KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:38 2014 Check: 00 .. Name: ENSP00000328547/1-853 Len: 866 Check: 5508 Weight: 1.00 Name: ENSBTAP00000005094/1-842 Len: 866 Check: 2233 Weight: 1.00 Name: ENSTTRP00000014038/1-856 Len: 866 Check: 1605 Weight: 1.00 Name: bmy_00538T0/1-800 Len: 866 Check: 9327 Weight: 1.00 Name: BACU015572/1-690 Len: 866 Check: 8063 Weight: 1.00 // 1 50 ENSP00000328547/1-853 MKGDTRHLNG EEDAGGREDS ILVNGACSDQ SSD-----SP PILEAIRTPE ENSBTAP00000005094/1-842 MKGDTRQLNG EEDASRREDS VLTNGGCSDQ SSDSKDAPSP PILEAISTPE ENSTTRP00000014038/1-856 MKGDTRQFTG EEDASRREDS ILTNGGCSDQ SSDSKDAPSP PILEAISSPD bmy_00538T0/1-800 MKGDTRQLNG EEDTSRREDS ILTNGGCSDQ SSDSKDAPSP PILEAISTPE BACU015572/1-690 MPKLFR---- -ETRTRPESP AVRTRNNNST SSRERHRPSP ---------- 51 100 ENSP00000328547/1-853 I------RGR RSSSRLSKRE VSSLLSYTQD LTGDGD--GE DGDGSDTPVM ENSBTAP00000005094/1-842 IRGGRGGRGR RSSSRLSKRE VSSLLSYTQD LTGDGDGEGE DGDGSDTPVM ENSTTRP00000014038/1-856 I------RGR RSSSRLSKRE VSSLLSYTQD LTGDGDGEGE DGDGSDTPVM bmy_00538T0/1-800 IRGGRGGRGR RSSSRLSKRE VSSLLSYTQD LTGDGDGEGE DGDGSDTPVM BACU015572/1-690 ----RSTRGR QGRNHVDESP VE-------- ---------- ---------- 101 150 ENSP00000328547/1-853 PKLFRETRTR SESPAVRTRN NNSVSSRERH RPSPRSTRGR QGRNHVDESP ENSBTAP00000005094/1-842 PKLFRETRTR SESPAVRTRN NSSTSTRERH RPSLRSTRGR QGRNHVDESP ENSTTRP00000014038/1-856 PKLFRETRTR PESPAVRTRN NNSTSSRERH RPSPRSTRGR QGRNHVEESP bmy_00538T0/1-800 PKLFRETRTR PESPA----- ---------- ---------- ---------- BACU015572/1-690 ---FSATR-- ---------- ---------- ---------- ---------- 151 200 ENSP00000328547/1-853 VEFPATRSLR RRATASAGTP WPSPPSSYLT IDLTDDTEDT HGTPQSSSTP ENSBTAP00000005094/1-842 VAFSTTRSLR RRTGSSAGTP WPSPASPYLT IDLTDEDV-- --VPQSSSTP ENSTTRP00000014038/1-856 VEFSATRSLR RRTGSSAGAP WLSPASPYLT IDLTDDEV-- --VPQSSSTP bmy_00538T0/1-800 -------SLR RRTGSSAGTP WLSPASPYLT IDLTDDDV-- --VPQSSSTP BACU015572/1-690 -------SLR RRTGSSAGTP WLSPASPYLT IDLTDDDV-- --VPQSSSTP 201 250 ENSP00000328547/1-853 YARLAQDSQQ GGMESPQVEA DSGDGDSSEY QDGKEFGIGD LVWGKIKGFS ENSBTAP00000005094/1-842 YARLGQDSQQ ESMESSQLDA DGRDADSTEY QDGKEFGIGD LVWGKIKGFS ENSTTRP00000014038/1-856 YARLAQDSQQ ESMESPQVDA EGRDADSTEY QDGKEFGIGD LVWGKIKGFS bmy_00538T0/1-800 YARQAQDSQQ ESMESPQVDA EGRDADSTEY QDGKEFGIGD LVWGKIKGFS BACU015572/1-690 YARLAQDSQQ ESVESLQVDA EGRDADSTEY Q--------- ---------- 251 300 ENSP00000328547/1-853 WWPAMVVSWK ATSKRQAMSG MRWVQWFGDG KFSEVSADKL