KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:45 2014 Check: 00 .. Name: ENSP00000332062/1-316 Len: 365 Check: 3995 Weight: 1.00 Name: ENSBTAP00000005164/1-316 Len: 365 Check: 7923 Weight: 1.00 Name: ENSTTRP00000012695/1-316 Len: 365 Check: 6398 Weight: 1.00 Name: bmy_04250T0/1-365 Len: 365 Check: 9201 Weight: 1.00 Name: BACU001875/1-262 Len: 365 Check: 8943 Weight: 1.00 // 1 50 ENSP00000332062/1-316 MASPEHPGSP GCMGPITQCT ARTQQEAPAT GPDLPHPGPD GHL------- ENSBTAP00000005164/1-316 MASHKHPGSP GWTGPICQDM AGTTPKASAP RPDLPRPGPE DHL------- ENSTTRP00000012695/1-316 MASPRHARSP GWTTPVAQCM AGTKPKASAP GPDLPRPGPE EHL------- bmy_04250T0/1-365 MASPKHARSP GWTRPISQCM AGTKPKASAP GPDLPRPGPE EHLGGLEVGW BACU001875/1-262 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000332062/1-316 ---------- ---------- ---------- ---------- --DTHSGLSS ENSBTAP00000005164/1-316 ---------- ---------- ---------- ---------- --EAQGSPSS ENSTTRP00000012695/1-316 ---------- ---------- ---------- ---------- --DAHDSQSS bmy_04250T0/1-365 RRGIFTALPD SHGSSQTDPA ISPSPCPQST LTCAILKRVV LPDAHGSQSS BACU001875/1-262 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000332062/1-316 NSSMTTRELQ QYWQNQKCRW KHVKLLFEIA SARIEERKVS KFVVYQIIVI ENSBTAP00000005164/1-316 NSSMTTRELQ EYWRAQKCCW KHVKLLFEIA SARIEERKVS KFVMYQIVVI ENSTTRP00000012695/1-316 NSSMTTRELQ EYWRTQKRCW KHVKLLFEIA SARIEEGTAS KFVMYQIVVI bmy_04250T0/1-365 NSSMTTRELQ EYWRTQKRCW KHVKLLFEIA SARIEEGRVS KFVMYQIVVI BACU001875/1-262 ---MTTRELQ EYWRTQKRCW KHVKLLFEIA SARIEEGRVS KFVMYQIVVI 151 200 ENSP00000332062/1-316 QTGSFDNNKA VLERRYSDFA KLQKALLKTF REEIEDVEFP RKHLTGNFAE ENSBTAP00000005164/1-316 QTGSFDSNKA VLERRYSDFE TLQKKLLKTF REEIEDVVFP KKHLIGNFTE ENSTTRP00000012695/1-316 QTGSFDSDKA ILERRYSDFE MLQKKLLKTF REEIEDVVFP KKHLMGNFTP bmy_04250T0/1-365 QTGSFDSNKA ILERRYSDFE MLQKKLLKTF REEIEDVVFP KKHLMGNFTP BACU001875/1-262 QTGSFDSNKA ILERRYSDFE MLQKKLLKTF REEIEDVVFP KKHLMGNFTP 201 250 ENSP00000332062/1-316 EMICERRRAL QEYLGLLYAI RCVRRSREFL DFLTRPELRE AFGCLRAGQY ENSBTAP00000005164/1-316 EMISERKLAL KEYLSVLYAI RCVRRSREFI DFLTRPELKE AFGCLRAGQY ENSTTRP00000012695/1-316 EMISERKLAL KEYLGLLYAI RCVRRSREFI DFLTRPELKE AFGCLRAGQY bmy_04250T0/1-365 EMISERKLAL KEYLGLLYAI RCVRRSREFI DFLTRPELKE AFGCLRAGQY BACU001875/1-262 EMISERKLAL KEYLSLLYAI RCVRRSREFI DFLTRAELKE AFGCLRAGQY 251 300 ENSP00000332062/1-316 PRALELLLRV LPLQEKLTAH CPAAAVPALC AVLLCHRDLD RPAEAFAAGE ENSBTAP00000005164/1-316 TKALDILMRV VPLQEKLTAH CPVLLVPALC AMLVCHRDLD RPAEAFAVGE ENSTTRP00000012695/1-316 TKALNILVRT VPLQEKLTSH CPVMVVPSLC AMLVCHRDLE CPAEAFAAGE bmy_04250T0/1-365 TKALDILVRT VPLQEKLASH CPVMVVPSLC AMLVCHRDLE RPAEAFAAGE BACU001875/1-262 TKALDILVRT VPLQEKLATH CPAMLVPSLC AMLVCHRDLE RPAEAFAAGE 301 350 ENSP00000332062/1-316 RALQRLQARE GHRYYAPLLD AMVRLAYALG KDFVTLQERL EESQLRRPTP ENSBTAP00000005164/1-316 RALQCLQARE GHRYYAPLLD AMARLAYLLG KDFVSLQKRL EESQLRKPAL ENSTTRP00000012695/1-316 RALQCLQARE GHRYYAPLLD AMARLAYELG KDFVSLQKRL EENQLRKPAS bmy_04250T0/1-365 RALQCLQARE GHRYYAPLLD AMARLAYALG KDFVSLQKRL EENQLRKPAS BACU001875/1-262 RALQCLQARE GHRYYAPLLD AMARLAYALG KDFVSLQKRL EENQLRKPAS 351 400 ENSP00000332062/1-316 RGITLKELTV REYLH ENSBTAP00000005164/1-316 RGFTLKELTV QEYLS ENSTTRP00000012695/1-316 WGFTLKELTV QEYLY bmy_04250T0/1-365 RGFTLKELTV QEYLY BACU001875/1-262 RGFTLKELTV QEYLY