KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:33 2014 Check: 00 .. Name: ENSP00000314420/1-1290 Len: 1588 Check: 1826 Weight: 1.00 Name: ENSBTAP00000005076/1-1283 Len: 1588 Check: 2136 Weight: 1.00 Name: BACU001223/1-1370 Len: 1588 Check: 7426 Weight: 1.00 Name: bmy_01715T0/1-820 Len: 1588 Check: 1360 Weight: 1.00 Name: ENSTTRP00000009787/1-1213 Len: 1588 Check: 6902 Weight: 1.00 // 1 50 ENSP00000314420/1-1290 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005076/1-1283 ---------- ---------- ---------- ---------- ---------- BACU001223/1-1370 MGRISGLVPS RFLTLLAHLV VVITLFWSRD SNIQACLPLK FTPEEYEKQD bmy_01715T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009787/1-1213 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000314420/1-1290 ---------- ---------- ---------- ---------M SGPLEGADGG ENSBTAP00000005076/1-1283 ---------- ---------- ---------- ---------R SGPLEGAEGG BACU001223/1-1370 MQLVAALSVT LALFAVELAG FFSGVSMFNS TQSLICILFT CAPFLSATAA bmy_01715T0/1-820 ---------- ---------- ---------- ---------M SXPLEGADGG ENSTTRP00000009787/1-1213 ---------- ---------- ---------- ---------M SGPLEGADGG 101 150 ENSP00000314420/1-1290 GDPRPGESFC PGGVPSPGP- ---------- ---------- ---------- ENSBTAP00000005076/1-1283 GDPRPGEPFC PGGGPSPGP- ---------- ---------- ---------- BACU001223/1-1370 TAP-PAASAG EGGPPAPPPN LTSNRRLQQT QAQVDEVVDI MRVNVDKVLE bmy_01715T0/1-820 GDPRPGESFC PGGAPSPGP- ---------- ---------- ---------- ENSTTRP00000009787/1-1213 GDPRPGESFC PGGAPSPGP- ---------- ---------- ---------- 151 200 ENSP00000314420/1-1290 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005076/1-1283 ---------- ---------- ---------- ---------- ---------- BACU001223/1-1370 RDQKLSELDD RADALQAGAS QFETSAAKLK RKYWWKNLKM MIILGVICAI bmy_01715T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009787/1-1213 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000314420/1-1290 ---------- -------PQ- ---------- ---HRPCPGP ---SLADDTD ENSBTAP00000005076/1-1283 ---------- -------PE- ---------- ---HRPCPGP ---SLADDTD BACU001223/1-1370 ILIIIIGAIQ IPTVSFSPEE LNTTALAEFG EYIHKGQPQT VQKGLADDTD bmy_01715T0/1-820 ---------- -------PQ- ---------- ---HRPCPGP ---SLADDTD ENSTTRP00000009787/1-1213 ---------- -------PQ- ---------- ---HRPCPGA ---SLADDTD 251 300 ENSP00000314420/1-1290 ANSNGSSGNE SNGHESRGAS QRSSHSSSSG NGKDSALLET TESSKSTNSQ ENSBTAP00000005076/1-1283 ANSNGSSGNE SNGPESRGAS QRSSHSSSSG NGKDSALLET TESSKSTNSQ BACU001223/1-1370 ANSNGSSGNE SNGPESRGAS QRSSHSSSSG NGKDSALLDT TESSKSTNSQ bmy_01715T0/1-820 ANSNGSSGNE SNGPESRGAS