VALGLFSQHF ENSBTAP00000005094/1-842 WWPAMVVSWK ATSKRQAMSG MRWVQWFGDG KFSEIPADKL VALGLFSQHF ENSTTRP00000014038/1-856 WWPAMVVSWK ATSKRQAMSG MRWVQWFGDG KFSEIPADKL VALGLFSQHF bmy_00538T0/1-800 WWPAMVVSWK ATSKRQAMSG MRWVQWFGDG KFSEIPADKL VALGLFSHHF BACU015572/1-690 ---------- ---------- ---------- ----IPADKL VALGLFSHHF 301 350 ENSP00000328547/1-853 NLATFNKLVS YRKAMYHALE KARVRAGKTF PSSPGDSLED QLKPMLEWAH ENSBTAP00000005094/1-842 NLATFNKLVS YRKAMYHALE KARIRAGKMF PSSPGDSLED QLKPMLEWAH ENSTTRP00000014038/1-856 NLATFNKLVS YRKAMYHALE KARMRAGKTF PSSPGDSLED QLKPMLEWAH bmy_00538T0/1-800 NLATFNKLVS YRKAMYHALE KARIRAGKTF PSSPGDSLED QLKPMLEWAH BACU015572/1-690 NLATFNKLVS YRKAMYHALE KARIRAGKTF PSSPGDSLED QLKPMLEWAH 351 400 ENSP00000328547/1-853 GGFKPTGIEG LKPNNTQPVV NKSKVRRAGS RKLESRKYEN KTRRRTADDS ENSBTAP00000005094/1-842 GGFKPTGVEG LKPNNKQP-- ---------- --------EN KTRRRTADDS ENSTTRP00000014038/1-856 GGFKPTGVEG LKPNNRQPVV NKSKVRRAGS RNLEAKKHEN KTRRRTADDS bmy_00538T0/1-800 GGFKPTGIEG LKPNNRQP-- ---------- --------EN KTRRRTAEDS BACU015572/1-690 GGFKPTGIEG LKPNNRQP-- ---------- --------EN KTRRRTAEDS 401 450 ENSP00000328547/1-853 ATSDYCPAPK RLKTNCYNNG KDRGDEDQSR EQMASDVANN KSSLEDGCLS ENSBTAP00000005094/1-842 ATSDYCPPPK RLKTNCYNNG KDRGEEDQSR EQMASDVASN KGNLEDSCLS ENSTTRP00000014038/1-856 ATSDYCPPAK RLKTNCYNNG KDRGEEDQSR EQMASDVSNN KSNLEDSCLS bmy_00538T0/1-800 TTSDYCPPAK RLKTNCYNNG KDRGEEDQSR EQMASDVSNN KSNLEDSCLS BACU015572/1-690 TTSDYCPPAK RLKTNCYNNG KDRGEEDQSR EQMASDVSNN KSNLEDSCLS 451 500 ENSP00000328547/1-853 CGRKNPVSFH PLFEGGLCQT CRDRFLELFY MYDDDGYQSY CTVCCEGREL ENSBTAP00000005094/1-842 CGRKNPVSFH PLFEGGLCQT CRDRFLELFY MYDDDGYQSY CTVCCEGREL ENSTTRP00000014038/1-856 CGRKNPVSFH PLFEGGLCQT CRDRFLELFY MYDDDGYQSY CTVCCEGREL bmy_00538T0/1-800 CGRKNPVSFH PLFEGGLCQT CRDRFLELFY MYDDDGYQSY CTVCCEGREL BACU015572/1-690 CGRKNPVSFH PLFEGGLCQT CRDRFLELFY MYDDDGYQSY CTVCCEGREL 501 550 ENSP00000328547/1-853 LLCSNTSCCR CFCVECLEVL VGTGTAAEAK LQEPWSCYMC LPQRCHGVLR ENSBTAP00000005094/1-842 LLCSNTSCCR CFCVECLEVL VGAGTAAEAK LQEPWSCYMC LPQRCHGILR ENSTTRP00000014038/1-856 LLCSNTSCCR CFCVECLEVL VGPGTAADAK LQEPWSCYMC LPQRCHGILR bmy_00538T0/1-800 LLCSNTSCCR CFCVECLEVL VGPGTAADAK LQEPWSCYMC LPQRCHGVLR BACU015572/1-690 LLCSNTSCCR CFCVECLEVL VGPGTAADAK LQEPWSCYMC LPQRCHGVLR 551 600 ENSP00000328547/1-853 RRKDWNVRLQ AFFTSDTGLE YEAPKLYPAI PAARRRPIRV LSLFDGIATG ENSBTAP00000005094/1-842 RRKDWSVRLQ AFFTSDPGLE YEAPKLYPAI