KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:42 2014 Check: 00 .. Name: BACU011698/1-558 Len: 573 Check: 4463 Weight: 1.00 Name: ENSP00000341805/1-498 Len: 573 Check: 1068 Weight: 1.00 Name: ENSBTAP00000005130/1-410 Len: 573 Check: 756 Weight: 1.00 Name: ENSTTRP00000010471/1-409 Len: 573 Check: 2998 Weight: 1.00 Name: bmy_15943T0/1-422 Len: 573 Check: 3648 Weight: 1.00 // 1 50 BACU011698/1-558 MDFQALCQSC PIAPGFLKPK FHFTIKKVIS LSLSLSPSFQ YAQILRERLR ENSP00000341805/1-498 ---------- -------MAA AAGPGAALSP RPCDSDPATP GAQSPKDDNE ENSBTAP00000005130/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010471/1-409 ---------- ---------- ---------- ---------- ---------- bmy_15943T0/1-422 ---------- ---------- ---------- ---------- ---------- 51 100 BACU011698/1-558 ESIHDVQYVE PPFDDSVADT GKEWKSALAK LKFANSYRVE PLKKFQAHSV ENSP00000341805/1-498 DNSNDGTQPS KRRRMGSGDS SRSCETSSQD LGFSY-YPAE NLIEYKWPPD ENSBTAP00000005130/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010471/1-409 ---------- ---------- ---------- ---------- ---------- bmy_15943T0/1-422 ---------- ----MGSGDS SRSCDTSSQD LGFSY-YPAE NLIEYKWPPD 101 150 BACU011698/1-558 ETKVQQILKE NLKDVKYDDK VFSHLSLELA DRILLAVKEF GFHRYKFIIK ENSP00000341805/1-498 ETGEYYMLQE QVSE------ ---------- ---YLGVTSF K-RKY----- ENSBTAP00000005130/1-410 ------MLQE QVSE------ ---------- ---YLGVTSF K-RKY----- ENSTTRP00000010471/1-409 ------MLQE QVSE------ ---------- ---YLGVTSF K-RKY----- bmy_15943T0/1-422 ETGEYYMLQE QVSE------ ---------- ---YLGVTSF K-RKY----- 151 200 BACU011698/1-558 VLFIQKTGQA INDDNEDNSN DGTQPSKRRR MGSGDSSRSC DTSSQDLGYC ENSP00000341805/1-498 ---------- ---------- ----PDLERR ----DLSHKE KLYLRELN-- ENSBTAP00000005130/1-410 ---------- ---------- ----PDLERR ----DLSHKE KLYLRELN-- ENSTTRP00000010471/1-409 ---------- ---------- ----PDLERR ----DLSHKE KLYLRELN-- bmy_15943T0/1-422 ---------- ---------- ----PDLERR ----DLSHKE KLYLRELN-- 201 250 BACU011698/1-558 HFLLNNVYC- -GLTALRSDE VIDLMIKEYP AKHAEYSVIL QEKERQRITD ENSP00000341805/1-498 --VITETQCT LGLTALRSDE VIDLMIKEYP AKHAEYSVIL QEKERQRITD ENSBTAP00000005130/1-410 --VITETQCT LGLTALRSDE VIDLMIKEYP AKHAEYSVIL QEKERQRITD ENSTTRP00000010471/1-409 --VITETQCT LGLTALRSDE VIDLMIKEYP AKHAEYSVIL QEKERQRITD bmy_15943T0/1-422 --VITETQCT LGLTALRSDE VIDLMIKEYP AKHAEYSVIL QEKERQRITD 251 300 BACU011698/1-558 HYKEYSQLQQ QNTQKVEASK VPEYIKKAAK KAAEFNSNLN RERMEERRAY ENSP00000341805/1-498 HYKEYSQMQQ QNTQKVEASK VPEYIKKAAK KAAEFNSNLN