KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:44 2014 Check: 00 .. Name: BACU016657/1-677 Len: 743 Check: 3094 Weight: 1.00 Name: bmy_02632T0/1-387 Len: 743 Check: 231 Weight: 1.00 Name: ENSTTRP00000004119/1-384 Len: 743 Check: 9183 Weight: 1.00 Name: ENSP00000270061/1-385 Len: 743 Check: 654 Weight: 1.00 Name: ENSBTAP00000005153/1-362 Len: 743 Check: 2387 Weight: 1.00 // 1 50 BACU016657/1-677 MYAKGGKGSA VPSDSQAREK LALYVYEYLL HVGAQKSAQT FLSEIRWEKN bmy_02632T0/1-387 MYAKGGKGSA VPSDSQAREK LALYVYEYLL HVGAQKSAQT FLSEIRWEKN ENSTTRP00000004119/1-384 MYAKGGKGSA VPSDSQAREK LALYVYEYLL HVGAQKSAQT FLSEIRWEKN ENSP00000270061/1-385 MYAKGGKGSA VPSDSQAREK LALYVYEYLL HIGAQKSAQT FLSEIRWEKN ENSBTAP00000005153/1-362 MYAKGGKGSA VPSDSQAREK LALYVYEYLL HVGAQKSAQT FLSEIRWEKN 51 100 BACU016657/1-677 ITLGEPPGFL HS-WWCV--- ---------- ---------- -----FWDLY bmy_02632T0/1-387 ITLGEPPGFL HSWWWCAQGW CGWDMGGAGG GRVGKPSSPP AAHSVFWDLY ENSTTRP00000004119/1-384 ITLGEPPGFL HS-WWCV--- ---------- ---------- -----FWDLY ENSP00000270061/1-385 ITLGEPPGFL HS-WWCV--- ---------- ---------- -----FWDLY ENSBTAP00000005153/1-362 ITLGEPPGFL HS-WWCV--- ---------- ---------- -----FWDLY 101 150 BACU016657/1-677 CAAPDRREAC EHSSEAKAFQ DYSAAAAPSP VMGSMAPNDA MASGPMAPGF bmy_02632T0/1-387 CAAPDRREAC EHSSEAKAFQ DYSAAAAPSP VMGSMAPNDA MASGPMAPGF ENSTTRP00000004119/1-384 CAAPDRREAC EHSSEAKAFQ DYSAAAAPSP VMGSMAPNDA MASGPMATGF ENSP00000270061/1-385 CAAPDRREAC EHSGEAKAFQ DYSAAAAPSP VMGSMAPGDT MAAGSMAAGF ENSBTAP00000005153/1-362 CAAPDRREAC EHSSEAKAFQ DYSAAAAPSP VMGSMAPSDA MASGPMAPSF 151 200 BACU016657/1-677 F--------- ---------- ---QPFMSPR FPGGPRPTLR MPSQPPVGLP bmy_02632T0/1-387 F--------- ---------- ---QPFMSPR FPGGPRPTLR MPSQPPVGLP ENSTTRP00000004119/1-384 FQGPPGSQPL PDNPNAPMMG PQVPPFMSPR FPGGPRPTLR MPSQPPVGLP ENSP00000270061/1-385 FQGPPGSQPS PHNPNAPMMG PHGQPFMSPR FPGGPRPTLR MPSQPPAGLP ENSBTAP00000005153/1-362 F--------- ---------- ---QPFMSPR FPGGPRPTLR MPSQPPTPPP 201 250 BACU016657/1-677 GSQPLLPGAM DPSPRAQGHS SM-GPMQRVT PPRGMTSVGP QSY-GSGMRP bmy_02632T0/1-387 GSQSLLPGAM DPSPRAQGHS SM-GPMQRVT PPRGMTSVGP QSY-GSGMRP ENSTTRP00000004119/1-384 GSQPLLPGAM DPSPRAQGHS SM-GPMQRVT PPRGMTSVGP QSY-GSGMRP ENSP00000270061/1-385 GSQPLLPGAM EPSPRAQGHP SMGGPMQRVT PPRGMASVGP QSY-GGGMRP ENSBTAP00000005153/1-362 APAQCVS-TL GNSPDPPGHS SM-GPMQRVT PPRGMTSVGP QSYGGGGMRP 251 300 BACU016657/1-677 PPNSLAGPGL PTMNMGPGVR GPWASPSGNS ---------- --GPPGGGGP bmy_02632T0/1-387 PPNSLAGPGL PTMNMGPGVR GPWASPSGNS ---------- --GPPGGGGP ENSTTRP00000004119/1-384 PPNSLAGPGL PTMNMGPGVR GPWASPSGNS IPYSSSSPGS YTGPPGGGGP ENSP00000270061/1-385 PPNSLAGPGL PAMNMGPGVR GPWASPSGNS IPYSSSSPGS YTGPPGGGGP ENSBTAP00000005153/1-362 PPNSLAGPGL PTMNMGPGVR GPWASPSGNS IPYSSSSPGS YSGPPGGGGP 301 350 BACU016657/1-677 PGPSIMPSPG DSTNSSENMY TIMNPIGPGA GRTNVSWGLW GSGWGRRGGG bmy_02632T0/1-387 PGTPIMPSPG DSTNSSENMY TIMNPIGPGA GRAN------ ---------- ENSTTRP00000004119/1-384 PGTPIMPSPG DSTNSSENIY TIMNPIGPGA GRAN------ ---------- ENSP00000270061/1-385 PGTPIMPSPG DSTNSSENMY TIMNPIGQGA GRAN------ ---------- ENSBTAP00000005153/1-362 PGTPIMPSPG DSTNSSENMY TIMNPIGPGA GRAN------ ---------- 351 400 BACU016657/1-677 SRPKLLLCLQ FSLGPGPEAP MAXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02632T0/1-387 ---------- FPLGPGPEAP MA-------- ---------- ---------- ENSTTRP00000004119/1-384 ---------- FPLGPGPEAP MA-------- ---------- ---------- ENSP00000270061/1-385 ---------- FPLGPGPEGP MA-------- ---------- ---------- ENSBTAP00000005153/1-362 ---------- FPLGPGPEGP MA-------- ---------- ---------- 401 450 BACU016657/1-677 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02632T0/1-387 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004119/1-384 ---------- ---------- ---------- ---------- ---------- ENSP00000270061/1-385 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005153/1-362 ---------- ---------- ---------- ---------- ---------- 451 500 BACU016657/1-677 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02632T0/1-387 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004119/1-384 ---------- ---------- ---------- ---------- ---------- ENSP00000270061/1-385 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005153/1-362 ---------- ---------- ---------- ---------- ---------- 501 550 BACU016657/1-677 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02632T0/1-387 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004119/1-384 ---------- ---------- ---------- ---------- ---------- ENSP00000270061/1-385 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005153/1-362 ---------- ---------- ---------- ---------- ---------- 551 600 BACU016657/1-677 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02632T0/1-387 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004119/1-384 ---------- ---------- ---------- ---------- ---------- ENSP00000270061/1-385 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005153/1-362 ---------- ---------- ---------- ---------- ---------- 601 650 BACU016657/1-677 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02632T0/1-387 ---------- ---------- ---------- ---------A MSAMEPHHVN ENSTTRP00000004119/1-384 ---------- ---------- ---------- ---------A MSAMEPHHVN ENSP00000270061/1-385 ---------- ---------- ---------- ---------A MSAMEPHHVN ENSBTAP00000005153/1-362 ---------- ---------- ---------- ---------A MSAMEPHHVN 651 700 BACU016657/1-677 XXXXXXXXGG PEQDRDRGGP GGGAAAASFP SSRLPPPEAR PIAPLRPHPT bmy_02632T0/1-387 GSLGEWAESR DTHPHTRLRP AASRASCAPW RP-------- ------PSAS ENSTTRP00000004119/1-384 GSLG----SG DLDGLPKSSP GAXXXXXXXX XX-------- ------XXXX ENSP00000270061/1-385 GSLG----SG DMDGLPKSSP GAVAGLSNAP GT-------- ------PRDD ENSBTAP00000005153/1-362 GSLG----SG DLDGLPKSSP GAVAGLSNTP GT-------- ------PRDD 701 750 BACU016657/1-677 PTLGPAAQGG LLTHRHLVPF HPTSTLPCPP FPSGAGPSLG RN- bmy_02632T0/1-387 PPLCSAGVGG ---------- APRASLGSVT ---GAALRGG SSN ENSTTRP00000004119/1-384 XXXXXXXXXX ---------- XXXXXXXYSP ---GMTMSV- --- ENSP00000270061/1-385 GEMAAAGTFL ---------- HPFPSESYSP ---GMTMSV- --- ENSBTAP00000005153/1-362 GEMAAAGTFL ---------- HPFPSESYSP ---GMTMSV- ---