTCSKLDSI SGSLQKIKEG LNKHVSSLWS BACU014685/1-958 EKTHGVQRGV SVVENRLSHM EKTCSKLDSI SGSLQKIKEG LNKHVSSLWS 751 800 ENSP00000254528/1-1053 CVRQMNGTLR SHSRDISGLK NSVQQFYSHV FQISTDLQDL VKFQPSAK-- ENSBTAP00000005074/1-1073 CIRQMNGTLR THSREISSLK NSVQQFYSHV FQISADLQDL IRFQPSAK-- ENSTTRP00000007859/1-1042 CVRQMNGTLR AHSRDISGLK NSVQQFYSHV FQISTDLQDL IRFQPSAE-- bmy_17737T0/1-1091 CVRQMNGTLR THSRDISGLK NSVQQIYSHV FQISTDLQDL IRFQPSASKW BACU014685/1-958 CVRQMNGTLQ THSRDISGLK NSVQQFYSHV FQISTDLQDL IRFRPSAT-- 801 850 ENSP00000254528/1-1053 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005074/1-1073 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007859/1-1042 ---------- ---------- ---------- ---------- ---------- bmy_17737T0/1-1091 TFTIPFLGVQ AGCPHPVVAA LVFAGGPSPG TPRRPAPKAH TFQGAMPTES BACU014685/1-958 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000254528/1-1053 ---------- ---------- ---------- --APSPPP-- ---------- ENSBTAP00000005074/1-1073 ---------- ---------- ---------- --TPQPPPRG KTPEDVGKPS ENSTTRP00000007859/1-1042 ---------- ---------- ---------- --APQPLPQG KAP------- bmy_17737T0/1-1091 HRGACGRAVK SEVLNPVXFF PLYKCSAEEP SAAPQPLPQG KAPH------ BACU014685/1-958 ---------- ---------- -------EEP SAAPQPLPQG KVPH------ 901 950 ENSP00000254528/1-1053 -PAEAPKEPL QPEPAPPRP- SGPATAEDP- -----GRRPV LPQRPPEERP ENSBTAP00000005074/1-1073 SPAEAPTELS TPVLTPLLPP STPSPPRDP- -----GQKPV LPKRRPPPL- ENSTTRP00000007859/1-1042 -------TPS TPALTPP--- ADPSTAEDP- -----GQQPV LPKRPPG--- bmy_17737T0/1-1091 -PAEAPTKPP APALTPPPPS SAPPPPKDPG QQPYTGQQPV LPKRRPRPLP BACU014685/1-958 -LAEAPTKPP APALTPPPPS SAPPPPKDPG QQPYTGQQPV LPKRRPRPLP 951 1000 ENSP00000254528/1-1053 P--QP----- ---PGSTGVI AETGQAGPPA GAGVSGRGLP RGVDGQTGSG ENSBTAP00000005074/1-1073 ---RPGWTGL PFLPGSTGVI METGEAGPPG RMGVSGRGLP RGVDGQTGQR ENSTTRP00000007859/1-1042 -------TGL PFLPGSTGVI METGEAGPPG RMGMSGRGLP RGVDGQTGQG bmy_17737T0/1-1091 PLLRPGWTGL PFLPGSTGVI METGEAGPPG RMGMSGRGLP RGVDGQTGQG BACU014685/1-958 PLLRPGWTGL PFLPGSTGVI METGEAGPPG RMGMSGRGLP RGVDGQTGQG 1001 1050 ENSP00000254528/1-1053 TVPGAEGFAG APGYPKSPPV ASPGAPVPSL VSFSAGLTQK PFPSDGGVVL ENSBTAP00000005074/1-1073 PIPSAEGYAG APGYPKSPPA ASPGAPVPSL VSFSVGLTRK PFPSDAGVVL ENSTTRP00000007859/1-1042 PIPRAEGYAG APGYPKSPPV ASPGVPAPSL VSFSAGLTRK PFPSDAGVVL bmy_17737T0/1-1091 PIPRAEGYAG APGYPKSPPV TSPGV----- ---------- ---------- BACU014685/1-958 PIPRAEGYAG APGYPKSPPV ASPGVPAPSL VSFSAGLTRK PFPSDAGVVL 1051 1100 ENSP00000254528/1-1053 FNKVLVNDGD VYNPSTGVFT APYDGRYLIT ATLTPERDAY VEAVLSVSNA ENSBTAP00000005074/1-1073 FNKVLVNDGD VYDPSTGVFT APYDGRYLIT ATLTPERDAY VEAVLSVANA ENSTTRP00000007859/1-1042 FNKVLVNDGD VYDPSTGVFT APYDGRYLIT ATLTPERDTY VEAVLSVANA bmy_17737T0/1-1091 ---------- --------FT APYDGRYLIT ATLTPERDTY VEAVLSVANA BACU014685/1-958 FNKVLVNDGD VYDPSTGVFT APYDGRYLIT ATLTPERDTY VEAVLSVANA 1101 1150 ENSP00000254528/1-1053 SVAQLHTAGY RREFLEYHRP PGALHTCGGP GAFHLIVHLK AGDAVNVVVT ENSBTAP00000005074/1-1073 SVAQLHTAGY RREFLEYHRP QGAPHTCGGP GAFHLIVHLK AGDGVNIVVT ENSTTRP00000007859/1-1042 SVAQLHTAGY KREFLEYHRP QGAVHTCGGP GAFHLIVHLK AGDGVNIVVT bmy_17737T0/1-1091 SVAQLHTAGY KREFLEYHRP QGALHTCGGP GAFHLIVHLK AGDGVNIVVT BACU014685/1-958 SVAQLHTAGY KREFLEYHRP QGALHTCGGP GAFHLIVHLK AGDGVNIVVT 1151 1200 ENSP00000254528/1-1053 GGKLAHTDFD EMYSTFSGVF LYPFLSHL ENSBTAP00000005074/1-1073 GGRLAHTDFD EMYSTFSGVF LYPFLSHL ENSTTRP00000007859/1-1042 GGRLAHTDFD EMYSTFSGVF LYPFLSHL bmy_17737T0/1-1091 GGRLAHTDFD EMYSTFSGVF LYPFLSHL BACU014685/1-958 GGRLAHTDFD EMYSTFSGVF LYPFLSHL