KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:46 2014 Check: 00 .. Name: ENSP00000378611/1-748 Len: 749 Check: 8937 Weight: 1.00 Name: ENSBTAP00000005165/1-654 Len: 749 Check: 7761 Weight: 1.00 Name: ENSTTRP00000015238/1-748 Len: 749 Check: 1065 Weight: 1.00 Name: bmy_17890T0/1-441 Len: 749 Check: 5380 Weight: 1.00 Name: BACU006888/1-653 Len: 749 Check: 5921 Weight: 1.00 // 1 50 ENSP00000378611/1-748 MEENNDSTEN PQQGQGRQNA IKCGWLRKQG GFVKTWHTRW FVLKGDQLYY ENSBTAP00000005165/1-654 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015238/1-748 MEESNDSMEN PQQGQGRNNA MKCGWLRKQG GFVKTWHTRW FVLKGDQLYY bmy_17890T0/1-441 ---------- ---------- ---------- ---------- ---------- BACU006888/1-653 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000378611/1-748 FKDEDETKPL GTIFLPGNKV SEHPCNEENP GKFLFEVVPG GDRDRMTANH ENSBTAP00000005165/1-654 ---------- ---------- ---------- ---------- -----MTANH ENSTTRP00000015238/1-748 FKDEDETKPL GTIFLPGNKV LEHPCNEESP GKFLFEVVPG GDRDRMTANH bmy_17890T0/1-441 ---------- ---------- ---------- ---------- ---------- BACU006888/1-653 ---------- ---------- ---------- ---------- -----MTANH 101 150 ENSP00000378611/1-748 ESYLLMASTQ NDMEDWVKSI RRVIWGPFGG GIFGQKLEDT VRYEKRYGNR ENSBTAP00000005165/1-654 ESYLLMASTQ NDMEDWVKSI RRVIWGPFGG GIFGQKLEDT VRYEKRYGNR ENSTTRP00000015238/1-748 ESYLLMASTQ NDMEDWVKSI RRVIWGPFGG XXXXXXXXXX XXXXXXXXXX bmy_17890T0/1-441 ---------- ---------- ---------- ---------- ---------- BACU006888/1-653 ESYLLMASTQ NDMEDWVKSI RRVIWGPFGG GIFGQKLEDT VRYEKRYGHR 151 200 ENSP00000378611/1-748 LAPMLVEQCV DFIRQRGLKE EGLFRLPGQA NLVKELQDAF DCGEKPSFDS ENSBTAP00000005165/1-654 LAPMLVEQCV DFIRQRGLKE EGLFRLPGQA NLVKELQDAF DCGEKPSFDS ENSTTRP00000015238/1-748 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17890T0/1-441 ---------- ---------- ---------- ---------- ---------- BACU006888/1-653 LAPMLVEQCV DFIRQRGLKE EGLFRLPGQA NLVKELQDAF DCGEKPSFDS 201 250 ENSP00000378611/1-748 NTDVHTVASL LKLYLRELPE PVIPYAKYED FLSCAKLLSK EEEAGVKELA ENSBTAP00000005165/1-654 NTDVHTVASL LKLYLRELPE PVIPYAKYED FLSCAKLLSK EEEAGVKELA ENSTTRP00000015238/1-748 NTDVHTVASL LKLYLRXXXX XXXXXXXXXX XXXXXXXXXX XXXXGVKGLA bmy_17890T0/1-441 ---------- ---------- ---------- ---------- ---------- BACU006888/1-653 NTDVHTVASL LKLYLRELPE PVIPYAKYED FLSCAKLLSK EEEAGVKELA 251 300 ENSP00000378611/1-748 KQVKSLPVVN YNLLKYICRF LDEVQSYSGV NKMSVQNLAT VFGPNILRPK ENSBTAP00000005165/1-654 KQVKSLPVVN YNLLKYICRF LDEVQSYSGI NKMSVQNLAT VFGPNILRPK ENSTTRP00000015238/1-748 KQVKSLPVVN YNLLKYICXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17890T0/1-441 ---------- ---------- ---------- ---------- ---------- BACU006888/1-653 KQVKSLPVVN YNLLKYICRF LDEVQSYSGI NKMSVQNLAT VFGPNILRPK 301 350 ENSP00000378611/1-748 VEDPLTIMEG TVVVQQLMSV MISKHDCLFP KDAELQSKPQ DGVS-NNNEI ENSBTAP00000005165/1-654 VEDPLTIMEG TVVVQQLMSV MIGKHDRLFP KDAELQSKPQ DGVSNNNNDL ENSTTRP00000015238/1-748 XXXXXXXXXX TVVVQQLMSM MISKHDRLFP KDAELQSKPQ DGVSNNNNDL bmy_17890T0/1-441 -------MRG TVVVQQLMSM MISKHDRLFP KDAELQSKPQ DGVSNNNNDL BACU006888/1-653 VEDPLTIMEG TVVVQQLMSM MISKHDRLFP KDAELQSKPQ DGVSNNNNDL 351 400 