QRSSHSSSSG NGKDSALLDT TESSKSTNSQ ENSTTRP00000009787/1-1213 ANSNGSSGNE SNGPESRGAS QRSSHSSSSG NGKDSALLDT TESSKSTNSQ 301 350 ENSP00000314420/1-1290 SPSPPSSSIA YSLLSASSEQ DNPSTSGC-- -SSEQSARAR TQKELMTALR ENSBTAP00000005076/1-1283 SPSPPSSSIA YSLLSASSEP DNPSTSGC-- -SSEQSARAR TQKELMTALR BACU001223/1-1370 SPSPPSSSIA YSLLSASSEQ DNPSTSGCRF VSSEQSARAR TQKELMTALR bmy_01715T0/1-820 SPSPPSSSIA YSLLSASSEQ DNPSTSGCRF VSSEQSARAR TQKELMTALR ENSTTRP00000009787/1-1213 SPSPPSSSIA YSLLSASSE- DNPSTSGC-- -SSEQSARAR TQKELMTALR 351 400 ENSP00000314420/1-1290 ELKLRLPPER RGKGRSGTLA TLQYALACVK QVQANQEYYQ QWSLEEGEPC ENSBTAP00000005076/1-1283 ELKLRLPPER RGKGRSGTLA TLQYALACVK QVQANQEFYQ QWSLEEGEPC BACU001223/1-1370 ELKLRLPPER RGKGRSGTLA TLQYALACVK QVQANQEYYQ QWSLEEGEPC bmy_01715T0/1-820 ELKLRLPPER RGKGRSGTLA TLQYALACVK QVQ------- ---------- ENSTTRP00000009787/1-1213 ELKLRLPPER RGKGRSGTLA TLQYALACVK QVQANQEYYQ QWSLEEGEPC 401 450 ENSP00000314420/1-1290 SMDMSTYTLE ELEHITSEYT LQNQDTFSVA VSFLTGRIVY ISEQAAVLLR ENSBTAP00000005076/1-1283 AMDMSTYTLE ELEHVTSEYT LRNQDTFSVA VSFLTGRIVY ISEQAGVLLR BACU001223/1-1370 AMDMSTYTLE ELEHITSEYT LRNQDTFSVA VSFLTGRIVY ISEQAGILLR bmy_01715T0/1-820 ---------- ---------- ---------- -----GRIVY ISEQAGILLR ENSTTRP00000009787/1-1213 AMDMSTYTLE ELEHITSEYT LRNQDTFSVA VSFLTGRIVY ISEQAGILLR 451 500 ENSP00000314420/1-1290 CKRDVFRGTR FSELLAPQDV GVFYGSTAPS RLPTWGTGAS AGSGLRDFTQ ENSBTAP00000005076/1-1283 CKRDVFRGAR FSELLAPQDV GVFYGSTTPS RLPTWGPGTS AGSGLKDFTQ BACU001223/1-1370 CKQDVFRGAR FSELLAPQDV GVFYGSTAPS RLPTWGTGVS AGSGLKDFTQ bmy_01715T0/1-820 CKQDVFRGAR FSELLAPQDV GVFYGSTAPS RLPTWGTGAL AGSGLKDFTQ ENSTTRP00000009787/1-1213 CKQDVFRGAR FSELLAPQDV GVFYGSTAPS RLPTWGTGAS AGSGLKDFTQ 501 550 ENSP00000314420/1-1290 EKSVFCRIRG GPDRDPGPRY QPFRLTPYVT KIRVSDGAPA QPCCLLIAER ENSBTAP00000005076/1-1283 EKSVFCRIRG GPDRDPGPRY QPFRLTPYVT KIRVSDGAPA QPCCLLIAER BACU001223/1-1370 EKSVFCRIRG GPDRDPGPRY QPFRLTPYVT KIRVSDGAPA QPCCLLIAER bmy_01715T0/1-820 EKSVFCRIRG GPDRDPGPRY QPFRLTPYVT KIRVSDGAPA QPCCLLIAER ENSTTRP00000009787/1-1213 EKSVFCRIRG GPDRDPGPRY QPFRLTPYVT KIRVSDGAPA QPCCLLIAER 551 600 ENSP00000314420/1-1290 IHSGYEAPRI PPDKRIFTTR HTPSCLFQDV DERAAPLLGY LPQDLLGAPV ENSBTAP00000005076/1-1283 IHSGYEAPRI PPDKRIFTTR HTPSCLFQDV DERAAPLLGY LPQDLLGAPV BACU001223/1-1370 IHSGYEAPRI PPDKRIFTTR HTPSCLFQDV DERAAPLLGY LPQDLLGAPV bmy_01715T0/1-820 IHSGYEAPRI PPDKRIFTTR HTPSCLFQDV DERAAPLLGY LPQDLLGAPV ENSTTRP00000009787/1-1213 IHSGNEAPRI PPDKRIFTTR HTPSCLFQDV DERAAPLLGY LPQDLLGAPV 601 650 ENSP00000314420/1-1290 LLFLHPEDRP LMLAIHKKIL QLAGQPFDHS