KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:34 2014 Check: 00 .. Name: bmy_15108T0/1-496 Len: 560 Check: 6555 Weight: 1.00 Name: ENSP00000358414/1-508 Len: 560 Check: 4125 Weight: 1.00 Name: ENSBTAP00000005088/1-508 Len: 560 Check: 5533 Weight: 1.00 Name: BACU002659/1-436 Len: 560 Check: 8323 Weight: 1.00 Name: ENSTTRP00000009184/1-423 Len: 560 Check: 5833 Weight: 1.00 // 1 50 bmy_15108T0/1-496 -----MRMRE NPAKH----- ---------R TKLWVAISSR FSTVPAIPLX ENSP00000358414/1-508 -----MQRLL TPVKRILQLT RAVQETSLTP ARLLPVAHQR FSTASAVPLA ENSBTAP00000005088/1-508 -----MQRLL TPVRQVLQVK RVMQEASLLP ARLLPAAHPS FSTVPAVPLA BACU002659/1-436 MPDHSLTIRT VGRPRAVAVD QYLRELSAPV KDPWTPV-AW FSTVPAIPLA ENSTTRP00000009184/1-423 ---------- ---------- ---------- ---------- FSIAPAIPLA 51 100 bmy_15108T0/1-496 KRDTWPKDVG ILALEVSFPA QYVDQTDLEK FNDVEAGKYT VGMSQTQMGF ENSP00000358414/1-508 KTDTWPKDVG ILALEVYFPA QYVDQTDLEK YNNVEAGKYT VGLGQTRMGF ENSBTAP00000005088/1-508 KTDTWPKDVG ILAMEVYFPA QYVDQTELEK FNKVEAGRYT VGLGQTQMGF BACU002659/1-436 KRDAWPKDVG ILALEVHFPA QYVDQTDMEK FNDVEAGKYT VGMGQTQMGF ENSTTRP00000009184/1-423 KRDAWPKDVG ILALEVYFPA HYVDQTDMEK FNNVEAGKYT VGMGHTQMGF 101 150 bmy_15108T0/1-496 CSVQEDINSL HLTVVQQLME CTQLPWESVG RLEVGTETII DKSKAVKTVF ENSP00000358414/1-508 CSVQEDINSL CLTVVQRLME RIQLPWDSVG RLEVGTETII DKSKAVKTVL ENSBTAP00000005088/1-508 CSVQEDVNSL CLTVVQQLME RTQLPWDSVG RLEVGTETII DKSKAVKTVL BACU002659/1-436 CSVQEGINSL CLTVVQQLME LTQLPWESVG RLEVGTETII DNSKAVKTVL ENSTTRP00000009184/1-423 CSVQEGINSL CLTVVQQLME HTQLPWESVG RLEVGTETII DKSK------ 151 200 bmy_15108T0/1-496 MELFQDSGNT DIEGIDTTSA CYGDTASLYS VLATGCSPAP GMV------- ENSP00000358414/1-508 MELFQDSGNT DIEGIDTTNA CYGGTASLFN --AANWMESS SWD------G ENSBTAP00000005088/1-508 MELFQDSGNT DIEGIDTTNA CYGGTASLFN --AANWMESS SWD------G BACU002659/1-436 MELFQDSGNT DIEGIDTTSA CYGDTASLYS VFPTGWSPAP GMVRAARGLS ENSTTRP00000009184/1-423 ---------- ---------- ---------- ---------- ---------G 201 250 bmy_15108T0/1-496 --------HI AVHSSGNIHP TGRAGAVAML VGPKAPLALD RGLRATHMEN ENSP00000358414/1-508 RYAMVVCGDI AVYPSGNARP TGGAGAVAML IGPKAPLALE RGLRGTHMEN ENSBTAP00000005088/1-508 RYALVVCGDI AVYPSGNARP TGGAGAVAML VGPEAPLVLE RGLRGTHMEN BACU002659/1-436 HYALVVCGDI AVYSSGNIHP TGRAGAVAML VGPKAPLGLE R--------- ENSTTRP00000009184/1-423 HYALVVCGDI AVYSSGNIHP TGRAGAVAML VGPKGPLALE RGLRATHMEN 251 300 bmy_15108T0/1-496 VYDFYKADMT SECPQLDGKL SIQRYLRALD RCYVLYCQKI RNQWEQAGID