KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:25:48 2014  Check: 00 ..

 Name: ENSP00000289359/1-249     Len:    252  Check:  2749  Weight:  1.00
 Name: ENSBTAP00000005179/1-248  Len:    252  Check:  6748  Weight:  1.00
 Name: ENSTTRP00000004641/1-250  Len:    252  Check:  5421  Weight:  1.00
 Name: bmy_09404T0/1-251         Len:    252  Check:  5507  Weight:  1.00
 Name: BACU018959/1-237          Len:    252  Check:  8655  Weight:  1.00

//


                          1                                                   50
ENSP00000289359/1-249     MAKSGLRQDP QSTAAATVLK RAVELDSESR YPQALVCYQE GIDLLLQVLK 
ENSBTAP00000005179/1-248  MSRSSLAQDP GSTAALTVLK RALDLESESR GPQALVCYQE GIDLLLQVLK 
ENSTTRP00000004641/1-250  MAGSLQGQDS GSTAAVTVIK RALELESESR YPQALVCYQE GIDMLLQVLK 
bmy_09404T0/1-251         MAGSLLGQDS GSTAAVTVIK RALELESESR YPQALVCYQE GIDLLLQVLK 
BACU018959/1-237          MAGSLLGQDS GSTAAVTVIK RALELESESR YPQALVCYQE GIDLLLQVLK 


                          51                                                 100
ENSP00000289359/1-249     GTKDNTKRCN LREKISKYMD RAENIKKYLD QEKEDGKYHK QIKIEENATG 
ENSBTAP00000005179/1-248  GTKDETKKRN LRKIISDHMD RAEHLKKRLD QEKEAGKYHK QIKIEENATG 
ENSTTRP00000004641/1-250  GTKDVTKKCN LRKRISDYMD RAENIKKYLD QEKEAGKYHK QIKIEENATG 
bmy_09404T0/1-251         GTKDVTKKSN LRKRISDYMD RAENIKKYLD QEKEAGKYHK QIKIEENATG 
BACU018959/1-237          GTKDVTKKSN LRKRISDYMD RAENIKKYLD QEKEAGKYHK QIKIEENATG 


                          101                                                150
ENSP00000289359/1-249     FSYESLFREY LNETVTEVWI EDPYIRHTHQ -LYNFLRFCE MLIKRPCKVK 
ENSBTAP00000005179/1-248  FSYESLFQEY LSETVTEVWI EDPYIRHTHQ -LYNFLRFCE MLVKRPCKVK 
ENSTTRP00000004641/1-250  FSYESLFQEY LNETVTEVWI EDPYIRHTHH XXXXXXXXXX XXXXXXXXXX 
bmy_09404T0/1-251         FSYESLFQEY LNETVTEVWI EDPYIRHTHQ -LYNFLRFCE MLVKGPCKIK 
BACU018959/1-237          FSYESLFQEY LNETVTEVWI EDPYIRHTHQ ----VGEMYS HTMKHYCFKC 


                          151                                                200
ENSP00000289359/1-249     TIHLLTSLDE GIEQVQQSRG LQEIEESLRS HGVLLEVQYS SSIHDREIR- 
ENSBTAP00000005179/1-248  TIHLLTSLDE GTGKDQHS-G LEEIKQSLRN HGVSLELEYS SSIHDREIR- 
ENSTTRP00000004641/1-250  XXXXXXXXXX GSGKEQQSSG LEEIRESLRN HGVQLELEYS SVIHDREIR- 
bmy_09404T0/1-251         TIHLLTSLDE GSGKEQQSSG LEQIRESLRN HGVQLELEYS SLIHDREIRL 
BACU018959/1-237          TSY------- --GKEQQSSG LEEIRESLRN HGVQLELEYS SLIHDREIR- 


                          201                                                250
ENSP00000289359/1-249     -FNNGWMIKI GRGLDYFKKP QSRFSLGYCD FDLRPCHETT VDIFHKKHTK 
ENSBTAP00000005179/1-248  -FNNGWIIKI GRGLDYFKKP QSRFSLGYCD FDLRPCHETT VDIFHNKHTK 
ENSTTRP00000004641/1-250  -FNNGWMIKI GRGLDYFKKP QSRFSLGYCD FDLRPCHETT VDIFHNKHTQ 
bmy_09404T0/1-251         VFNNGWMIKI GRGLDYFKKP QSRFSLGYCD FDLRPCHETX VDIFHNKHTK 
BACU018959/1-237          -FNNGWMIKI GRGLDYFKKP QSRFSLGYCD FDLRPCHETT VDIFHNKHTQ 


                          251                                                300
ENSP00000289359/1-249     NI 
ENSBTAP00000005179/1-248  KI 
ENSTTRP00000004641/1-250  KI 
bmy_09404T0/1-251         KI 
BACU018959/1-237          KI