PIRFCARNGE YVTMDTSWAG ENSBTAP00000005076/1-1283 LLFLHPEDRP LMLAIHKKIL QLAGQPFDHS PIRFCARNGE YVTMDTSWAG BACU001223/1-1370 LLFLHPEDRP LMLAIHKKIL QLAGQPFDHS PIRFCARNGE YVTMDTSWAG bmy_01715T0/1-820 LLFLHPEDRP LMLAIHKKIL QLAGQPFDHS PIRFCARNGE YVTMDTSWAG ENSTTRP00000009787/1-1213 LLFLHPEDRP LMLAIHKKIL QLAGQPFDHS PIRFCARNGE YVTMDTSWAG 651 700 ENSP00000314420/1-1290 FVHPWSRKVA FVLGRHKVRT APLNEDVFTP PAPSPAPSLD TDIQELSEQI ENSBTAP00000005076/1-1283 FVHPWSRKVA FVLGRHKVRT APLNEDVFTP PVPSPALSLD SDIQELSEQI BACU001223/1-1370 FVHPWSRKVA FVLGRHKVRT APLNEDVFTP PVPSPALSLD PDIQELSEQI bmy_01715T0/1-820 FVHPWSRKVA FVLGRHKVRT GPLNEDVFTP PVPSPALSLD PDIQELSEQI ENSTTRP00000009787/1-1213 FVHPWSRKVA FVLGRHKVRT APLNEDVFTP PVPSPALSLD PDIQELSEQI 701 750 ENSP00000314420/1-1290 HRLLLQPVHS PSPTGLCGVG AVTSPGPLHS PGSSSDSNGG DAEGPGPPAP ENSBTAP00000005076/1-1283 HRLLLQPVHS PSPTGLCGVG PVPSSGPLLS PGSSSDSNGG DAEGPGPPAP BACU001223/1-1370 HRLLLQPVHS PSPTGFCGVG PVTSPGPLLS PGSSSASNRG DAEGPGPPAP bmy_01715T0/1-820 HRLLLQPVHS PSPTGFCGVG PVTSPGPLLS PGSSSASNGG DAEGPGPPAP ENSTTRP00000009787/1-1213 HRLLLQPVHS PSPTGFCGVG QVTSPGPLLS PGSSSASNGG DAEGPGPPAP 751 800 ENSP00000314420/1-1290 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005076/1-1283 ---------- ---------- ---------- ---------- ---------- BACU001223/1-1370 ---------- ---------- ---------- ---------- ---------- bmy_01715T0/1-820 SVLPSPEESR PPPFLSRPAL IVISASPHWG LFLALSPGLP RLATPPPNAA ENSTTRP00000009787/1-1213 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000314420/1-1290 ------VTFQ QICKDVHLVK HQGQQLFIES RARPQSRPRL ---------- ENSBTAP00000005076/1-1283 ------VTFQ QICKDVHLVK HQGQQLFIES RARPLPRPRV ---------- BACU001223/1-1370 ------VTFQ QICKDVHLVK HQGQQLFIES RARPLPRPRV ---------- bmy_01715T0/1-820 HCPAPQVTFQ QICKDVHLVK HQGQQLFIES RARPLPRPRV PGELVRVWVR ENSTTRP00000009787/1-1213 ------VTFQ QICKDVHLVK HQGQQLFIES RARPLPRPRV ---------- 851 900 ENSP00000314420/1-1290 ---------- ---------- ---PATGTFK AKALPCQSPD PELEAGSAPV ENSBTAP00000005076/1-1283 ---------- ---------- ---PATGTFK AKTLPCQ--S PDLEAAPAPI BACU001223/1-1370 ---------- ---------- ---P------ ---------D PELEVAPAPI bmy_01715T0/1-820 SEAWGGAGPM TFTPTQRSFS LLGPATGTFK AKTLPCQSAD PELEVAPAPI ENSTTRP00000009787/1-1213 ---------- ---------- ---PAAGTFK AKTLPCQSAD PELEVAPALT 901 950 ENSP00000314420/1-1290 QAPLALVPEE AERKEASSCS YQQINCLDSI LRYLESCNLP STTKRKCASS ENSBTAP00000005076/1-1283 QAPVALAAED AERKEASSCS YQQINCLDSI LRYLESCNLP STAKRKCASS BACU001223/1-1370 QAPLALAPEE AERKEASSCS YQQINCLDSI LRYLESCNLP STTKRKCTSS bmy_01715T0/1-820 