KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:53 2014 Check: 00 .. Name: ENSTTRP00000014174/1-433 Len: 519 Check: 4724 Weight: 1.00 Name: ENSP00000368818/1-507 Len: 519 Check: 3278 Weight: 1.00 Name: ENSBTAP00000005210/1-500 Len: 519 Check: 9976 Weight: 1.00 Name: bmy_19338T0/1-385 Len: 519 Check: 1343 Weight: 1.00 Name: BACU005270/1-509 Len: 519 Check: 4161 Weight: 1.00 // 1 50 ENSTTRP00000014174/1-433 ---------- ---------- --------KA TDGSLQSEDW TLNMEICDII ENSP00000368818/1-507 ------MEFL LGNPFSTPVG Q-C---LEKA TDGSLQSEDW TLNMEICDII ENSBTAP00000005210/1-500 ------LELL LAQPICLRGQ WEF---AEKA TDGSLQSEDW TLNMEICDII bmy_19338T0/1-385 ---------- ---------- ---------- ---------- ---MEICDII BACU005270/1-509 MLDEASFDWE PGRPLEQRQD LECRVIPEKA TDGSLQSEDW TLNMEICDII 51 100 ENSTTRP00000014174/1-433 NETEEGPKDA IRALKKRLNG NRNYREVMLA LT-------- ---------- ENSP00000368818/1-507 NETEEGPKDA IRALKKRLNG NRNYREVMLA LTVLETCVKN CGHRFHILVA ENSBTAP00000005210/1-500 NETEEGPKDA IRALKKRLNG NRNYREVMLA LTVLETCVKN CGHRFHVLVA bmy_19338T0/1-385 NETEEGPKDA IRALKKRLNG NRNYREVMLA LTVLETCVKN CGHRFHVLVA BACU005270/1-509 NETEEGPKDA IRALKKRLNG NRNYREVMLA LTVLETCVKN CGHRFHVLVA 101 150 ENSTTRP00000014174/1-433 ---------- ---------- ---------- --AWADAFRS SPDLTGVVHA ENSP00000368818/1-507 NRDFIDSVLV KIISPKNNPP TIVQDKVLAL IQAWADAFRS SPDLTGVVHI ENSBTAP00000005210/1-500 NRDFIDSVLV KVISPKNSPP TIVQDKVLAL IQAWADAFRS SPDLTGVVHA bmy_19338T0/1-385 NRDFIDGVLV KIISPKSNPP TIVQDKVLAL IQAWADAFRS SPDLTGVVHA BACU005270/1-509 NRDFIDGVLV KIISPKSNPP TIVQDKVLAL IQAWADAFRS SPDLTGVVHA 151 200 ENSTTRP00000014174/1-433 YEELKRKGME FPMADLDALS PIHTPQRSVP EVDPATSMPK SQSQLQPRTS ENSP00000368818/1-507 YEELKRKGVE FPMADLDALS PIHTPQRSVP EVDPAATMPR SQS--QQRTS ENSBTAP00000005210/1-500 YEELKRKGVE FPMADLDALS PIHTPQRSVP EVDPAATMPK SQS--QLRTS bmy_19338T0/1-385 YEELKRKGME FPMADLDALS PIHTPQRSVP EVDPATAMPR SQS--QPRTS BACU005270/1-509 YEELKRKGME FPMADLDALS PIHTPQRSVP EVDPATPIPR SQS--QPRTS 201 250 ENSTTRP00000014174/1-433 SGS------- -SLVPQAPAL SAAGPITANS EQXXXXXXXX XXXXXXXXXX ENSP00000368818/1-507 AGSYSSPPPA PYSAPQAPAL SVTGPITANS EQIARLRSEL DVVRGNTKVM ENSBTAP00000005210/1-500 SSS------- -YSAPQAPAL STAGPITANS EQIARLRSEL DVVRGNTKVM bmy_19338T0/1-385 SGS------- -SSAPQAPAL SAAGPITANS EQIARLRSEL