ENSP00000378611/1-748 QKKATMGQLQ NKENNNTKDS PSRQCSWDKS ESPQRSSMNN GSPTALSGSK ENSBTAP00000005165/1-654 QKKALMGQLQ NKENNNTNDS PVRRCSWDKP ESPQRSSMDN GSPTALPGSK ENSTTRP00000015238/1-748 QKKATMGQLQ NTENNNTKDS PGRRCSWDKS ESPQRSNMDN GSPTALSGSK bmy_17890T0/1-441 QKKATMGQLQ NKENNNTKDS PGRRCSWDKS ESPQRSSTDN GSPTALSGSK BACU006888/1-653 QKKATMGQLQ NKENNNTKDS PGRRCSWDKS ESPQRSSTDN GSPTALSGNK 401 450 ENSP00000378611/1-748 TNSPKNSVHK LDVSRSPPLM VKKNPAFNKG SGIVTNGSFS SSNAEGLEKT ENSBTAP00000005165/1-654 TNSPRNSIHK LDVSRSPPLM VKKNPAFNKG SGIVTNGSFS SSNAEALEKA ENSTTRP00000015238/1-748 TNSPRNSVHK LDVSRSPPLM VKKNPAFNKG SGIVTNGSFS SSNAEGLEKA bmy_17890T0/1-441 TNSPRNSVHK LDVSRSPPLM VKKNPAFNKG SGIVTNGSFS SSNAEGLEKA BACU006888/1-653 TNSPRNSVHK LDVSRSPPLM VKKNPAFNKG SGIVTNGSFS SSNAEGLEKA 451 500 ENSP00000378611/1-748 QTTPNGSLQA RRSSSLKVSG TKMGTHSVQN GTVRMGILNS DTLGNPTNVR ENSBTAP00000005165/1-654 QTTPNGSLQA RRTSSLKGSG TKMGTHSVQN GTVRMGILNS DTLGNPGNGR ENSTTRP00000015238/1-748 QTTPNGSLQS RRTSSLKGSG TKMGTHSVQN GTVRMGILNT DTLGNPVNGR bmy_17890T0/1-441 QTTPNGSLQA RRTSSLKGSG TKMGTHSVQN GTVRMGILNT DTLGNPVNGR BACU006888/1-653 QTTPNGSLQA RRTSSLKGSG TKMGTQSVQN GTVRMGILNT DTLGNPVNGR 501 550 ENSP00000378611/1-748 NMSWLPNGYV TLRDNKQKEQ AGELGQHNRL STYDNVHQQF SMMNLDDKQS ENSBTAP00000005165/1-654 SMSWLPNGYV TLRDNKQKEQ AGESGQHNRL STYDNVHQQF SAMSLDDKQS ENSTTRP00000015238/1-748 SMSWLPNGYV TLRDNKQKEQ AGESGQHNRL STYDNVHQQF SVMSLDDKQS bmy_17890T0/1-441 SMSWLPNGYV TLRDTKQKEQ AGESGQHNRL STYDNVHQQF SVMSLDDKQS BACU006888/1-653 SMSWLPNGYV TLRDNKQKEQ AGESGQHNRL STYDNVHQQF SVMSLDDKQS 551 600 ENSP00000378611/1-748 IDSATWSTSS CEISLPENSN SCRSSTTTCP EQDFFGGNFE DPVLDGPPQD ENSBTAP00000005165/1-654 VDSATWSTSS CEISLPENST SCRSSTTTCP EQDFYGGNFE DPVLDGPPQD ENSTTRP00000015238/1-748 IDSATWSTSS CEISLPENSN SCRSSTTTCP EQDFYGGNFE DPVLDGPPQD bmy_17890T0/1-441 VDSATWSTSS CEISLPENSN SCRSSTTTCP EQDFYGGNFE DPVLDGPPQD BACU006888/1-653 VDSATWSTSS CEISLPENSN SCRSSTTTCP EQDFYGGNFE DPVLDGPPQD 601 650 ENSP00000378611/1-748 DLSHPRDYES KSDHRSVGGR SSRATSSSDN SETFVGNSSS NHSALHSLVS ENSBTAP00000005165/1-654 DLPHPADYEN KSDRRSVGGR SSRATSSSDN SETFVSNNTS NHSALHSLVS ENSTTRP00000015238/1-748 DLSHPGDYEN KSDRRSVGGR SSRATSSSDN SETFVGH-TS NHSALHSLVS bmy_17890T0/1-441 DLSHPGDYEN KSDRRSVGGR SSRATSSSDN SETFVGH-TS NHSALHSLVS BACU006888/1-653 DLSHPGDYEN KSDRRSVGGR SSRATSSSDN SETFVGH-TS NHSALHSLVS 651 700 ENSP00000378611/1-748 SLKQEMTKQK IEYESRIKSL EQRNLTLETE MMSLHDELDQ ERKKFTMIEI ENSBTAP00000005165/1-654 SLKQEMTKQK IEYESRIKSL EQRNLTLETE MMSLHDELDQ ERKKFTMIEI ENSTTRP00000015238/1-748 SLKQEMTKQK IEYESRIKSL EQRNLSLETE MMSLHDELDQ ERKKFTMIEI bmy_17890T0/1-441 SLKQEMTKQK IEYESRIKSL EQRNLTLETE MMSLHDELDQ ERKKFTMIEI BACU006888/1-653 SLKQEMTKQK IEYESRIKSL EQRNLTLETE MMSLHDELDQ ERKKFTMIEI 701 750 ENSP00000378611/1-748 KMRNAERAKE DAEKRNDMLQ KEMEQFFSTF GELTVEPRRT ERGNTIWIQ ENSBTAP00000005165/1-654 KMRNAERAKE DAEKRNDMLQ KEMEQFFSTF GELTVEPRRT ERGNTIWIQ ENSTTRP00000015238/1-748 KMRNAERAKE DAEKRNDMLQ KEMEQFFSTF GELTLEPRRT ERGNTIWIQ bmy_17890T0/1-441 KMRNAERAKE DAEKRNDMLQ KEMEQFFSTF GELTVEPRRX ERGNTIWIQ BACU006888/1-653 KMRNAERAKE DAEKRNDMLQ KEMEQFFSTF GELTVEPRRT ERGNTIWIQ