QAPLALAPEE AERKEASSCS YQQINCLDSI LRYLESCNLP STTKRKCTSS ENSTTRP00000009787/1-1213 QAPLASAPEE AERKEASSCS YQQINCLDSI LRYLESCNLP STTKRKCTSS 951 1000 ENSP00000314420/1-1290 SSYTTSSASD DDRQRTGPVS VGTKKDPPSA ALSGEGATPR KEPVV-GGTL ENSBTAP00000005076/1-1283 SSCTASSASD DDKQRAGPVS VGAKKD-PSA VLPGEGATPL KEPVVGGGAL BACU001223/1-1370 SSCTTSSASD EDRHRAGAVS VGAEKD-PSA VLSGEGAAPL KEPVVGGGAL bmy_01715T0/1-820 SSCTASSASD EDRQRAGAVS VGAEKD-PSA VLSGEGAAPL KEPVVGGGAL ENSTTRP00000009787/1-1213 SSCTASSASD EDRQRAGAVS VGTEKD-PSA VLSGEGAAPL KEPVVGGGAL 1001 1050 ENSP00000314420/1-1290 SPLALANKAE SVVSVTSQCS FSSTIVHVGD KKPPESDIIM MEDLPGLAPG ENSBTAP00000005076/1-1283 SPLALANKAE SVVSITSQCS FSSTIVHVGD KKPPESDIIM MEDLPSLPPG BACU001223/1-1370 SPLALANKAE SVVSVTSQCS FSSTIVHVGD KKPPESDIIM MEDLPGPPPG bmy_01715T0/1-820 SPLALANKAE SVVSVTSQCS FSSTIVHVGD KKPPESGT-- -----GVAEG ENSTTRP00000009787/1-1213 SPLALASKAE SVVSVTSQCS FSSTIVHVGD KKPPESDIIM MEDLPGLPLG 1051 1100 ENSP00000314420/1-1290 PAPSPAPSPT VAPDPAPDAY RPVGLTKAVL SLHTQKEEQA FLSRFRDLGR ENSBTAP00000005076/1-1283 PAPSPAPSPT VAPDPAPDAY RPVGLTKAVL SLHTQKEEQA FLSRFRDFSR BACU001223/1-1370 PAPSPVPSPT VAPDPAAGAY RPVGLTKAVL SLHTQKEEQA FLSRFRDLGR bmy_01715T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009787/1-1213 PAPSPAPSPT VAPDPAAGAY RPVGLTKAVL SLHTQKEEQA FLSRFRDHGR 1101 1150 ENSP00000314420/1-1290 LRGLDSSSTA PSALGERGCH HGPAPPSRRH HCRSKAKRSR HHQNPRAEAP ENSBTAP00000005076/1-1283 LRGLDSSSTA PSAPGERGCH HSLAIPGRRH HCRSKAKRSR HHQTTRAEAP BACU001223/1-1370 LRGLDGSSTG PSAP------ ---------- ---------- ---------- bmy_01715T0/1-820 -----GGARA PSGP------ ---------- ---------- ---------- ENSTTRP00000009787/1-1213 LRGLDGSSTA PSGPGELXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1151 1200 ENSP00000314420/1-1290 CYVSHPSPVP PSTPWPTPPA TTPFPAVVQP YPLPVFSPRG GPQPLPPAPT ENSBTAP00000005076/1-1283 GYISQPSPVP PSAPWPPPPA TPPFPAVVQP YPLPVFPPRG GSQPLPPAPT BACU001223/1-1370 ---------- ---------- ---------- ---------- ---------- bmy_01715T0/1-820 ---------- ---------- ---------- ---------- -PASVPP--- ENSTTRP00000009787/1-1213 XXXXXXXXXX XXXPWP-PPA TPPFPAVVQP CPLPAFSPRG GPQPLPPAPT 1201 1250 ENSP00000314420/1-1290 SVPPAAFPAP LVTPMVALVL PNYLFPTPSS YPYGALQTPA EGPPTPASHS ENSBTAP00000005076/1-1283 SVPPAAFPAP LVTPMVALVL PNYLFPTPST YPYGAPQMPA EGPPTPASRS BACU001223/1-1370 -----AFPAP LVTPVVALVL PNYLFPAPPT YPCGVPQTPT SHSPSPSLPL bmy_01715T0/1-820 --PPPAFSRP LV-------- ---------- -PDGEKEPPS ---------- ENSTTRP00000009787/1-1213 SVSPAAFPAP LVTPVVALVL PNYLFPAPPT YPCGAPQAPA SHSPSPSLPL 1251 1300 ENSP00000314420/1-1290 