DVVRGNTKVM BACU005270/1-509 SGS------- -SSAPQAPAL SAAGPITANS EQIARLRSEL DVVRGNTKVM 251 300 ENSTTRP00000014174/1-433 XXXXXXXXXX XXXXXXXXXX XELHRTCRAM QQRVVELISR VCNEEVTEEL ENSP00000368818/1-507 SEMLTEMVPG QEDSSDLELL QELNRTCRAM QQRIVELISR VSNEEVTEEL ENSBTAP00000005210/1-500 SEMLTEMVPG QEDSSDLELL QELHRTCRAM QQRVVELISR VCNEEVTEEL bmy_19338T0/1-385 SEMLTEMVPG QEDSSDLELL Q--------- ---------- ---------- BACU005270/1-509 SEMLTEMVPG QEDSSDLELL QELHRTCRAM QQRVVELISR VCNEEVTEEL 301 350 ENSTTRP00000014174/1-433 LHVNDDLNNV FLRYERFERY RSGRSVQNAS NGVLSEVTED NLIDLGPGSP ENSP00000368818/1-507 LHVNDDLNNV FLRYERFERY RSGRSVQNAS NGVLNEVTED NLIDLGPGSP ENSBTAP00000005210/1-500 LHVNDDLNNV FLRYERFERY RSGRSAQNAT NGVLSEVTED NLIDLGPGSP bmy_19338T0/1-385 ---------- ---------- ---------- --VLSEVTED NLIDLGPGSP BACU005270/1-509 LHVNDDLNNV FLRYERFERY RSGRSVQNAS NGVLSEVTED NLIDLGPGSP 351 400 ENSTTRP00000014174/1-433 AVVSPTVGGT VPPSSLSSQL AGLDLGAESV SGTLSSLQQC HPRDGFDMFA ENSP00000368818/1-507 AVVSPMVGNT APPSSLSSQL AGLDLGTESV SGTLSSLQQC NPRDGFDMFA ENSBTAP00000005210/1-500 AVVSPTVGST APPSSLSSQL AGLDLGTESV SGTLSSLQQC QPRDSFDVFA bmy_19338T0/1-385 AVVSPTVGAT VPPSSLSSQL AGLDLGAESV SGTLSSLQQC HPRDGFDMFT BACU005270/1-509 AVVSPTVGGT VPPSSLSSQL AGLDLGAESV SGTLSSLQQC HPRDSFDMFT 401 450 ENSTTRP00000014174/1-433 QTRGSSSAEQ RKTATYEDPQ AVGVIASAVD GRKQNPEVIP VVQPSVMDDI ENSP00000368818/1-507 QTRGNSLAEQ RKTVTYEDPQ AVGGLASALD NRKQSSEGIP VAQPSVMDDI ENSBTAP00000005210/1-500 QTRGSASAEQ RNPPTYEDPQ AVGVPAVAVD GRKQSSEVIP VVQPSVMDDI bmy_19338T0/1-385 QTRGSSSAEQ RKTATYEDPQ AVGVLASAVD GRKQSTEV-- ---------- BACU005270/1-509 QTRGSSSAEQ RKTATYEDPQ AVGVLASAVD GRKQSTEVIP VVQPSVMDDI 451 500 ENSTTRP00000014174/1-433 EVWLRTDLKG DDLEEGVTSE EFDKFLEERA KAAEMVPNLP SPPAEAPAPA ENSP00000368818/1-507 EVWLRTDLKG DDLEEGVTSE EFDKFLEERA KAAEMVPDLP SPPMEAPAPA ENSBTAP00000005210/1-500 EVWLRTDLKG DDLEEGVTSE EFDKFLEERA KAAEMVPSLP SPPADAPAPA bmy_19338T0/1-385 --------KG DDLEEGVTSE EFDKFLEERA KAAEMVPNLP SPPAEAPAPA BACU005270/1-509 EVWLRTDLKG DDLEEGVTSE EFDKFLEERA KAAEMVPNLP SPPAEAPAPA 501 550 ENSTTRP00000014174/1-433 SNPSSRKKPE QSEDALFAL ENSP00000368818/1-507 SNPSGRKKPE RSEDALFAL ENSBTAP00000005210/1-500 SNPSGRKKPE RSEDALFAL bmy_19338T0/1-385 SNPSSRKKPE QSEDALFAL BACU005270/1-509 SNPSSRKKPE QSEDALFAL