KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:25:44 2014  Check: 00 ..

 Name: ENSP00000339830/1-160     Len:    169  Check:  1560  Weight:  1.00
 Name: BACU005857/1-132          Len:    169  Check:  7561  Weight:  1.00
 Name: ENSBTAP00000005162/1-167  Len:    169  Check:  2071  Weight:  1.00
 Name: bmy_20698T0/1-167         Len:    169  Check:  3057  Weight:  1.00
 Name: ENSTTRP00000000065/1-159  Len:    169  Check:  7554  Weight:  1.00

//


                          1                                                   50
ENSP00000339830/1-160     -------MAP ALWRACNGLM AAFFALAALV QVNDPDAEVW VVV--YTIPA 
BACU005857/1-132          --------MA KQYKEIIFL- ---------- ---------W DVIPRLTAPG 
ENSBTAP00000005162/1-167  MAPAAGRGAR GLWRACNWLM GAFFALAAFV QVNDPDAELW VVM--YTIPA 
bmy_20698T0/1-167         MAPAAGRGAP GLWRACNWLM GAFFALAAFV QVNDPDAEVW MVV--YTIPA 
ENSTTRP00000000065/1-159  --------AL GLWRACNWLM GAFFALAAFV QVNDPDAEVW MVV--YTVPA 


                          51                                                 100
ENSP00000339830/1-160     VLTLLVGLNP EVTGNVIWKS ISAIHILFCT VWAVGLASYL LHRTQQNILH 
BACU005857/1-132          YLFL------ ---GNFIWKS VSAIHIFFCI VWAVGLAYNL LLHTKQNILH 
ENSBTAP00000005162/1-167  TLTLLVGLNP LVTGNFIWKS VSAIHIFLCV LWAISLAYNL LLHKKQNLLH 
bmy_20698T0/1-167         GLTLLVGLNP LVTGNFIWKS XSAIHIFFCI VWAVGLAYNL LLHTKQNILH 
ENSTTRP00000000065/1-159  GLTLLVGLNP LVTGNFIWKS VSAIHIFFCI VWAVGLAYNL LLHTKQNILH 


                          101                                                150
ENSP00000339830/1-160     EEEGRELSGL VIITAWIILC HSSSKNPVGG RIQLAIAIVI TLFPFISWVY 
BACU005857/1-132          EEEGRELFGL VIITAWLSLC HSASKNPVGG RIQLAVAITV ALFPFISWVY 
ENSBTAP00000005162/1-167  EEEGRELFGL VIITAWLGLC HSSSKAPGGG RIQLAIATTV AFLPFISWVY 
bmy_20698T0/1-167         EEEGRELFGL VIITAWLSLC HSASKNPVGG RIQLAIAITV ALFPFISWVY 
ENSTTRP00000000065/1-159  EEEGRELFGL VIITAWLSLC HSSSKNPVGG RIQLAIAIIV ALFPFISWVY 


                          151                                                200
ENSP00000339830/1-160     IYINKEMRSS WPTHCKTVI 
BACU005857/1-132          IYINKEMRSS WPTHCKTVI 
ENSBTAP00000005162/1-167  IYINKEMRSS WPDHCKTVI 
bmy_20698T0/1-167         VYINKEMRSS WPTHCKTVI 
ENSTTRP00000000065/1-159  VYINKEMRSS WPTHCKTVI