RERMEERRAY ENSBTAP00000005130/1-410 HYKEYSQMQQ QNTQKVEASK VPEYIKKAAK KAAEFNSNLN RERMEERRAY ENSTTRP00000010471/1-409 HYKEYSQMQQ QNTQKVEASK VPEYIKKAAK KAAEFNSNLN RERMEERRAY bmy_15943T0/1-422 HYKEYSQLQQ QNTQKVEASK VPEYIKKAAK KAAEFNSNLN RERMEERRAY 301 350 BACU011698/1-558 FDLQTHVIQV PQGKYKVLPT ERTKVSSYPV ALIPGQFQEY YKRYSPDELR ENSP00000341805/1-498 FDLQTHVIQV PQGKYKVLPT ERTKVSSYPV ALIPGQFQEY YKRYSPDELR ENSBTAP00000005130/1-410 FDLQTHVIQV PQGKYKVLPT ERTKVSSYPV ALIPGQFQEY YKRYSPDELR ENSTTRP00000010471/1-409 FDLQTHVIQV PQGKYKVLPT ERTKVSSYPV ALIPGQFQEY YKRYSPDELR bmy_15943T0/1-422 FDLQTHVIQV PQGKYKVLPT ERTKVSSYPV ALIPGQFQEY YK-------- 351 400 BACU011698/1-558 YLPLNTALYE PPLDPELPAL DSDGDSDDAE DGRGDEKRKN KGTSDSSSGN ENSP00000341805/1-498 YLPLNTALYE PPLDPELPAL DSDGDSDDGE DGRGDEKRKN KGTSDSSSGN ENSBTAP00000005130/1-410 YLPLNTALYE PPLDPELPAL ESDGDSDDAE DGRGDEKGKS KGTSDSSSGN ENSTTRP00000010471/1-409 YLPLNTALYE PPLDPELPAL DSDGDSDDAE DGRGDEKRKN KGTSDSSSGN bmy_15943T0/1-422 ---------- ---------- -SDGDSDDAE DGRGDEKRKN KGTSDSSSGN 401 450 BACU011698/1-558 VSEGEGLPEG QDEPLQGRQR SRDKAAPPRR DASKRSVLSK PVPGYKPKVI ENSP00000341805/1-498 VSEGESPPDS QEDSFQGRQK SKDKAATPRK DGPKRSVLSK SVPGYKPKVI ENSBTAP00000005130/1-410 VSEGEGLPEG QEEPLPGRQR PRDKAAAPRK DAPKRSALSK AVPGHKPKVI ENSTTRP00000010471/1-409 VSEGEGLPEG QEEPLQGRQR SRDKAAPPRK DASKRSVLSK SVPGYKPKVI bmy_15943T0/1-422 VSEGEGLPEG QEEPLQGRQR SRDKAAPPRR DASKRSVLSK SVPGYKPKVI 451 500 BACU011698/1-558 PSALCGICLK GKESNKKGKA ESLVHCSQCG NSGHPSCLDM TMELVSMIKT ENSP00000341805/1-498 PNAICGICLK GKESNKKGKA ESLIHCSQCE NSGHPSCLDM TMELVSMIKT ENSBTAP00000005130/1-410 PNALCGICLK GKESSRRGKA EPLVHCSQCD NSGHPSCLDM TMELVSMIKT ENSTTRP00000010471/1-409 PNALCGICLK GKESNKKGKA ESLIHCSQCD NSGHPSCLDM TMELVSMIKT bmy_15943T0/1-422 PNALCGICLK GKESNKKGKA ESLIHCSQCD NSGHPSCLDM TMELVSMIKT 501 550 BACU011698/1-558 YPWQCMECKT CIICGQPHHE EEMMFCDVCD RGYHTFCVGL GAIPSDKL-- ENSP00000341805/1-498 YPWQCMECKT CIICGQPHHE EEMMFCDMCD RGYHTFCVGL GAIPSGRWIC ENSBTAP00000005130/1-410 YPWQCMECKT CIICGQPHHE EEMMFCDVCD RGYHTFCVGL GAIPSGRWIC ENSTTRP00000010471/1-409 YPWQCMECKT CIICGQPHHE EEMMFCDVCD RGYHTFCVGL GAIPSGRWIC bmy_15943T0/1-422 YPWQCMECKT CIICGQPHHE EEMMFCDVCD RGYHTFCVGL GAIPSGRWIC 551 600 BACU011698/1-558 ---TKGQVTA YKFWK----- --- ENSP00000341805/1-498 DCCQRAPPTP RKVGRRGKNS KEG ENSBTAP00000005130/1-410 DCCQRAPPTP RKVGRRGKNS KEG ENSTTRP00000010471/1-409 ACCQQAPPTP RKVGRRGKNS KE- bmy_15943T0/1-422 DCCQQAPPTP RKVGRRGKNS KEG