PANRRRPIRV LSLFDGIATG ENSTTRP00000014038/1-856 RRKDWSVRLQ AFFTSDPGLD YEAPKLYPAI PANRRRPIRV LSLFDGIATG bmy_00538T0/1-800 RRKDWSVRLQ AFFTSDPGLD YEAPKLYPAI PANRRRPIRV LSLFDGIATG BACU015572/1-690 RRKDWSVRLQ AFFTSDPGLD YEAPKLYPAI PANRRRPIRV LSLFDGIATG 601 650 ENSP00000328547/1-853 YLVLKELGIK VGKYVASEVC EESIAVGTVK HEGNIKYVND VRNITKKNIE ENSBTAP00000005094/1-842 YLVLKELGIK VEKYVASEVC EESIAVGTVK HEGNIKYVND VRNITKKNIE ENSTTRP00000014038/1-856 YLVLKELGIK VEKYVASEVC EESIAVGTVK HEGNIKYVND VRNITKKNIE bmy_00538T0/1-800 YLVLKELGIK VEKYVASEVC EESIAVGTVK HEGNIKYVND VRNITKKNIE BACU015572/1-690 YLVLKELGIK VEKYVASEVC EESIAVGTVK HEGNIKYVND VRNITKKNIE 651 700 ENSP00000328547/1-853 EWGPFDLVIG GSPCNDLSNV NPARKGLYEG TGRLFFEFYH LLNYSRPKEG ENSBTAP00000005094/1-842 EWGPFDLVIG GSPCNDLSNV NPARKGLYEG TGRLFFEFYH LLNYTRPKEG ENSTTRP00000014038/1-856 EWGPFDLVIG GSPCNDLSNV NPARKGLYEG TGRLFFEFYH LLNYTRPKEG bmy_00538T0/1-800 EWGPFDLVIG GSPCNDLSNV NPARKGLYEG TGRLFFEFYH LLNYTRPKEG BACU015572/1-690 EWGPFDLVIG GSPCNDLSNV NPARKGLYEG TGRLFFEFYH LLNYTRPKEG 701 750 ENSP00000328547/1-853 DDRPFFWMFE NVVAMKVGDK RDISRFLECN PVMIDAIKVS AAHRARYFWG ENSBTAP00000005094/1-842 EDRPFFWMFE NVMAMKVGDK RDISRFMACN PVMIDAIKVS AAHRARYFWG ENSTTRP00000014038/1-856 EDRPFFWMFE NVVAMKVGDK RDISRFLECN PVMIDAIKVS AAHRARYFWG bmy_00538T0/1-800 EDRPFFWMFE NVVAMKVGDK RDISRFLECN PVMIDAIKVS AAHRARYFWG BACU015572/1-690 EDRPFFWMFE NVVAMKVGDK RDISRFLECN PVMIDAIKVS AAHRARYFWG 751 800 ENSP00000328547/1-853 NLPGMNRPVI ASKNDKLELQ DCLEYNRIAK LKKVQTITTK SNSIKQGKNQ ENSBTAP00000005094/1-842 NLPGMNRPVI ASKNDKLELQ DCLEFNRTAK LKKVQTITTK SNSIRQGKNQ ENSTTRP00000014038/1-856 NLPGMNRPVI ASKNDKLELQ DCLEFNRTAK LKKVQTITTK SNSIRQGKNQ bmy_00538T0/1-800 NLPGMNRPVI ASKNDKLELQ DCLEFNRTAK LKKVQTITTK SNSIRQGKNQ BACU015572/1-690 NLPGMNRPVI ASKNDKLELQ DCLEFNRTAK LKKVQTITTK SNSIRQGKNQ 801 850 ENSP00000328547/1-853 LFPVVMNGKE DVLWCTELER IFGFPVHYTD VSNMGRGARQ KLLGRSWSVP ENSBTAP00000005094/1-842 LFPVVMNGKE DVLWCTELER IFGFPVHYTD VSNMGRVARQ KLLGRSWSVP ENSTTRP00000014038/1-856 LFPVVMNGKE DVLWCTELER IFGFPVHYTD VSNMGRVARQ KLLGRSWSVP bmy_00538T0/1-800 LFPVVMNGKE DVLWCTELER IFGFPVHYTD VSNMGRVARQ KLLGRSWSVP BACU015572/1-690 LFPVVMNGKE DVLWCTELER IFGFPVHYTD VSNMGRVARQ KLLGRSWSVP 851 900 ENSP00000328547/1-853 VIRHLFAPLK DYFACE ENSBTAP00000005094/1-842 VIRHLFAPLK DYFACE ENSTTRP00000014038/1-856 VIRHLFAPLK DYFACE bmy_00538T0/1-800 VIRHLFAPLK DYFACE BACU015572/1-690 VIRHLFAPLK DYFACE