PSPSLPALAP SPPHRPDSPL FNSRCSSPLQ LNLLQLEELP RAEGAAVAGG ENSBTAP00000005076/1-1283 PSPSLP---P SPPHRSDSPL FNSRCSSPLQ LNLLQLEEAP RGEGGAAAAG BACU001223/1-1370 P----P---P SPPRHPDSPL FNSRCSSPLQ LNLLQLEEPP RVE------- bmy_01715T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009787/1-1213 P----P---P SPPRRPDSLL FNSRCSSPLQ LNLLQLEEPP RVE------- 1301 1350 ENSP00000314420/1-1290 PGSSAGPPPP SAEAAEPEAR LAEVTESSNQ DALSGSSDLL ELLLQEDSRS ENSBTAP00000005076/1-1283 SGSSAGHPPP SEETAEPEAR LAEVTESSNQ DALSGSSDLL ELLLQEDSRS BACU001223/1-1370 -GSSAGRPAP SEETADPAAR LVEITESSNQ DALSGSSDLL ELLLQEDSRS bmy_01715T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009787/1-1213 -GSSAGHPPP SEETADPAAR PVEITESSNQ DALSGSSDLL ELLLQEDSRS 1351 1400 ENSP00000314420/1-1290 GTGSAASGSL GSGLGSGSGS GSHEGGSTSA SITRSSQSSH TSKYFGSIDS ENSBTAP00000005076/1-1283 GTGSAASGSL ASGL--GSGS GSHEGGSTSA SITRSSQSSH TSKYFGSIDS BACU001223/1-1370 GTGSAASGSL GS----GSGS GSHEGSSTSA SVTRSCQSSH TSKYFGSIDS bmy_01715T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009787/1-1213 GTGSAASGSL GSGLGSGSGS GSHEGSSTSA SITRSSQSSH TSKYFGSVDS 1401 1450 ENSP00000314420/1-1290 SEAEAGAARG GAEPGDQVIK YVLQDPIWLL MANADQRVMM TYQVP-SRDM ENSBTAP00000005076/1-1283 SEAEAGAAQA RAEPGDQVIK YVLQDPIWLL MANADQRVMM TYQVPSSRDM BACU001223/1-1370 SEAEAGAAHA RAEPGDQVIK YVLQDPIWLL MANADQHVMM TYQVP-SRDM bmy_01715T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009787/1-1213 SEAEAGAARA RAEPGDQVIK YVLQDPIWLL MANADQHVMM TYQVP-SRDM 1451 1500 ENSP00000314420/1-1290 TSVLKQDRER LRAMQKQQPR FSEDQRRELG AVHSWVRKGQ LPRALDVMAC ENSBTAP00000005076/1-1283 ASVLKQDRER LRAMQKQQPR FSEDQRRELG AVHSWVRKGQ LPRALDVMAC BACU001223/1-1370 ASVLKQDRER LRAMQKQQPR FSEDQRRELG AVHSWVRKGQ LPRALDVMTC bmy_01715T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009787/1-1213 ASVLKQDRER LRAMQKQQPR FSEDQRRELG AVHSWVRKGQ LPRALDVMAC 1501 1550 ENSP00000314420/1-1290 VDCGSSTQDP GHPDDPLFSE LDGLGLEPME EGGGEQGSSG GGSGEGEGCE ENSBTAP00000005076/1-1283 VDCGSSTQEP GHPDDPLFSE VDGLGLEPME EGGGE-GGGG GGEGEGSDEA BACU001223/1-1370 VDCGSSTQDP GHPDDPLFSE MDGLGLEPME EGGGE-GGGG GGEGEGGDEA bmy_01715T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009787/1-1213 VDCGSSTQDP GHPDDPLFSE MDGLGLEP-- ---------- ---------- 1551 1600 ENSP00000314420/1-1290 EAQGGAKASS SQDLAMEEEE EGRSSSSPAL PTAGNCTS ENSBTAP00000005076/1-1283 QAQAGARVSS SQDLAMEEEE QGGSSPSPAL PATENGTS BACU001223/1-1370 QAQAGATVSS SQDLAMEEEE QGGSSSSLAL PAAENGTS bmy_01715T0/1-820 ---------- ---------- ---------- -------- ENSTTRP00000009787/1-1213 ---------- ---------- ---------- --------