ENSP00000358414/1-508 VYDFYKPNLA SEYPIVDGKL SIQCYLRALD RCYTSYRKKI QNQWKQAGSD ENSBTAP00000005088/1-508 VYDFYKPDVT SEYPLVDGKL SIQCYLRALD KCYAFYRQKI EKQWKQAGID BACU002659/1-436 -------DMT SECPRLDGKL SIQRYLRALD RCYMLYSQKI QNQWEQAGID ENSTTRP00000009184/1-423 VYDFYKADMT SECPQLDGKL SIQRYLRALD QCYMYH--KI QNEWEQAGID 301 350 bmy_15108T0/1-496 RHFTLDDLQF MIFHTPFCKM VQKSLAHLMF NDFLLASGNT QTGLNKRLEA ENSP00000358414/1-508 RPFTLDDLQY MIFHTPFCKM VQKSLARLMF NDFLSASSDT QTSLYKGLEA ENSBTAP00000005088/1-508 RPFTLDDVQY MIFHTPFCKL VQKSLARLMF NDFLLASGDT QTGIYKGLEA BACU002659/1-436 RHFTLDDLQF MIFHTPFCKM VQKSLAHLMF NDILLASGNT QTGLYKRLDA ENSTTRP00000009184/1-423 RHFT-PDLQF VIFHTPFCKR VQKSLAHLMF NDFVLASGNT QTGLYKRLEA 351 400 bmy_15108T0/1-496 FSLLSSSCYT FPLAAFLPSC GFSPGLFLWL PHRGLKLEDT YTNKDVEKAF ENSP00000358414/1-508 F--------- ---------- ---------- --GGLKLEDT YTNKDLDKAL ENSBTAP00000005088/1-508 F--------- ---------- ---------- --RGLKLEDT YTNKDVDKAF BACU002659/1-436 F--------- ---------- ---------- ---------- ---------- ENSTTRP00000009184/1-423 F--------- ---------- ---------- --RGLKLEDT YTDKDVEKAF 401 450 bmy_15108T0/1-496 QKAXLDMFNK KSKASLYLST HRGICTLHPW MDAWPHFCPR LGWLQDWCLL ENSP00000358414/1-508 LKASQDMFDK KTKASLYLST HNG----NMY TSSL-YGCLA SLLSHHSAQE ENSBTAP00000005088/1-508 LKASLNMFNK KTKNSLYLST YNG----NMY TSSL-YGCLA SLLAHHSAQD BACU002659/1-436 ---------- ---------- ---------- ---------- ----SHSAQD ENSTTRP00000009184/1-423 QKASLDMFNK KRKASLYLST HNG----NMY TSSLGEGCLA SLLFHHSAQD 451 500 bmy_15108T0/1-496 LWLWLSGKFL FISGVPGCFS RLP------- ----LPLEKL VSSTSDLPKC ENSP00000358414/1-508 LAGSRIGAFS YGSGLAASFF SFRVSQDAAP G---SPLDKL VSSTSDLPKR ENSBTAP00000005088/1-508 LAGSRIGAFS YGSGLAASFF SFRVSQDASP G---SPLEKL VSSTSDLQKR BACU002659/1-436 LAGSRIGAFS YGSGLAESFF SFRVSQDASP GELPPPLEKL VSSTSDLPKC ENSTTRP00000009184/1-423 LAGSRTGAFS YGSGLAESFF SFRVPQDASP V---SPPEKL VSSTSDLPKC 501 550 bmy_15108T0/1-496 LTSWKRMSPE KFTEIMDQRE QFYHKVNFSP LGDQNSLFPG T--------- ENSP00000358414/1-508 LASRKCVSPE EFTEIMNQRE QFYHKVNFSP PGDTNSLFPG TWYLERVDEQ ENSBTAP00000005088/1-508 LASRKRVSPE EFTEIMNQRE QYYHKMNFSP PGDKNSLFPG TWYLERVDEL BACU002659/1-436 LASRKRMSPE KFTEIMDQRE QFYHKAD--- -GD----FYG S-SLS----- ENSTTRP00000009184/1-423 LTSRKHMSPE KFTEIMDQRE QFYHKVNFSP LGDKNSLFLG T-YLERVDEL 551 600 bmy_15108T0/1-496 ---------- ENSP00000358414/1-508 HRRKYARRPV ENSBTAP00000005088/1-508 YRRKYARRPV BACU002659/1-436 FNPPPPRQSI ENSTTRP00000009184/1-423 YHRKYARRPV